Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001479

Physical Location & Seq

Genomic Coordinates Reverse (-)

12948130 .. 12949274

Gene Structure 1145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG146600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTCTAGCGTCGGTCTAGGGCCAGGCATAGTGTTCCTTTTTCTTTGGGTTTCTTTCTGCGGCATGATTGGGAGCATTGGAGAACGGTTGCGGCATTGGGTTATGGTTTCTGGGTTTGGACCTTGGCCAGTTTGGTCGGAAACCGCAGTGGTAGAGTTGAAGGCCAGTTTGATGGATAAGGAGACAGAATTGCAGAACATCGCTGAGGAAAATGAAATGCTGAAGATTGAACTTAAAAACAAGGAAATGGAGAGGAACAATGTCAATGACGACGCTGTTGTTTCAGCTGAAGGGGAGGCAGAGCGAGAGGCTGTAATAAAGGTTGGCCATTTAACTGAAGAAGCTGATAAAAGTACACAGAGAGCAGCACGAGCGACTGAGCAGCTGGATGCAGCACAGGCTGCAAATTCTGAATTGGAGGCTGAGTTAAGGAGGTTAAAGGTGCAGTCAGATCAGTGGAGGAAGGCCGCTGAGGCGGCTGCTGCTATTCTTTCAACAGGAAACAACGGGAAGTTTGTGGAGAGAACAGGTTCCCTTGAAAGCCACTACAATCCCCTGAGTTCACCTTATTCAGAAGACTTGGACGATGACTCGCCAAAGAAGAAAAATGTGACCATGTTGAAGAAGATTGGTGTTCTATGGAAGAAGGGCCAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009507 GO:0009536 GO:0009664 GO:0009987 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

No domains found.

Protein Analysis

219

Amino Acids

24.26

Weight (kDa)

5.2

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37080 AT2G37080 AT2G37080 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350
fragaria_vesca	FvH4_6g15372 FvH4_6g15372 FvH4_6g15372 FvH4_6g15372
malus_domestica	MD04G1104300.v1.1 MD12G1124200.v1.1
prunus_persica	Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1
pyrus_communis	pycom04g09910 pycom12g12260
rosa_chinensis	RchiOBHm_Chr2g0099711 RchiOBHm_Chr2g0125251 RchiOBHm_Chr3g0468851
rosa_laevigata	RLG00000024406
rosa_multiflora	Rmu_sc0001639.1_g000019
rosa_roxburghii	Rroxscaffold_4G00315970 Rroxscaffold_6G00412520
rosa_rugosa	Rorug03G0096800 Rorug03G0096900 Rorug06G0151400
rosa_samantha	Rh2BG246400 Rh2CG237000 Rh3AG146600 Rh3AG146700 Rh3BG169100 Rh3BG169200 Rh3DG205900 Rh4AG101700 Rh4CG109700 Rh4DG262400 Rh7BG297800 Rh7DG377800
rosa_wichuraiana	Rw2G026840 Rw3G013790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	60, 91, 144, 468, 476
AcoI	YGGCCR	2 cut(s)	125, 325
AcsI	RAATTY	1 cut(s)	406
AcuI	CTGAAG	3 cut(s)	242, 309, 357
AfaI	GTAC	1 cut(s)	355
AgsI	TTSAA	5 cut(s)	160, 230, 495, 539, 622
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	3 cut(s)	287, 344, 385
AluI	AGCT	3 cut(s)	287, 344, 385
Alw26I	GTCTC	1 cut(s)	176
AoxI	GGCC	6 cut(s)	20, 125, 162, 325, 465, 649
ApeKI	GCWGC	6 cut(s)	365, 382, 392, 401, 479, 482
ApoI	RAATTY	1 cut(s)	406
Asp700I	GAANNNNTTC	1 cut(s)	529
AspS9I	GGNCC	3 cut(s)	20, 119, 649
AsuHPI	GGTGA	1 cut(s)	555
AvaII	GGWCC	1 cut(s)	119
BalI	TGGCCA	2 cut(s)	127, 327
BauI	CACGAG	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	582
BbvCI	CCTCAGC	2 cut(s)	204, 471
BbvI	GCAGC	6 cut(s)	377, 388, 394, 404, 466, 469
BccI	CCATC	1 cut(s)	166
BciT130I	CCWGG	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	2 cut(s)	6, 17
BglI	GCCNNNNNGGC	1 cut(s)	473
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	3 cut(s)	20, 119, 649
BmiI	GGNNCC	1 cut(s)	532
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	379
BpiI	GAAGAC	1 cut(s)	582
Bpu10I	CCTNAGC	2 cut(s)	204, 471
BsaJI	CCNNGG	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bse1I	ACTGG	2 cut(s)	128, 165
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	122
BseGI	GGATG	1 cut(s)	394
BseMII	CTCAG	5 cut(s)	195, 369, 414, 462, 548
BseNI	ACTGG	2 cut(s)	128, 165
BseXI	GCAGC	6 cut(s)	377, 388, 394, 404, 466, 469
BsgI	GTGCAG	1 cut(s)	464
BshFI	GGCC	6 cut(s)	22, 127, 164, 327, 467, 651
BsmAI	GTCTC	1 cut(s)	176
BsnI	GGCC	6 cut(s)	22, 127, 164, 327, 467, 651
Bsp143I	GATC	1 cut(s)	451
BspACI	CCGC	5 cut(s)	60, 91, 144, 468, 476
BspANI	GGCC	6 cut(s)	22, 127, 164, 327, 467, 651
BspCNI	CTCAG	5 cut(s)	196, 370, 415, 463, 549
BspLI	GGNNCC	1 cut(s)	532
BsrI	ACTGG	2 cut(s)	128, 165
BssECI	CCNNGG	1 cut(s)	122
BssMI	GATC	1 cut(s)	451
BssSI	CACGAG	1 cut(s)	369
BssT1I	CCWWGG	1 cut(s)	122
Bst2BI	CACGAG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	87
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstDEI	CTNAG	5 cut(s)	204, 378, 423, 471, 557
BstF5I	GGATG	1 cut(s)	394
BstKTI	GATC	1 cut(s)	454
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	451
BstMWI	GCNNNNNNNGC	6 cut(s)	371, 398, 401, 473, 476, 482
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	22
BstV1I	GCAGC	6 cut(s)	377, 388, 394, 404, 466, 469
BstV2I	GAAGAC	1 cut(s)	582
BstXI	CCANNNNNNTGG	1 cut(s)	172
BsuRI	GGCC	6 cut(s)	22, 127, 164, 327, 467, 651
BtgZI	GCGATG	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	394
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	2 cut(s)	153, 461
Cfr13I	GGNCC	3 cut(s)	20, 119, 649
CseI	GACGC	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	354
CviAII	CATG	2 cut(s)	64, 616
CviQI	GTAC	1 cut(s)	354
DdeI	CTNAG	5 cut(s)	204, 378, 423, 471, 557
DpnI	GATC	1 cut(s)	453
DpnII	GATC	1 cut(s)	451
EaeI	YGGCCR	2 cut(s)	125, 325
Eco130I	CCWWGG	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	119
Eco57I	CTGAAG	3 cut(s)	242, 309, 357
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	122
FaeI	CATG	2 cut(s)	67, 619
FaiI	YATR	5 cut(s)	29, 65, 104, 617, 640
FatI	CATG	2 cut(s)	63, 615
FokI	GGATG	1 cut(s)	401
FspBI	CTAG	2 cut(s)	6, 17
HaeIII	GGCC	6 cut(s)	22, 127, 164, 327, 467, 651
HgaI	GACGC	1 cut(s)	281
Hin1II	CATG	2 cut(s)	67, 619
HinfI	GANTC	1 cut(s)	590
HphI	GGTGA	1 cut(s)	555
Hpy166II	GTNNAC	2 cut(s)	356, 563
Hpy188I	TCNGA	4 cut(s)	139, 412, 451, 574
Hpy8I	GTNNAC	2 cut(s)	356, 563
Hpy99I	CGWCG	2 cut(s)	14, 275
HpyAV	CCTTC	4 cut(s)	154, 284, 457, 640
HpyCH4III	ACNGT	1 cut(s)	87
HpyCH4V	TGCA	4 cut(s)	193, 392, 404, 445
HpyF10VI	GCNNNNNNNGC	6 cut(s)	371, 398, 401, 473, 476, 482
HpyF3I	CTNAG	5 cut(s)	204, 378, 423, 471, 557
Hsp92II	CATG	2 cut(s)	67, 619
Kzo9I	GATC	1 cut(s)	451
LmnI	GCTCC	1 cut(s)	72
Lsp1109I	GCAGC	6 cut(s)	377, 388, 394, 404, 466, 469
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	2 cut(s)	6, 17
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	1 cut(s)	453
MboI	GATC	1 cut(s)	451
MboII	GAAGA	7 cut(s)	235, 350, 587, 613, 634, 637, 655
MlsI	TGGCCA	2 cut(s)	127, 327
MluCI	AATT	3 cut(s)	188, 406, 413
MluNI	TGGCCA	2 cut(s)	127, 327
MlyI	GAGTC	1 cut(s)	584
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	8 cut(s)	199, 246, 289, 301, 412, 426, 453, 466
Mox20I	TGGCCA	2 cut(s)	127, 327
MroXI	GAANNNNTTC	1 cut(s)	529
MscI	TGGCCA	2 cut(s)	127, 327
MseI	TTAA	4 cut(s)	234, 332, 428, 437
Msp20I	TGGCCA	2 cut(s)	127, 327
MspA1I	CMGCKG	3 cut(s)	287, 385, 470
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	6 cut(s)	371, 398, 401, 473, 476, 482
NdeII	GATC	1 cut(s)	451
NlaIII	CATG	2 cut(s)	67, 619
NlaIV	GGNNCC	1 cut(s)	532
NmuCI	GTSAC	1 cut(s)	610
PdmI	GAANNNNTTC	1 cut(s)	529
PleI	GAGTC	1 cut(s)	584
PpsI	GAGTC	1 cut(s)	584
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	532
PspPI	GGNCC	3 cut(s)	20, 119, 649
PvuII	CAGCTG	2 cut(s)	287, 385
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
SaqAI	TTAA	4 cut(s)	234, 332, 428, 437
Sau3AI	GATC	1 cut(s)	451
Sau96I	GGNCC	3 cut(s)	20, 119, 649
SchI	GAGTC	1 cut(s)	584
ScrFI	CCNGG	1 cut(s)	24
SetI	ASST	9 cut(s)	124, 289, 324, 346, 387, 437, 444, 532, 568
SfaNI	GCATC	1 cut(s)	379
SinI	GGWCC	1 cut(s)	119
Sse9I	AATT	3 cut(s)	188, 406, 413
SsiI	CCGC	5 cut(s)	60, 91, 144, 468, 476
SspMI	CTAG	2 cut(s)	6, 17
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	1 cut(s)	122
TaaI	ACNGT	1 cut(s)	87
TasI	AATT	3 cut(s)	188, 406, 413
TatI	WGTACW	1 cut(s)	353
TauI	GCSGC	4 cut(s)	63, 94, 470, 479
Tru1I	TTAA	4 cut(s)	234, 332, 428, 437
Tru9I	TTAA	4 cut(s)	234, 332, 428, 437
TscAI	CASTG	2 cut(s)	153, 461
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	6 cut(s)	365, 382, 392, 401, 479, 482
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	1 cut(s)	228
TspRI	CASTG	2 cut(s)	153, 461
VpaK11BI	GGWCC	1 cut(s)	119
XapI	RAATTY	1 cut(s)	406
XmnI	GAANNNNTTC	1 cut(s)	529
XspI	CTAG	2 cut(s)	6, 17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.