Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001479

Physical Location & Seq

Genomic Coordinates Reverse (-)

9565823 .. 9570547

Gene Structure 4725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g15372.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1848 bp

ATGCAGACACCAAAAGCAAAAAGTGGGTCTTTGGAAGTGCCTCAAAGGAAATCTCAAGCGACACCTAGAACTGCTAAGACATCTGGATCAAATCCTGATTCAGTATCCTCTCCAAATATGGCAACTCGGACCCCAAAAGGAAGTCCAAAAGTCGCTGAACGCAGGTCGCCACGAAGTCCAGTAGCTGAGAGGAAGCTGCCAAGAAGAGTGTCAGAATTGGAATCACAACTTTCTCAGTTGCAAGAGGATCTGAAGAGGGCAAAAGACCAGTTAAATTCCTCTGAGTCAGCGAAGAGGCGATCCCAGAAGGAGGCTGAAGAAGCCAAGAACCAACTATTAGCAAGGTCTGCAAAGCTTGAAGAGTCTGAACAGCAACTGCGGGAAATTTCTGCTTCTGAAGATGCTCGCATTCAAGAGCTCCGTCAACTTTCTCAGGATCGAGATAGAGCATGGGAATCTGAACTTCAGGCTGTTCAGCAGCAACGTTCGATGGATTCTACTGCCTTGGCTTCTGCTATTAATGAAATTCAGAAGCTAAAGGATCAGCTGGAAATGGTGGCGGACTCTAAAGCCACCCAGAGCAGGCATGCAGATTCAGCAGATGCCGAGATCCAGACCTTGAGAATGGAACTTTCTGAAACTCTTTCCCTGATTGAGAAATTGAAAACAGAGCTAAGTGATTGCAAAGAATCTGAAGCGAGGGCTGTAGATCTTATAGACAGTACTCGCATGCAATTGGAGAGGGCGAATGCAACCATAGAATCACTCCAATCTGATAAGACCAAAGGCTTGGAGTACTACAACTCTTTATCAATGGAGTTGGAGCAGTCTAAAGATCGCATTAAGTCACTGGAGAGTCTTGTGAGCAAACTTCAGGCAGAAGTTGCTATTAGTAACAGTAATCAGTTGGTGAACTCTTCAGGCAATTCAAAGCTTGCTCGCAAAGATGAAAATGAAGAAACAGTACAGTTAAAAGAGCTGAATTGTTTGAAATCTGAAGTGAGTCAATTGAGGTCTGCATTAGATGCGGCTGAGATGCGATACCAAGAAGAATATATTCAGAGCACACTGCAGATTAGAAGTGCATATGATGAAGTTGAATCTACAAAATCTGAATCATGTCGGAGGGAAGCTGAATGGGCATCAGAACTGAAGCATGTAAGGGATCAAGTTGAAGACTTGAGGACTCAGCTGATGGATAAAGAAAATGAAATGCAGAATCTGTCGGAGGAAAATGACAGGTTGAGCTTGCAGATTGAGAACAATCTATCAAATCAAGGCGGGGAATCTGAACTTGCAATGGAGCTGAAGAAGTCGGAAACTGCACTGGTAGAGTTGAAGGCCAGTTTGATGGATAAGGAGACAGAATTGCAGAACATCGCTGAGGAAAATGAAATGCTGAAGATTGAACTTAAAAATAAGGAAATAGAGAGCAACAAAGTTAATAATGACGCTGTTGTTTCGGCTGAAGCAACAAGGGAGGCAGAGCGAGAGGCTTTAATAAAGGTTGGCCATTTAACTGAAGAAGCTGATAAAAGTACTCAGAGAGTAGCACGAGTGACTGAGCAGCTGGATGCAGCACAGGCAGCGAATTCTGAATTGGAGGCTGAGTTAAGGAGGTTGAAGGTGCAGGCAGATCAGTGGAGGAAGGCCGCTGAGGCGGCTGCGGCTATCCTATCAACAGGCAACAACGGGAAGTTTGTGGAGAGAACAGGTTCTCTTGACAGCCACTACAATCCCTTGAGTTCACCTTATTCAGAAGACTTGGACGATGACTCACCAAAGAAGAAAAATGTGACCATGTTAAAGAAGATTGGTGTGTTATGGAAGAAGCAGGGACAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009507 GO:0009536 GO:0009664 GO:0009987 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

No domains found.

Protein Analysis

616

Amino Acids

69.14

Weight (kDa)

5.16

Isoelectric Point (pI)

58.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37080 AT2G37080 AT2G37080 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350
fragaria_vesca	FvH4_6g15372 FvH4_6g15372 FvH4_6g15372 FvH4_6g15372
malus_domestica	MD04G1104300.v1.1 MD12G1124200.v1.1
prunus_persica	Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1
pyrus_communis	pycom04g09910 pycom12g12260
rosa_chinensis	RchiOBHm_Chr2g0099711 RchiOBHm_Chr2g0125251 RchiOBHm_Chr3g0468851
rosa_laevigata	RLG00000024406
rosa_multiflora	Rmu_sc0001639.1_g000019
rosa_roxburghii	Rroxscaffold_4G00315970 Rroxscaffold_6G00412520
rosa_rugosa	Rorug03G0096800 Rorug03G0096900 Rorug06G0151400
rosa_samantha	Rh2BG246400 Rh2CG237000 Rh3AG146600 Rh3AG146700 Rh3BG169100 Rh3BG169200 Rh3DG205900 Rh4AG101700 Rh4CG109700 Rh4DG262400 Rh7BG297800 Rh7DG377800
rosa_wichuraiana	Rw2G026840 Rw3G013790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	153
AciI	CCGC	7 cut(s)	379, 560, 1028, 1281, 1653, 1661, 1667
AclI	AACGTT	1 cut(s)	484
AclWI	GGATC	7 cut(s)	94, 255, 294, 444, 549, 604, 1173
AcoI	YGGCCR	1 cut(s)	1510
AcsI	RAATTY	4 cut(s)	274, 384, 525, 1591
AfaI	GTAC	4 cut(s)	724, 797, 966, 1540
AfiI	CCNNNNNNNGG	2 cut(s)	310, 582
AjuI	GAANNNNNNNTTGG	2 cut(s)	1583, 1615
Alw21I	GWGCWC	2 cut(s)	420, 1067
Alw26I	GTCTC	1 cut(s)	1355
AlwI	GGATC	7 cut(s)	94, 255, 294, 444, 549, 604, 1173
AlwNI	CAGNNNCTG	3 cut(s)	185, 376, 1222
AoxI	GGCC	3 cut(s)	1341, 1510, 1650
ApeKI	GCWGC	6 cut(s)	196, 478, 1567, 1577, 1586, 1664
ApoI	RAATTY	4 cut(s)	274, 384, 525, 1591
ArsI	GACNNNNNNTTYG	2 cut(s)	11, 43
AseI	ATTAAT	1 cut(s)	519
Asp700I	GAANNNNTTC	2 cut(s)	1056, 1714
AspS9I	GGNCC	1 cut(s)	129
AsuHPI	GGTGA	3 cut(s)	922, 1740, 1770
AvaII	GGWCC	1 cut(s)	129
BalI	TGGCCA	1 cut(s)	1512
BanII	GRGCYC	1 cut(s)	420
BarI	GAAGNNNNNNTAC	2 cut(s)	948, 980
BauI	CACGAG	1 cut(s)	1554
BbsI	GAAGAC	2 cut(s)	1182, 1767
Bbv12I	GWGCWC	2 cut(s)	420, 1067
BbvCI	CCTCAGC	2 cut(s)	1383, 1656
BbvI	GCAGC	6 cut(s)	183, 490, 1579, 1589, 1598, 1651
BccI	CCATC	3 cut(s)	484, 1189, 1345
BciVI	GTATCC	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	1355
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	2 cut(s)	705, 1070
BfuAI	ACCTGC	1 cut(s)	153
BfuI	GTATCC	1 cut(s)	115
BglI	GCCNNNNNGGC	1 cut(s)	1658
BglII	AGATCT	1 cut(s)	709
BmcAI	AGTACT	3 cut(s)	724, 797, 1540
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	1 cut(s)	131
BmsI	GCATC	6 cut(s)	391, 592, 1015, 1026, 1151, 1564
BpiI	GAAGAC	2 cut(s)	1182, 1767
BpmI	CTGGAG	1 cut(s)	872
Bpu10I	CCTNAGC	2 cut(s)	1383, 1656
BpuEI	CTTGAG	4 cut(s)	39, 640, 1201, 1762
BsaJI	CCNNGG	1 cut(s)	504
BsaXI	ACNNNNNCTCC	2 cut(s)	1595, 1625
Bsc4I	CCNNNNNNNGG	2 cut(s)	310, 582
Bse1I	ACTGG	5 cut(s)	179, 268, 855, 1332, 1344
Bse3DI	GCAATG	1 cut(s)	1305
BseDI	CCNNGG	1 cut(s)	504
BseGI	GGATG	1 cut(s)	1579
BseLI	CCNNNNNNNGG	2 cut(s)	310, 582
BseMI	GCAATG	1 cut(s)	1305
BseNI	ACTGG	5 cut(s)	179, 268, 855, 1332, 1344
BseXI	GCAGC	6 cut(s)	183, 490, 1579, 1589, 1598, 1651
BsgI	GTGCAG	2 cut(s)	1308, 1649
BshFI	GGCC	3 cut(s)	1343, 1512, 1652
BsiHKAI	GWGCWC	2 cut(s)	420, 1067
BslI	CCNNNNNNNGG	2 cut(s)	310, 582
BsmAI	GTCTC	1 cut(s)	1355
BsmI	GAATGC	2 cut(s)	408, 754
BsnI	GGCC	3 cut(s)	1343, 1512, 1652
Bsp1286I	GDGCHC	2 cut(s)	420, 1067
BspACI	CCGC	7 cut(s)	379, 560, 1028, 1281, 1653, 1661, 1667
BspANI	GGCC	3 cut(s)	1343, 1512, 1652
BspLI	GGNNCC	1 cut(s)	131
BspMAI	CTGCAG	1 cut(s)	1074
BspMI	ACCTGC	1 cut(s)	153
BspPI	GGATC	7 cut(s)	94, 255, 294, 444, 549, 604, 1173
BsrDI	GCAATG	1 cut(s)	1305
BsrI	ACTGG	5 cut(s)	179, 268, 855, 1332, 1344
BssECI	CCNNGG	1 cut(s)	504
BssSI	CACGAG	1 cut(s)	1554
BssT1I	CCWWGG	1 cut(s)	504
Bst2BI	CACGAG	1 cut(s)	1554
Bst4CI	ACNGT	4 cut(s)	722, 899, 964, 969
Bst6I	CTCTTC	5 cut(s)	199, 248, 287, 354, 922
BstAPI	GCANNNNNTGC	3 cut(s)	347, 884, 1025
BstC8I	GCNNGC	8 cut(s)	406, 584, 588, 731, 936, 940, 1250, 1632
BstF5I	GGATG	1 cut(s)	1579
BstMAI	GTCTC	1 cut(s)	1355
BstNSI	RCATGY	3 cut(s)	590, 733, 1160
BstSFI	CTRYAG	2 cut(s)	705, 1070
BstV1I	GCAGC	6 cut(s)	183, 490, 1579, 1589, 1598, 1651
BstV2I	GAAGAC	2 cut(s)	1182, 1767
BstX2I	RGATCY	3 cut(s)	247, 609, 709
BstXI	CCANNNNNNTGG	2 cut(s)	790, 1351
BstYI	RGATCY	3 cut(s)	247, 609, 709
BsuI	GTATCC	1 cut(s)	115
BsuRI	GGCC	3 cut(s)	1343, 1512, 1652
BtgZI	GCGATG	1 cut(s)	1363
BtsCI	GGATG	1 cut(s)	1579
BtsI	GCAGTG	1 cut(s)	1067
BtsIMutI	CAGTG	4 cut(s)	848, 1067, 1325, 1646
BveI	ACCTGC	1 cut(s)	153
Cac8I	GCNNGC	8 cut(s)	406, 584, 588, 731, 936, 940, 1250, 1632
CaiI	CAGNNNCTG	3 cut(s)	185, 376, 1222
Cfr13I	GGNCC	1 cut(s)	129
CseI	GACGC	1 cut(s)	1460
Csp6I	GTAC	4 cut(s)	723, 796, 965, 1539
CviAII	CATG	6 cut(s)	450, 587, 730, 1119, 1157, 1801
CviQI	GTAC	4 cut(s)	723, 796, 965, 1539
EaeI	YGGCCR	1 cut(s)	1510
Eam1104I	CTCTTC	5 cut(s)	199, 248, 287, 354, 922
EarI	CTCTTC	5 cut(s)	199, 248, 287, 354, 922
EciI	GGCGGA	1 cut(s)	575
Ecl136II	GAGCTC	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	504
Eco24I	GRGCYC	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	418
EcoICRI	GAGCTC	1 cut(s)	418
EcoRI	GAATTC	1 cut(s)	1591
EcoT14I	CCWWGG	1 cut(s)	504
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	504
FaeI	CATG	6 cut(s)	453, 590, 733, 1122, 1160, 1804
FalI	AAGNNNNNCTT	2 cut(s)	13, 45
FatI	CATG	6 cut(s)	449, 586, 729, 1118, 1156, 1800
FauI	CCCGC	2 cut(s)	372, 1274
FauNDI	CATATG	1 cut(s)	1087
FokI	GGATG	1 cut(s)	1586
FriOI	GRGCYC	1 cut(s)	420
FspBI	CTAG	1 cut(s)	66
GsuI	CTGGAG	1 cut(s)	872
HaeIII	GGCC	3 cut(s)	1343, 1512, 1652
HgaI	GACGC	1 cut(s)	1460
Hin1II	CATG	6 cut(s)	453, 590, 733, 1122, 1160, 1804
HincII	GTYRAC	1 cut(s)	425
HindII	GTYRAC	1 cut(s)	425
HindIII	AAGCTT	2 cut(s)	353, 932
HphI	GGTGA	3 cut(s)	922, 1740, 1770
Hpy166II	GTNNAC	3 cut(s)	425, 913, 1748
Hpy188III	TCNNGA	7 cut(s)	84, 95, 413, 434, 440, 613, 1721
Hpy8I	GTNNAC	3 cut(s)	425, 913, 1748
HpyAV	CCTTC	4 cut(s)	301, 1333, 1618, 1642
HpyCH4III	ACNGT	4 cut(s)	722, 899, 964, 969
HpyCH4IV	ACGT	1 cut(s)	484
HpySE526I	ACGT	1 cut(s)	484
Hsp92II	CATG	6 cut(s)	453, 590, 733, 1122, 1160, 1804
LmnI	GCTCC	3 cut(s)	423, 823, 1303
Lsp1109I	GCAGC	6 cut(s)	183, 490, 1579, 1589, 1598, 1651
LweI	GCATC	6 cut(s)	391, 592, 1015, 1026, 1151, 1564
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	1 cut(s)	484
MaeIII	GTNAC	4 cut(s)	846, 893, 1558, 1795
MfeI	CAATTG	2 cut(s)	734, 1007
MflI	RGATCY	3 cut(s)	247, 609, 709
MhlI	GDGCHC	2 cut(s)	420, 1067
MlsI	TGGCCA	1 cut(s)	1512
MluNI	TGGCCA	1 cut(s)	1512
MlyI	GAGTC	7 cut(s)	293, 371, 557, 865, 1012, 1180, 1769
MmeI	TCCRAC	4 cut(s)	801, 1103, 1206, 1296
Mox20I	TGGCCA	1 cut(s)	1512
MroXI	GAANNNNTTC	2 cut(s)	1056, 1714
MscI	TGGCCA	1 cut(s)	1512
Msp20I	TGGCCA	1 cut(s)	1512
MspA1I	CMGCKG	4 cut(s)	547, 1192, 1570, 1655
MunI	CAATTG	2 cut(s)	734, 1007
Mva1269I	GAATGC	2 cut(s)	408, 754
NdeI	CATATG	1 cut(s)	1087
NlaIII	CATG	6 cut(s)	453, 590, 733, 1122, 1160, 1804
NlaIV	GGNNCC	1 cut(s)	131
NmeAIII	GCCGAG	1 cut(s)	631
NmuCI	GTSAC	3 cut(s)	846, 1558, 1795
NspI	RCATGY	3 cut(s)	590, 733, 1160
PaeI	GCATGC	2 cut(s)	590, 733
PctI	GAATGC	2 cut(s)	408, 754
PdmI	GAANNNNTTC	2 cut(s)	1056, 1714
PleI	GAGTC	7 cut(s)	292, 370, 557, 864, 1011, 1180, 1769
PpsI	GAGTC	7 cut(s)	292, 370, 557, 864, 1011, 1180, 1769
PshBI	ATTAAT	1 cut(s)	519
Psp124BI	GAGCTC	1 cut(s)	420
Psp1406I	AACGTT	1 cut(s)	484
PspN4I	GGNNCC	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	129
PstI	CTGCAG	1 cut(s)	1074
PstNI	CAGNNNCTG	3 cut(s)	185, 376, 1222
PsuI	RGATCY	3 cut(s)	247, 609, 709
PvuII	CAGCTG	3 cut(s)	547, 1192, 1570
RsaI	GTAC	4 cut(s)	724, 797, 966, 1540
RsaNI	GTAC	4 cut(s)	723, 796, 965, 1539
SacI	GAGCTC	1 cut(s)	420
Sau96I	GGNCC	1 cut(s)	129
ScaI	AGTACT	3 cut(s)	724, 797, 1540
SchI	GAGTC	7 cut(s)	293, 371, 557, 865, 1012, 1180, 1769
SduI	GDGCHC	2 cut(s)	420, 1067
SfaNI	GCATC	6 cut(s)	391, 592, 1015, 1026, 1151, 1564
SfcI	CTRYAG	2 cut(s)	705, 1070
SinI	GGWCC	1 cut(s)	129
SmlI	CTYRAG	4 cut(s)	54, 619, 1180, 1741
SmoI	CTYRAG	4 cut(s)	54, 619, 1180, 1741
SphI	GCATGC	2 cut(s)	590, 733
SsiI	CCGC	7 cut(s)	379, 560, 1028, 1281, 1653, 1661, 1667
SspMI	CTAG	1 cut(s)	66
SstI	GAGCTC	1 cut(s)	420
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	4 cut(s)	722, 899, 964, 969
TaiI	ACGT	1 cut(s)	487
TaqI	TCGA	2 cut(s)	439, 488
TatI	WGTACW	4 cut(s)	722, 795, 964, 1538
TauI	GCSGC	4 cut(s)	1031, 1655, 1664, 1670
TscAI	CASTG	4 cut(s)	855, 1074, 1332, 1646
TseFI	GTSAC	3 cut(s)	846, 1558, 1795
TseI	GCWGC	6 cut(s)	196, 478, 1567, 1577, 1586, 1664
Tsp45I	GTSAC	3 cut(s)	846, 1558, 1795
TspDTI	ATGAA	6 cut(s)	537, 963, 969, 1107, 1224, 1407
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	4 cut(s)	855, 1074, 1332, 1646
VpaK11BI	GGWCC	1 cut(s)	129
VspI	ATTAAT	1 cut(s)	519
XapI	RAATTY	4 cut(s)	274, 384, 525, 1591
XceI	RCATGY	3 cut(s)	590, 733, 1160
XmnI	GAANNNNTTC	2 cut(s)	1056, 1714
XspI	CTAG	1 cut(s)	66
ZrmI	AGTACT	3 cut(s)	724, 797, 1540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.