MD12G1124200.v1.1

Interactor of constitutive active ROPs

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
19918238 .. 19922891
4654 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1124200.v1.1.491

Sequence Viewer

Length: 1860 bp
ATGTTGAAGATGCAGACACCAAAAGCAAAAATTGGCTCTTTGGAAGTGCCTCAAAGGAGATCTCCAGCAAGGCCTCGAACTAACAAGACGCCTGGATCAGAGCCGGATTCTGTATCCTCTCCAAATATGGCGACTAAGACCCTGAAAAACAGAAGTCCAAAAGTCAATGAGCGCATGTCACCACGAAGCCCTGTACCTGAGAAGAAGCAACCGAAAAGAGTGTCAGAAATGGAAACACAACTTGCTCAACTCCAAGAGGATCTGAAGAAGACAAAGGACCAGTTAAACACAACTGAGTCGCTGAAGAGACGATCCCAGCAGGAGGCTGAAGAAGCGAAGAACCAGATATTAGCCATGTCTGCAAAGCTTGAAGAATCCCAACAGCAACTGATGGAACTTTCTACTTCTGAAGATGCTCGTCTTCAAGAGCTTCGTGAACTGTCTCAGGATCGGGATAGAGCATGGGAGTCTGAACTTGAGGCTGTCCAAAAGCAGCGGTCAATGGATTCTGCTGCCCTGGCTTCTGCTATGAATGAAATTCAGAAGCTAAAGGGTCAGCTCGAAAGGGTAGCCGAGTCTGAGGACGCTCAAAACAGGCATGCAGAGTCGGCATATGCTGAGATCCAGACCTTGAGAAAGGAACTTTCAGAAACTTTTTCCCTGGTTGAGAAATTGAAAGCTGAGCTCAATGAATGCAAAGAATCTGAATCCCGGGCACTAGAAGTTATACAAAGCACTCATATGCAATTGGAAGCGGCAAATGCAACCATAGAAATGCTCAAATTGGATGGGATTAAAGCCACAGAGTCTTGCAACTCCTTATCATTGGAGTTGGAGCAATCCAATGCTCGTGTTAAATCACTGGAGGGTCTTGTGAGCAAACTTCAAGCAGAACTGATTAATAGGAAAGGCAATCATTCGGTAAACTCTACAGACAATGTAAAACTTGTTAAGGAAGATGAAAATGAAGAAAGAAAACAGTTACAAGCAGAGCTGAATTCTTTGAAATCCGAAGTGGGTCAGTTGAGATCTGCATTGGATGCAGCTGAGGTCAGGTACCAGGAAGAATACATTCAGAGCACATTGCAGATTCGGAATGCGTACGAGGAAGTTGACGGTGCAAAATCTGAAGCATCCGAGAGGGAAGCTGAACTGCTAGCAGAACTGAAAAAAGCGAAGGATCATATTGAAGACTTGAAAGCACAGTTAATGGATAAGGAAACTGAAATTCAGATTGTATCAAAGAAAAATGATGGGGTGGCCTTGAAAGTTGAGAAAAATTTATCAACTGAAGATGAATCTGAACTTGAATTGGAGCTGAAGAAGTCAGAGACTGTAATGGTAGAGTTGAAGGCAAGTTTGTTGGATAAGGAAACGGAATTGCAGAACATAGCTGAAGAGAATGAAATGCTCAAGATGGAACTAAAAAACAAGGAAATCGAGAGGAATAAAGTTAATGATGAGGCTGTTGTTTCGGAGGAAGCTGCAAGGGCTGCAGCGGGAGAGGCTTTGGTGAAACTGGGCTATGTGACTGAGGAAGCAGATAAAAGTACCAGGAGAGCCGCACAGGTGACTGAGCAGCTGGATGCAGCACAGGCTGCAAATTCTGAACTGGAGGCTGAGTTAAGGAAGTTAAAGGTGCAGGCGGATCAGTGGAGGAAGGCCGCTGAGGCAGCTGCTGCCATGCTTTCAACTGGAAACAATGGGAACCTTGTTGAGAGAACAGGTTCTCTTGACAGCAACAACTACAATCCTATGAATTCACCTTATTCAGAAGACATGGATGATGACTCGCCGAAGAAGAAAAATGGGAATATGTTAAAGAAGATCGGCGTGTTATGGAAGAAGGGCCAAAAGTAG

Protein Analysis

620

Amino Acids

69.46

Weight (kDa)

5.13

Isoelectric Point (pI)

56.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1056
AccB1I GGYRCC 1 cut(s) 1056
AciI CCGC 6 cut(s) 496, 755, 1499, 1563, 1646, 1665
AclWI GGATC 7 cut(s) 103, 267, 306, 456, 616, 1188, 1656
AcsI RAATTY 6 cut(s) 537, 997, 1227, 1279, 1603, 1759
AcuI CTGAAG 8 cut(s) 284, 323, 348, 429, 1149, 1311, 1340, 1416
AcyI GRCGYC 1 cut(s) 89
AfaI GTAC 4 cut(s) 195, 1058, 1103, 1552
AfiI CCNNNNNNNGG 1 cut(s) 322
AjnI CCWGG 5 cut(s) 91, 516, 660, 1059, 1553
Alw21I GWGCWC 2 cut(s) 687, 1082
Alw26I GTCTC 3 cut(s) 301, 447, 1325
AlwI GGATC 7 cut(s) 103, 267, 306, 456, 616, 1188, 1656
AlwNI CAGNNNCTG 3 cut(s) 388, 1334, 1679
Ama87I CYCGRG 1 cut(s) 711
AoxI GGCC 4 cut(s) 71, 1260, 1662, 1849
ApoI RAATTY 6 cut(s) 537, 997, 1227, 1279, 1603, 1759
ArsI GACNNNNNNTTYG 2 cut(s) 206, 238
AseI ATTAAT 1 cut(s) 900
Asp700I GAANNNNTTC 2 cut(s) 1071, 1726
Asp718I GGTACC 1 cut(s) 1056
AspLEI GCGC 1 cut(s) 174
AspS9I GGNCC 2 cut(s) 277, 1849
AsuC2I CCSGG 2 cut(s) 712, 713
AsuHPI GGTGA 4 cut(s) 171, 1525, 1582, 1755
AsuNHI GCTAGC 1 cut(s) 1156
AvaI CYCGRG 1 cut(s) 711
AvaII GGWCC 1 cut(s) 277
BaeGI GKGCMC 1 cut(s) 718
BanI GGYRCC 1 cut(s) 1056
BanII GRGCYC 1 cut(s) 687
BauI CACGAG 1 cut(s) 849
BbsI GAAGAC 4 cut(s) 275, 413, 1197, 1782
Bbv12I GWGCWC 2 cut(s) 687, 1082
BbvCI CCTCAGC 2 cut(s) 1047, 1668
BccI CCATC 4 cut(s) 385, 782, 1247, 1411
BciT130I CCWGG 5 cut(s) 93, 518, 662, 1061, 1555
BciVI GTATCC 1 cut(s) 124
BcnI CCSGG 2 cut(s) 712, 713
BcoDI GTCTC 3 cut(s) 301, 447, 1325
BfaI CTAG 2 cut(s) 719, 1157
BfmI CTRYAG 2 cut(s) 930, 1494
BfuI GTATCC 1 cut(s) 124
BglI GCCNNNNNGGC 1 cut(s) 1670
BglII AGATCT 2 cut(s) 59, 1028
BlpI GCTNAGC 1 cut(s) 681
Bme1390I CCNGG 7 cut(s) 93, 518, 662, 712, 713, 1061, 1555
Bme18I GGWCC 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 711
BmgT120I GGNCC 2 cut(s) 277, 1849
BmiI GGNNCC 2 cut(s) 1058, 1709
BmrFI CCNGG 7 cut(s) 93, 518, 662, 712, 713, 1061, 1555
BmrI ACTGGG 1 cut(s) 1529
BmsI GCATC 4 cut(s) 403, 1030, 1142, 1576
BmtI GCTAGC 1 cut(s) 1160
BmuI ACTGGG 1 cut(s) 1529
BpiI GAAGAC 4 cut(s) 275, 413, 1197, 1782
BpmI CTGGAG 3 cut(s) 48, 884, 1634
Bpu10I CCTNAGC 2 cut(s) 1047, 1668
Bpu1102I GCTNAGC 1 cut(s) 681
BpuEI CTTGAG 3 cut(s) 497, 652, 1397
BpuMI CCSGG 2 cut(s) 712, 713
BsaHI GRCGYC 1 cut(s) 89
BsaJI CCNNGG 3 cut(s) 516, 660, 711
BsaXI ACNNNNNCTCC 2 cut(s) 1607, 1637
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse1I ACTGG 5 cut(s) 280, 867, 1524, 1617, 1699
Bse3DI GCAATG 1 cut(s) 1082
BseBI CCWGG 5 cut(s) 93, 518, 662, 1061, 1555
BseDI CCNNGG 3 cut(s) 516, 660, 711
BseGI GGATG 5 cut(s) 793, 1045, 1133, 1591, 1789
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMI GCAATG 1 cut(s) 1082
BseNI ACTGG 5 cut(s) 280, 867, 1524, 1617, 1699
BseSI GKGCMC 1 cut(s) 718
BseYI CCCAGC 1 cut(s) 315
BsgI GTGCAG 1 cut(s) 1661
BshFI GGCC 4 cut(s) 73, 1262, 1664, 1851
BshNI GGYRCC 1 cut(s) 1056
BsiHKAI GWGCWC 2 cut(s) 687, 1082
BsiHKCI CYCGRG 1 cut(s) 711
BsiSI CCGG 2 cut(s) 104, 712
BsiWI CGTACG 1 cut(s) 1101
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 3 cut(s) 301, 447, 1325
BsmBI CGTCTC 1 cut(s) 301
BsmI GAATGC 2 cut(s) 698, 1102
BsnI GGCC 4 cut(s) 73, 1262, 1664, 1851
BsoBI CYCGRG 1 cut(s) 711
Bsp1286I GDGCHC 3 cut(s) 687, 718, 1082
Bsp1720I GCTNAGC 1 cut(s) 681
BspACI CCGC 6 cut(s) 496, 755, 1499, 1563, 1646, 1665
BspANI GGCC 4 cut(s) 73, 1262, 1664, 1851
BspLI GGNNCC 2 cut(s) 1058, 1709
BspMAI CTGCAG 1 cut(s) 1498
BspOI GCTAGC 1 cut(s) 1160
BspPI GGATC 7 cut(s) 103, 267, 306, 456, 616, 1188, 1656
BspT107I GGYRCC 1 cut(s) 1056
BsrDI GCAATG 1 cut(s) 1082
BsrI ACTGG 5 cut(s) 280, 867, 1524, 1617, 1699
BssECI CCNNGG 3 cut(s) 516, 660, 711
BssNI GRCGYC 1 cut(s) 89
BssSI CACGAG 1 cut(s) 849
Bst2BI CACGAG 1 cut(s) 849
Bst2UI CCWGG 5 cut(s) 93, 518, 662, 1061, 1555
Bst4CI ACNGT 5 cut(s) 441, 981, 1118, 1206, 1336
Bst6I CTCTTC 2 cut(s) 299, 1392
BstACI GRCGYC 1 cut(s) 89
BstAPI GCANNNNNTGC 4 cut(s) 1040, 1493, 1598, 1679
BstC8I GCNNGC 3 cut(s) 600, 1158, 1644
BstF5I GGATG 5 cut(s) 793, 1045, 1133, 1591, 1789
BstHHI GCGC 1 cut(s) 174
BstMAI GTCTC 3 cut(s) 301, 447, 1325
BstNI CCWGG 5 cut(s) 93, 518, 662, 1061, 1555
BstNSI RCATGY 2 cut(s) 178, 602
BstSCI CCNGG 7 cut(s) 91, 516, 660, 710, 711, 1059, 1553
BstSFI CTRYAG 2 cut(s) 930, 1494
BstSLI GKGCMC 1 cut(s) 718
BstV2I GAAGAC 4 cut(s) 275, 413, 1197, 1782
BstX2I RGATCY 4 cut(s) 59, 259, 621, 1028
BstYI RGATCY 4 cut(s) 59, 259, 621, 1028
BsuI GTATCC 1 cut(s) 124
BsuRI GGCC 4 cut(s) 73, 1262, 1664, 1851
BtsCI GGATG 5 cut(s) 793, 1045, 1133, 1591, 1789
BtsIMutI CAGTG 2 cut(s) 860, 1658
Cac8I GCNNGC 3 cut(s) 600, 1158, 1644
CaiI CAGNNNCTG 3 cut(s) 388, 1334, 1679
CfoI GCGC 1 cut(s) 174
Cfr13I GGNCC 2 cut(s) 277, 1849
Cfr9I CCCGGG 1 cut(s) 711
CseI GACGC 2 cut(s) 97, 593
Csp6I GTAC 4 cut(s) 194, 1057, 1102, 1551
CviAII CATG 6 cut(s) 175, 355, 462, 599, 1684, 1780
CviQI GTAC 4 cut(s) 194, 1057, 1102, 1551
Eam1104I CTCTTC 2 cut(s) 299, 1392
EarI CTCTTC 2 cut(s) 299, 1392
EciI GGCGGA 1 cut(s) 1661
Ecl136II GAGCTC 1 cut(s) 685
Eco147I AGGCCT 1 cut(s) 73
Eco24I GRGCYC 1 cut(s) 687
Eco47I GGWCC 1 cut(s) 277
Eco53kI GAGCTC 1 cut(s) 685
Eco57I CTGAAG 8 cut(s) 284, 323, 348, 429, 1149, 1311, 1340, 1416
Eco88I CYCGRG 1 cut(s) 711
EcoICRI GAGCTC 1 cut(s) 685
EcoRI GAATTC 2 cut(s) 997, 1759
EcoRII CCWGG 5 cut(s) 91, 516, 660, 1059, 1553
EcoT38I GRGCYC 1 cut(s) 687
Esp3I CGTCTC 1 cut(s) 301
FaeI CATG 6 cut(s) 178, 358, 465, 602, 1687, 1783
FatI CATG 6 cut(s) 174, 354, 461, 598, 1683, 1779
FauI CCCGC 1 cut(s) 1492
FauNDI CATATG 2 cut(s) 613, 741
FokI GGATG 5 cut(s) 800, 1052, 1120, 1598, 1796
FriOI GRGCYC 1 cut(s) 687
FspBI CTAG 2 cut(s) 719, 1157
GlaI GCGC 1 cut(s) 173
GsaI CCCAGC 1 cut(s) 319
GsuI CTGGAG 3 cut(s) 48, 884, 1634
HaeIII GGCC 4 cut(s) 73, 1262, 1664, 1851
HapII CCGG 2 cut(s) 104, 712
HgaI GACGC 2 cut(s) 97, 593
HhaI GCGC 1 cut(s) 174
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 6 cut(s) 178, 358, 465, 602, 1687, 1783
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HincII GTYRAC 1 cut(s) 1114
HindII GTYRAC 1 cut(s) 1114
HindIII AAGCTT 1 cut(s) 365
HpaII CCGG 2 cut(s) 104, 712
HphI GGTGA 4 cut(s) 171, 1525, 1582, 1755
Hpy166II GTNNAC 3 cut(s) 437, 925, 1114
Hpy188III TCNNGA 8 cut(s) 425, 434, 446, 452, 625, 1414, 1441, 1733
Hpy8I GTNNAC 3 cut(s) 437, 925, 1114
HpyAV CCTTC 4 cut(s) 1171, 1345, 1654, 1840
HpyCH4III ACNGT 5 cut(s) 441, 981, 1118, 1206, 1336
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 6 cut(s) 178, 358, 465, 602, 1687, 1783
HspAI GCGC 1 cut(s) 172
KpnI GGTACC 1 cut(s) 1060
LmnI GCTCC 2 cut(s) 835, 1315
LweI GCATC 4 cut(s) 403, 1030, 1142, 1576
MaeI CTAG 2 cut(s) 719, 1157
MaeIII GTNAC 4 cut(s) 177, 981, 1528, 1570
MfeI CAATTG 1 cut(s) 746
MflI RGATCY 4 cut(s) 59, 259, 621, 1028
MhlI GDGCHC 3 cut(s) 687, 718, 1082
MlyI GAGTC 6 cut(s) 305, 476, 584, 614, 815, 1784
MmeI TCCRAC 2 cut(s) 813, 1344
MroXI GAANNNNTTC 2 cut(s) 1071, 1726
MslI CAYNNNNRTG 2 cut(s) 740, 773
MspA1I CMGCKG 6 cut(s) 496, 1046, 1499, 1582, 1667, 1676
MspI CCGG 2 cut(s) 104, 712
MspR9I CCNGG 7 cut(s) 93, 518, 662, 712, 713, 1061, 1555
MunI CAATTG 1 cut(s) 746
Mva1269I GAATGC 2 cut(s) 698, 1102
MvaI CCWGG 5 cut(s) 93, 518, 662, 1061, 1555
NciI CCSGG 2 cut(s) 712, 713
NdeI CATATG 2 cut(s) 613, 741
NheI GCTAGC 1 cut(s) 1156
NlaIII CATG 6 cut(s) 178, 358, 465, 602, 1687, 1783
NlaIV GGNNCC 2 cut(s) 1058, 1709
NmeAIII GCCGAG 1 cut(s) 598
NmuCI GTSAC 3 cut(s) 177, 1528, 1570
NspI RCATGY 2 cut(s) 178, 602
PaeI GCATGC 1 cut(s) 602
PceI AGGCCT 1 cut(s) 73
PctI GAATGC 2 cut(s) 698, 1102
PdmI GAANNNNTTC 2 cut(s) 1071, 1726
PfeI GAWTC 7 cut(s) 107, 374, 506, 701, 707, 1090, 1298
Pfl23II CGTACG 1 cut(s) 1101
PleI GAGTC 6 cut(s) 304, 475, 583, 613, 814, 1784
PpsI GAGTC 6 cut(s) 304, 475, 583, 613, 814, 1784
PshBI ATTAAT 1 cut(s) 900
Psp124BI GAGCTC 1 cut(s) 687
Psp6I CCWGG 5 cut(s) 91, 516, 660, 1059, 1553
PspFI CCCAGC 1 cut(s) 315
PspGI CCWGG 5 cut(s) 91, 516, 660, 1059, 1553
PspLI CGTACG 1 cut(s) 1101
PspN4I GGNNCC 2 cut(s) 1058, 1709
PspPI GGNCC 2 cut(s) 277, 1849
PstI CTGCAG 1 cut(s) 1498
PstNI CAGNNNCTG 3 cut(s) 388, 1334, 1679
PsuI RGATCY 4 cut(s) 59, 259, 621, 1028
PvuII CAGCTG 3 cut(s) 1046, 1582, 1676
RsaI GTAC 4 cut(s) 195, 1058, 1103, 1552
RsaNI GTAC 4 cut(s) 194, 1057, 1102, 1551
RseI CAYNNNNRTG 2 cut(s) 740, 773
SacI GAGCTC 1 cut(s) 687
Sau96I GGNCC 2 cut(s) 277, 1849
SchI GAGTC 6 cut(s) 305, 476, 584, 614, 815, 1784
ScrFI CCNGG 7 cut(s) 93, 518, 662, 712, 713, 1061, 1555
SduI GDGCHC 3 cut(s) 687, 718, 1082
SfaNI GCATC 4 cut(s) 403, 1030, 1142, 1576
SfcI CTRYAG 2 cut(s) 930, 1494
SinI GGWCC 1 cut(s) 277
SmaI CCCGGG 1 cut(s) 713
SmiMI CAYNNNNRTG 2 cut(s) 740, 773
SmlI CTYRAG 3 cut(s) 476, 631, 1412
SmoI CTYRAG 3 cut(s) 476, 631, 1412
SphI GCATGC 1 cut(s) 602
SseBI AGGCCT 1 cut(s) 73
SsiI CCGC 6 cut(s) 496, 755, 1499, 1563, 1646, 1665
SspMI CTAG 2 cut(s) 719, 1157
SstI GAGCTC 1 cut(s) 687
StuI AGGCCT 1 cut(s) 73
StyD4I CCNGG 7 cut(s) 91, 516, 660, 710, 711, 1059, 1553
TaaI ACNGT 5 cut(s) 441, 981, 1118, 1206, 1336
TaqI TCGA 3 cut(s) 76, 561, 1440
TauI GCSGC 3 cut(s) 758, 1565, 1667
TfiI GAWTC 7 cut(s) 107, 374, 506, 701, 707, 1090, 1298
TscAI CASTG 2 cut(s) 867, 1658
TseFI GTSAC 3 cut(s) 177, 1528, 1570
Tsp45I GTSAC 3 cut(s) 177, 1528, 1570
TspDTI ATGAA 8 cut(s) 545, 549, 705, 975, 981, 1311, 1419, 1772
TspGWI ACGGA 1 cut(s) 1391
TspMI CCCGGG 1 cut(s) 711
TspRI CASTG 2 cut(s) 867, 1658
VpaK11BI GGWCC 1 cut(s) 277
VspI ATTAAT 1 cut(s) 900
XapI RAATTY 6 cut(s) 537, 997, 1227, 1279, 1603, 1759
XceI RCATGY 2 cut(s) 178, 602
XmaI CCCGGG 1 cut(s) 711
XmnI GAANNNNTTC 2 cut(s) 1071, 1726
XspI CTAG 2 cut(s) 719, 1157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.