Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001479

Physical Location & Seq

Genomic Coordinates Forward (+)

48061667 .. 48063640

Gene Structure 1974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG262400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTTTTTCAAATTGGAGACCAAGTTAAGGAGATTAAAGGTGCAGTCAGCTAAGTGGAGGAAGACCGCTGAGGCAGCTGCTGCTATTCTTTCAACAAGAAACAACGAGAAGTTTGTGACAGAACAAGTTCTCTTGACAGCCACTACAATCCCTTGGGTTCACCTTATTCAGAAGACTTGGACGATGACTCGCCAAAGACATGTTCAAGAAGATTGGTCTGTTATGGAAGAAGGGCCAAAAGTATATGGAATTATGCCACAGAGGCTTGAGAACATTAATCCTAAGAGTGGTCGTCGTGGCCGAAACATCGGCGGCCTCCAGCACTTTGTTTTTGAAAGTTTCAATCTTTCTCTCAATGTTTGGGTCGATCTATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009507 GO:0009536 GO:0009664 GO:0009987 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

14.64

Weight (kDa)

10.33

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37080 AT2G37080 AT2G37080 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350
fragaria_vesca	FvH4_6g15372 FvH4_6g15372 FvH4_6g15372 FvH4_6g15372
malus_domestica	MD04G1104300.v1.1 MD12G1124200.v1.1
prunus_persica	Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1
pyrus_communis	pycom04g09910 pycom12g12260
rosa_chinensis	RchiOBHm_Chr2g0099711 RchiOBHm_Chr2g0125251 RchiOBHm_Chr3g0468851
rosa_laevigata	RLG00000024406
rosa_multiflora	Rmu_sc0001639.1_g000019
rosa_roxburghii	Rroxscaffold_4G00315970 Rroxscaffold_6G00412520
rosa_rugosa	Rorug03G0096800 Rorug03G0096900 Rorug06G0151400
rosa_samantha	Rh2BG246400 Rh2CG237000 Rh3AG146600 Rh3AG146700 Rh3BG169100 Rh3BG169200 Rh3DG205900 Rh4AG101700 Rh4CG109700 Rh4DG262400 Rh7BG297800 Rh7DG377800
rosa_wichuraiana	Rw2G026840 Rw3G013790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	66, 312
AcoI	YGGCCR	1 cut(s)	298
AfiI	CCNNNNNNNGG	2 cut(s)	27, 287
AflIII	ACRYGT	1 cut(s)	199
AgsI	TTSAA	5 cut(s)	10, 93, 206, 335, 343
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	2 cut(s)	50, 77
AluI	AGCT	2 cut(s)	50, 77
Alw26I	GTCTC	1 cut(s)	11
AlwNI	CAGNNNCTG	1 cut(s)	80
AoxI	GGCC	3 cut(s)	233, 298, 313
ApeKI	GCWGC	3 cut(s)	74, 77, 80
AseI	ATTAAT	1 cut(s)	276
Asp700I	GAANNNNTTC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	152
BbsI	GAAGAC	2 cut(s)	68, 179
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	3 cut(s)	64, 67, 86
BcoDI	GTCTC	1 cut(s)	11
BglI	GCCNNNNNGGC	1 cut(s)	262
BisI	GCNGC	4 cut(s)	75, 78, 81, 313
BlsI	GCNGC	4 cut(s)	76, 79, 82, 314
BmgT120I	GGNCC	1 cut(s)	233
BpiI	GAAGAC	2 cut(s)	68, 179
BpmI	CTGGAG	1 cut(s)	302
Bpu10I	CCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	287
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	152
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 287
BseDI	CCNNGG	1 cut(s)	152
BseLI	CCNNNNNNNGG	2 cut(s)	27, 287
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	3 cut(s)	64, 67, 86
BsgI	GTGCAG	1 cut(s)	62
BshFI	GGCC	3 cut(s)	235, 300, 315
BslI	CCNNNNNNNGG	2 cut(s)	27, 287
BsmAI	GTCTC	1 cut(s)	11
BsnI	GGCC	3 cut(s)	235, 300, 315
Bso31I	GGTCTC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	367
BspACI	CCGC	2 cut(s)	66, 312
BspANI	GGCC	3 cut(s)	235, 300, 315
BspCNI	CTCAG	1 cut(s)	61
BspTNI	GGTCTC	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	152
BssMI	GATC	1 cut(s)	367
BssT1I	CCWWGG	1 cut(s)	152
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstDEI	CTNAG	3 cut(s)	51, 69, 282
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 80, 262
BstNSI	RCATGY	1 cut(s)	203
BstV1I	GCAGC	3 cut(s)	64, 67, 86
BstV2I	GAAGAC	2 cut(s)	68, 179
BsuRI	GGCC	3 cut(s)	235, 300, 315
CaiI	CAGNNNCTG	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	233
CviAII	CATG	1 cut(s)	200
CviJI	RGCY	7 cut(s)	50, 77, 140, 235, 265, 300, 315
CviKI_1	RGCY	7 cut(s)	50, 77, 140, 235, 265, 300, 315
DdeI	CTNAG	3 cut(s)	51, 69, 282
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
EaeI	YGGCCR	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	152
Eco31I	GGTCTC	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	152
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	1 cut(s)	203
FaiI	YATR	5 cut(s)	201, 224, 244, 246, 254
FatI	CATG	1 cut(s)	199
Fnu4HI	GCNGC	4 cut(s)	75, 78, 81, 313
Fsp4HI	GCNGC	4 cut(s)	75, 78, 81, 313
GluI	GCNGC	4 cut(s)	75, 78, 81, 313
GsuI	CTGGAG	1 cut(s)	302
HaeIII	GGCC	3 cut(s)	235, 300, 315
Hin1II	CATG	1 cut(s)	203
HinfI	GANTC	1 cut(s)	187
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	2 cut(s)	133, 206
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	1 cut(s)	297
HpyAV	CCTTC	1 cut(s)	224
HpyCH4V	TGCA	1 cut(s)	43
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 80, 262
HpyF3I	CTNAG	3 cut(s)	51, 69, 282
Hsp92II	CATG	1 cut(s)	203
Kzo9I	GATC	1 cut(s)	367
LpnPI	CCDG	1 cut(s)	332
Lsp1109I	GCAGC	3 cut(s)	64, 67, 86
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	4 cut(s)	73, 184, 221, 239
MluCI	AATT	2 cut(s)	11, 249
MlyI	GAGTC	1 cut(s)	181
MnlI	CCTC	4 cut(s)	51, 64, 255, 326
MroXI	GAANNNNTTC	1 cut(s)	126
MseI	TTAA	3 cut(s)	26, 35, 276
MspA1I	CMGCKG	2 cut(s)	68, 77
MwoI	GCNNNNNNNGC	3 cut(s)	74, 80, 262
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	1 cut(s)	203
NmuCI	GTSAC	1 cut(s)	115
NspI	RCATGY	1 cut(s)	203
PciI	ACATGT	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	1 cut(s)	298
PdmI	GAANNNNTTC	1 cut(s)	126
PkrI	GCNGC	4 cut(s)	76, 79, 82, 314
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PscI	ACATGT	1 cut(s)	199
PshBI	ATTAAT	1 cut(s)	276
PspPI	GGNCC	1 cut(s)	233
PstNI	CAGNNNCTG	1 cut(s)	80
PvuII	CAGCTG	1 cut(s)	77
SaqAI	TTAA	3 cut(s)	26, 35, 276
SatI	GCNGC	4 cut(s)	75, 78, 81, 313
Sau3AI	GATC	1 cut(s)	367
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	181
SetI	ASST	4 cut(s)	42, 52, 79, 165
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	2 cut(s)	11, 249
SsiI	CCGC	2 cut(s)	66, 312
StyI	CCWWGG	1 cut(s)	152
TaqI	TCGA	1 cut(s)	366
TasI	AATT	2 cut(s)	11, 249
TauI	GCSGC	1 cut(s)	315
Tru1I	TTAA	3 cut(s)	26, 35, 276
Tru9I	TTAA	3 cut(s)	26, 35, 276
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	3 cut(s)	74, 77, 80
Tsp45I	GTSAC	1 cut(s)	115
VspI	ATTAAT	1 cut(s)	276
XceI	RCATGY	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.