Rw3G013790

Interactor of constitutive active ROPs

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
13587224 .. 13590140
2917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G013790.1

Sequence Viewer

Length: 1734 bp
ATGGCAACTAGGACCCCAAAAGGAAGTCCAAAAGTCACTGAACGCAGGTCGCCACGAAGTCCAGTATCCGAGAGGAAGCTGCCAAAAAGAGTGTCAGAATTGGAATCACAACTTTCTCAATTGCAAGAGGATCTGAAGAGGGCAAAGGACCAGTTAAACTCATCTGAGTCAGCAAAGAGGCGATGCCAGAAGGAGGCTGAAGAAGCCAAGAACCAGCTATTAGCAATGTCTGCAAAGCTTGAAGAGTCTGAACAGCAACTGCAGGAAATTTCTTCTTCTGAAGATGCTCGTATTCAAGAGCTCCGTCAACTTTCTCAGGATCGAGATAGAGCATGGGAATCTGAACTTCAGGCTGTTCAACAGCAGCGTTCGATGGATTCCACTGCCTTGGCTTCTGCCATCAATGAAATTCAGAAGCTAAAGGGTCAGGTGGAAATGGTGGCGGACTCTGAAGCCACCCAGCGGAGGCATGCAGAGTCAGCAGACGCTGAGATCCAGACCTTGAGATTGGAACTTTCTGAAACTCTCTCCCTGGTTGAGAAATTGAAAACTGAGCTAAGTGATTGCAAAGAATCTGAAGCCAGGGCCGTAGAACTTATAGACAGTACTCGTATGCAATTGGAGAGGGCAAATGCAACCATAGAATCGCTCCAATTGGATAGGACCAAAGGGTCAGAGTACTGCAACTCTTTATCATTGGAGTTGGAGCAGTCTAAAGATCGCATTAAATCACTGGAGAGTCTTGTGAGCAAACTGCAGGCAGAAGTTGCTATTAGTAACAGCAATCAATTGGTAAACTCTTCAGGCAATATTTCAAAACTTTCTCAGGGAGATGACCAAACTGAAGAAACAGTACAGTTAAAAGAAGAGCTGAATTGTTTGAAATATGAAGCGAGTCAATTGAGGTCTGCATTAGAAGCGGCTGAGATGAGGTACCAAGAAGAATATATTCAGAGCACGCTGCAGATTAGAAGTGCATATGATGAAGTTGAATCTACAAAATCTGAATCATGTCAGAGGGAAGCTGAATTGGCATCAGAACTGAAGCAAGCAAGGGCTCATGTTGAAGACTTGAGCACTCAGCTGATGGATAAAGAAAATCAATTGCAGAGTATATCGGAGGAAAATGACAGGTTGAGCTTGCAAATTGAGAAAAATCTATCAAGTGAAGGGGAATCTGAACTTGCAACGGAGCTGAAGAAGTCGGAAACCGCTGTGGTAGAGTTGAAGGCCAGTTTGATGGATAAGGAGACAGAATTGCAGAACATCGTTGAGGAAAATGAAATGCTGAAGATTGAACTTAAAAACAAGGAAATGGAGAGGAACAATGTCAATGACGACGCTGTTGTTTCAGCTGAAGCAACAGGGGAGGCAGAGCGAGAGGCTGTAATAAAGGTTGGCCATTTAACTGAAGAAGCTGATAAAAGTACACAGAGAGCAGCACGAGCGACTGAGCAGCTGGATGCAGCACAGGCTGCAAATTCTGAATTGGAGGCTGAGTTAAGGAGGTTAAAGGTGCAGTCAGATCAGTGGAGGAAGGCCGCTGAGGCGGCTGCTGCTATTCTTTCAACAGGAAACAACGGGAAGTTTGTGGAGAGAACAGGTTCCCTTGAAAGCCACTACAATCCCTTGAGTTCACCTTATTCAGAAGACTTGGACGATGACTCGCCAAAGAAGAAAAATGTGACCATGTTGAAGAAGATTGGTGTTCTATGGAAGAAGGGCCAAAAGTAG

Protein Analysis

577

Amino Acids

64.8

Weight (kDa)

4.88

Isoelectric Point (pI)

60.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 670
Acc36I ACCTGC 1 cut(s) 36
Acc65I GGTACC 1 cut(s) 933
AccB1I GGYRCC 1 cut(s) 933
AciI CCGC 6 cut(s) 443, 463, 920, 1212, 1542, 1550
AclWI GGATC 3 cut(s) 138, 327, 487
AcoI YGGCCR 1 cut(s) 1399
AcsI RAATTY 3 cut(s) 267, 408, 1480
AfaI GTAC 5 cut(s) 607, 680, 855, 935, 1429
AfiI CCNNNNNNNGG 3 cut(s) 193, 462, 465
AjnI CCWGG 2 cut(s) 531, 581
Alw21I GWGCWC 3 cut(s) 303, 959, 1079
Alw26I GTCTC 1 cut(s) 1244
AlwI GGATC 3 cut(s) 138, 327, 487
AlwNI CAGNNNCTG 2 cut(s) 259, 488
AoxI GGCC 5 cut(s) 585, 1230, 1399, 1539, 1723
ApeKI GCWGC 9 cut(s) 79, 364, 961, 1439, 1456, 1466, 1475, 1553, 1556
ApoI RAATTY 3 cut(s) 267, 408, 1480
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
Asp700I GAANNNNTTC 2 cut(s) 948, 1603
Asp718I GGTACC 1 cut(s) 933
AspS9I GGNCC 5 cut(s) 12, 148, 585, 663, 1723
AsuHPI GGTGA 1 cut(s) 1629
AvaII GGWCC 3 cut(s) 12, 148, 663
BalI TGGCCA 1 cut(s) 1401
BanI GGYRCC 1 cut(s) 933
BanII GRGCYC 2 cut(s) 303, 1060
BarI GAAGNNNNNNTAC 2 cut(s) 837, 869
BauI CACGAG 1 cut(s) 1443
BbsI GAAGAC 2 cut(s) 1074, 1656
Bbv12I GWGCWC 3 cut(s) 303, 959, 1079
BbvCI CCTCAGC 1 cut(s) 1545
BbvI GCAGC 9 cut(s) 66, 376, 948, 1451, 1462, 1468, 1478, 1540, 1543
BccI CCATC 4 cut(s) 367, 407, 1081, 1234
BceAI ACGGC 1 cut(s) 572
BciT130I CCWGG 2 cut(s) 533, 583
BciVI GTATCC 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 1244
BfaI CTAG 1 cut(s) 9
BfmI CTRYAG 3 cut(s) 260, 755, 962
BfuAI ACCTGC 1 cut(s) 36
BfuI GTATCC 1 cut(s) 76
BglI GCCNNNNNGGC 1 cut(s) 1547
BmcAI AGTACT 2 cut(s) 607, 680
Bme1390I CCNGG 2 cut(s) 533, 583
Bme18I GGWCC 3 cut(s) 12, 148, 663
BmgT120I GGNCC 5 cut(s) 12, 148, 585, 663, 1723
BmiI GGNNCC 3 cut(s) 14, 935, 1606
BmrFI CCNGG 2 cut(s) 533, 583
BmsI GCATC 4 cut(s) 173, 274, 1043, 1453
BpiI GAAGAC 2 cut(s) 1074, 1656
BpmI CTGGAG 1 cut(s) 755
Bpu10I CCTNAGC 1 cut(s) 1545
BpuEI CTTGAG 3 cut(s) 523, 1093, 1651
BsaJI CCNNGG 3 cut(s) 387, 531, 582
BsaXI ACNNNNNCTCC 2 cut(s) 1484, 1514
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 462, 465
Bse1I ACTGG 4 cut(s) 62, 151, 738, 1233
Bse3DI GCAATG 1 cut(s) 231
BseBI CCWGG 2 cut(s) 533, 583
BseDI CCNNGG 3 cut(s) 387, 531, 582
BseGI GGATG 1 cut(s) 1468
BseLI CCNNNNNNNGG 3 cut(s) 193, 462, 465
BseMI GCAATG 1 cut(s) 231
BseNI ACTGG 4 cut(s) 62, 151, 738, 1233
BseXI GCAGC 9 cut(s) 66, 376, 948, 1451, 1462, 1468, 1478, 1540, 1543
BseYI CCCAGC 1 cut(s) 459
BsgI GTGCAG 1 cut(s) 1538
BshFI GGCC 5 cut(s) 587, 1232, 1401, 1541, 1725
BshNI GGYRCC 1 cut(s) 933
BsiHKAI GWGCWC 3 cut(s) 303, 959, 1079
BslI CCNNNNNNNGG 3 cut(s) 193, 462, 465
BsmAI GTCTC 1 cut(s) 1244
BsnI GGCC 5 cut(s) 587, 1232, 1401, 1541, 1725
Bsp1286I GDGCHC 4 cut(s) 303, 959, 1060, 1079
Bsp143I GATC 5 cut(s) 130, 319, 492, 718, 1525
BspACI CCGC 6 cut(s) 443, 463, 920, 1212, 1542, 1550
BspANI GGCC 5 cut(s) 587, 1232, 1401, 1541, 1725
BspLI GGNNCC 3 cut(s) 14, 935, 1606
BspMAI CTGCAG 3 cut(s) 264, 759, 966
BspMI ACCTGC 1 cut(s) 36
BspPI GGATC 3 cut(s) 138, 327, 487
BspQI GCTCTTC 1 cut(s) 861
BspT107I GGYRCC 1 cut(s) 933
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 4 cut(s) 62, 151, 738, 1233
BssECI CCNNGG 3 cut(s) 387, 531, 582
BssMI GATC 5 cut(s) 130, 319, 492, 718, 1525
BssSI CACGAG 1 cut(s) 1443
BssT1I CCWWGG 1 cut(s) 387
Bst2BI CACGAG 1 cut(s) 1443
Bst2UI CCWGG 2 cut(s) 533, 583
Bst4CI ACNGT 3 cut(s) 605, 853, 858
Bst6I CTCTTC 4 cut(s) 131, 237, 805, 861
BstAPI GCANNNNNTGC 3 cut(s) 230, 767, 1475
BstC8I GCNNGC 5 cut(s) 471, 759, 959, 1050, 1142
BstF5I GGATG 1 cut(s) 1468
BstKTI GATC 5 cut(s) 133, 322, 495, 721, 1528
BstMAI GTCTC 1 cut(s) 1244
BstMBI GATC 5 cut(s) 130, 319, 492, 718, 1525
BstNI CCWGG 2 cut(s) 533, 583
BstNSI RCATGY 1 cut(s) 473
BstSCI CCNGG 2 cut(s) 531, 581
BstSFI CTRYAG 3 cut(s) 260, 755, 962
BstV1I GCAGC 9 cut(s) 66, 376, 948, 1451, 1462, 1468, 1478, 1540, 1543
BstV2I GAAGAC 2 cut(s) 1074, 1656
BstX2I RGATCY 2 cut(s) 130, 492
BstXI CCANNNNNNTGG 2 cut(s) 388, 1240
BstYI RGATCY 2 cut(s) 130, 492
BsuI GTATCC 1 cut(s) 76
BsuRI GGCC 5 cut(s) 587, 1232, 1401, 1541, 1725
BtgZI GCGATG 1 cut(s) 196
BtsCI GGATG 1 cut(s) 1468
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 4 cut(s) 36, 381, 731, 1535
BveI ACCTGC 1 cut(s) 36
Cac8I GCNNGC 5 cut(s) 471, 759, 959, 1050, 1142
CaiI CAGNNNCTG 2 cut(s) 259, 488
Cfr13I GGNCC 5 cut(s) 12, 148, 585, 663, 1723
CseI GACGC 2 cut(s) 494, 1349
Csp6I GTAC 5 cut(s) 606, 679, 854, 934, 1428
CviAII CATG 5 cut(s) 333, 470, 1011, 1061, 1690
CviQI GTAC 5 cut(s) 606, 679, 854, 934, 1428
DpnI GATC 5 cut(s) 132, 321, 494, 720, 1527
DpnII GATC 5 cut(s) 130, 319, 492, 718, 1525
DrdI GACNNNNNNGTC 1 cut(s) 670
DseDI GACNNNNNNGTC 1 cut(s) 670
EaeI YGGCCR 1 cut(s) 1399
Eam1104I CTCTTC 4 cut(s) 131, 237, 805, 861
EarI CTCTTC 4 cut(s) 131, 237, 805, 861
EciI GGCGGA 1 cut(s) 458
Ecl136II GAGCTC 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 387
Eco24I GRGCYC 2 cut(s) 303, 1060
Eco47I GGWCC 3 cut(s) 12, 148, 663
Eco53kI GAGCTC 1 cut(s) 301
EcoICRI GAGCTC 1 cut(s) 301
EcoO109I RGGNCCY 1 cut(s) 12
EcoRII CCWGG 2 cut(s) 531, 581
EcoT14I CCWWGG 1 cut(s) 387
EcoT38I GRGCYC 2 cut(s) 303, 1060
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 5 cut(s) 336, 473, 1014, 1064, 1693
FatI CATG 5 cut(s) 332, 469, 1010, 1060, 1689
FauNDI CATATG 1 cut(s) 979
FokI GGATG 1 cut(s) 1475
FriOI GRGCYC 2 cut(s) 303, 1060
FspBI CTAG 1 cut(s) 9
GsaI CCCAGC 1 cut(s) 463
GsuI CTGGAG 1 cut(s) 755
HaeIII GGCC 5 cut(s) 587, 1232, 1401, 1541, 1725
HgaI GACGC 2 cut(s) 494, 1349
Hin1II CATG 5 cut(s) 336, 473, 1014, 1064, 1693
HincII GTYRAC 1 cut(s) 308
HindII GTYRAC 1 cut(s) 308
HindIII AAGCTT 1 cut(s) 236
HphI GGTGA 1 cut(s) 1629
Hpy166II GTNNAC 4 cut(s) 308, 796, 1430, 1637
Hpy188III TCNNGA 4 cut(s) 296, 317, 323, 496
Hpy8I GTNNAC 4 cut(s) 308, 796, 1430, 1637
Hpy99I CGWCG 1 cut(s) 1343
HpyAV CCTTC 5 cut(s) 184, 1163, 1222, 1531, 1714
HpyCH4III ACNGT 3 cut(s) 605, 853, 858
Hsp92II CATG 5 cut(s) 336, 473, 1014, 1064, 1693
KpnI GGTACC 1 cut(s) 937
Kzo9I GATC 5 cut(s) 130, 319, 492, 718, 1525
LguI GCTCTTC 1 cut(s) 861
LmnI GCTCC 4 cut(s) 306, 654, 706, 1192
Lsp1109I GCAGC 9 cut(s) 66, 376, 948, 1451, 1462, 1468, 1478, 1540, 1543
LweI GCATC 4 cut(s) 173, 274, 1043, 1453
MaeI CTAG 1 cut(s) 9
MaeIII GTNAC 3 cut(s) 34, 776, 1684
MalI GATC 5 cut(s) 132, 321, 494, 720, 1527
MboI GATC 5 cut(s) 130, 319, 492, 718, 1525
MfeI CAATTG 6 cut(s) 119, 617, 653, 788, 899, 1103
MflI RGATCY 2 cut(s) 130, 492
MhlI GDGCHC 4 cut(s) 303, 959, 1060, 1079
MlsI TGGCCA 1 cut(s) 1401
MluNI TGGCCA 1 cut(s) 1401
MlyI GAGTC 7 cut(s) 176, 254, 440, 485, 748, 904, 1658
MmeI TCCRAC 2 cut(s) 684, 1185
Mox20I TGGCCA 1 cut(s) 1401
MroXI GAANNNNTTC 2 cut(s) 948, 1603
MscI TGGCCA 1 cut(s) 1401
MseI TTAA 7 cut(s) 155, 726, 860, 1302, 1406, 1502, 1511
Msp20I TGGCCA 1 cut(s) 1401
MspA1I CMGCKG 6 cut(s) 463, 1084, 1214, 1355, 1459, 1544
MspR9I CCNGG 2 cut(s) 533, 583
MunI CAATTG 6 cut(s) 119, 617, 653, 788, 899, 1103
MvaI CCWGG 2 cut(s) 533, 583
NdeI CATATG 1 cut(s) 979
NdeII GATC 5 cut(s) 130, 319, 492, 718, 1525
NlaIII CATG 5 cut(s) 336, 473, 1014, 1064, 1693
NlaIV GGNNCC 3 cut(s) 14, 935, 1606
NmuCI GTSAC 2 cut(s) 34, 1684
NspI RCATGY 1 cut(s) 473
PaeI GCATGC 1 cut(s) 473
PciSI GCTCTTC 1 cut(s) 861
PdmI GAANNNNTTC 2 cut(s) 948, 1603
PfeI GAWTC 8 cut(s) 104, 338, 377, 572, 644, 992, 1007, 1175
PleI GAGTC 7 cut(s) 175, 253, 440, 484, 747, 903, 1658
PpsI GAGTC 7 cut(s) 175, 253, 440, 484, 747, 903, 1658
PpuMI RGGWCCY 1 cut(s) 12
Psp124BI GAGCTC 1 cut(s) 303
Psp5II RGGWCCY 1 cut(s) 12
Psp6I CCWGG 2 cut(s) 531, 581
PspFI CCCAGC 1 cut(s) 459
PspGI CCWGG 2 cut(s) 531, 581
PspN4I GGNNCC 3 cut(s) 14, 935, 1606
PspPI GGNCC 5 cut(s) 12, 148, 585, 663, 1723
PspPPI RGGWCCY 1 cut(s) 12
PstI CTGCAG 3 cut(s) 264, 759, 966
PstNI CAGNNNCTG 2 cut(s) 259, 488
PsuI RGATCY 2 cut(s) 130, 492
PvuII CAGCTG 3 cut(s) 1084, 1355, 1459
RsaI GTAC 5 cut(s) 607, 680, 855, 935, 1429
RsaNI GTAC 5 cut(s) 606, 679, 854, 934, 1428
SacI GAGCTC 1 cut(s) 303
SapI GCTCTTC 1 cut(s) 861
SaqAI TTAA 7 cut(s) 155, 726, 860, 1302, 1406, 1502, 1511
Sau3AI GATC 5 cut(s) 130, 319, 492, 718, 1525
Sau96I GGNCC 5 cut(s) 12, 148, 585, 663, 1723
ScaI AGTACT 2 cut(s) 607, 680
SchI GAGTC 7 cut(s) 176, 254, 440, 485, 748, 904, 1658
ScrFI CCNGG 2 cut(s) 533, 583
SduI GDGCHC 4 cut(s) 303, 959, 1060, 1079
SfaNI GCATC 4 cut(s) 173, 274, 1043, 1453
SfcI CTRYAG 3 cut(s) 260, 755, 962
SinI GGWCC 3 cut(s) 12, 148, 663
SmlI CTYRAG 3 cut(s) 502, 1072, 1630
SmoI CTYRAG 3 cut(s) 502, 1072, 1630
SphI GCATGC 1 cut(s) 473
SsiI CCGC 6 cut(s) 443, 463, 920, 1212, 1542, 1550
SspI AATATT 1 cut(s) 811
SspMI CTAG 1 cut(s) 9
SstI GAGCTC 1 cut(s) 303
StyD4I CCNGG 2 cut(s) 531, 581
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 3 cut(s) 605, 853, 858
TaqI TCGA 2 cut(s) 322, 371
TatI WGTACW 4 cut(s) 605, 678, 853, 1427
TauI GCSGC 3 cut(s) 923, 1544, 1553
TfiI GAWTC 8 cut(s) 104, 338, 377, 572, 644, 992, 1007, 1175
Tru1I TTAA 7 cut(s) 155, 726, 860, 1302, 1406, 1502, 1511
Tru9I TTAA 7 cut(s) 155, 726, 860, 1302, 1406, 1502, 1511
TscAI CASTG 4 cut(s) 43, 388, 738, 1535
TseFI GTSAC 2 cut(s) 34, 1684
TseI GCWGC 9 cut(s) 79, 364, 961, 1439, 1456, 1466, 1475, 1553, 1556
Tsp45I GTSAC 2 cut(s) 34, 1684
TspDTI ATGAA 4 cut(s) 420, 903, 999, 1296
TspGWI ACGGA 2 cut(s) 293, 1205
TspRI CASTG 4 cut(s) 43, 388, 738, 1535
VpaK11BI GGWCC 3 cut(s) 12, 148, 663
XapI RAATTY 3 cut(s) 267, 408, 1480
XceI RCATGY 1 cut(s) 473
XmnI GAANNNNTTC 2 cut(s) 948, 1603
XspI CTAG 1 cut(s) 9
ZrmI AGTACT 2 cut(s) 607, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.