Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001639.1

Orthogroup ID

OG0001479

Physical Location & Seq

Genomic Coordinates Forward (+)

86426 .. 88972

Gene Structure 2547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001639.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1851 bp

atgcagactccaaaagcaaaaagtggctctttggaagtgcctcaaagaaaatctccagcaacacctaaaactgccaagacatctggatcaaatcctgattcagtatcctctccgaatatggcaactaggaccccaaaaggaagtccaaaagtcactgaacgcaggtcgccacgaagtccagtatccgagaggaagctgccaaaaagagtgtcagaattggaatcacaactttctcagttgcaagaggatctgaagagggcaaaggaccagttaaactcatctgagtcagcgaagaggcgatgccagaaggaggctgaagaagccaagaaccagctattagcaatgtctgcaaagcttgaagagtctgaacagcaactgcaggaaatttcttcttctgaagatgctcgtattcaagagctccgtcaactttctcaggatcgagatagagcatgggaatctgaacttcaggctgttcaacagcagcgttcgatggattccactgccttggcttctgccatcaatgaaattcagaagctaaagggtcaggtggaaatggtggcggactctgaagccacccagaggaggcatgcagagtcagcagacgctgagatccagaccttgagaatggaactttctgaaactctctccctggttgagaaattgaaaactgagctaagtgattgcaaagaatctgaagccagggccgtagaacttatagacagtactcgtatgcaactggagagggcaaatgcaaccatagaatcgctccaattggataggaccaaagggtcagagtactgcaactctttatcattggagttggagcagtctaaagatcgcattaaatcactggagagtcttgtgagcaaactacaggcagaagttgctattagtaacagcaatcaattggtaaactcttcgggcaatatttcaaaactttctcagggagatgaccaaactgaagaaacagtacagttaaaagaagagctgaattgtttgaaatatgaagcgagtcaattgaggtctgcattagaagcggctgagatgaggtaccaagaagaatatattcagagcacgctgcagattagaagtgcatatgatgaagttgaatctacaaaatctgaatcatgtcagagggaagctgaattggcatcagaactgaagcaagcaagggctcatgttgaagacttgagcactcagctgatggataaagaaagtcaattgcagagtatatcggaggaaaatgacaggttgagcttgcaaattgagaaaaatctatcaagtgaaggggaatctgaacttgcaacggagctgaagaagtcggaaaccgctgtggtagagttgaaggccagtttgatggataaggagacagaattgcagaacatcgttgaggaaaatgaaatgctgaagattgaacttaaaaacaaggaaatggagaggaacaatgtcaatgacgacgctgttgtttcagctgaagcaacaggggaggcagagcgagaggctgtaataaaggttggccatttaactgaagaagctgataaaagtacacagagagcagcacgagcgactgagcagctggatgcagcacaggctgcaaattctgaattggaggctgagttaaggaggttaaaggtgcagtcagatcagtggaggaaggccgctgaggcggctgctgctattctttcaacaggaaacaacgggaagtttgtggagagaacaggttcccttgaaagccactacaatcccttgagttcaccttattcagaagacttggacgatgactcgccaaagaagaaaaatgtgaccatgttgaagaagattggtgttctatggaagaagggccaaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009507 GO:0009536 GO:0009664 GO:0009987 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

No domains found.

Protein Analysis

616

Amino Acids

68.77

Weight (kDa)

4.98

Isoelectric Point (pI)

60.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37080 AT2G37080 AT2G37080 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350
fragaria_vesca	FvH4_6g15372 FvH4_6g15372 FvH4_6g15372 FvH4_6g15372
malus_domestica	MD04G1104300.v1.1 MD12G1124200.v1.1
prunus_persica	Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1
pyrus_communis	pycom04g09910 pycom12g12260
rosa_chinensis	RchiOBHm_Chr2g0099711 RchiOBHm_Chr2g0125251 RchiOBHm_Chr3g0468851
rosa_laevigata	RLG00000024406
rosa_multiflora	Rmu_sc0001639.1_g000019
rosa_roxburghii	Rroxscaffold_4G00315970 Rroxscaffold_6G00412520
rosa_rugosa	Rorug03G0096800 Rorug03G0096900 Rorug06G0151400
rosa_samantha	Rh2BG246400 Rh2CG237000 Rh3AG146600 Rh3AG146700 Rh3BG169100 Rh3BG169200 Rh3DG205900 Rh4AG101700 Rh4CG109700 Rh4DG262400 Rh7BG297800 Rh7DG377800
rosa_wichuraiana	Rw2G026840 Rw3G013790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	787
Acc36I	ACCTGC	1 cut(s)	153
Acc65I	GGTACC	1 cut(s)	1050
AccB1I	GGYRCC	1 cut(s)	1050
AciI	CCGC	5 cut(s)	560, 1037, 1329, 1659, 1667
AclWI	GGATC	4 cut(s)	94, 255, 444, 604
AcoI	YGGCCR	1 cut(s)	1516
AcsI	RAATTY	3 cut(s)	384, 525, 1597
AfaI	GTAC	5 cut(s)	724, 797, 972, 1052, 1546
AfiI	CCNNNNNNNGG	3 cut(s)	310, 579, 582
AjnI	CCWGG	2 cut(s)	648, 698
Alw21I	GWGCWC	3 cut(s)	420, 1076, 1196
Alw26I	GTCTC	1 cut(s)	1361
AlwI	GGATC	4 cut(s)	94, 255, 444, 604
AlwNI	CAGNNNCTG	2 cut(s)	376, 605
AoxI	GGCC	5 cut(s)	702, 1347, 1516, 1656, 1840
ApeKI	GCWGC	9 cut(s)	196, 481, 1078, 1556, 1573, 1583, 1592, 1670, 1673
ApoI	RAATTY	3 cut(s)	384, 525, 1597
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
Asp700I	GAANNNNTTC	2 cut(s)	1065, 1720
Asp718I	GGTACC	1 cut(s)	1050
AspS9I	GGNCC	5 cut(s)	129, 265, 702, 780, 1840
AsuHPI	GGTGA	1 cut(s)	1746
AvaII	GGWCC	3 cut(s)	129, 265, 780
BalI	TGGCCA	1 cut(s)	1518
BanI	GGYRCC	1 cut(s)	1050
BanII	GRGCYC	2 cut(s)	420, 1177
BarI	GAAGNNNNNNTAC	2 cut(s)	954, 986
BauI	CACGAG	1 cut(s)	1560
BbsI	GAAGAC	2 cut(s)	1191, 1773
Bbv12I	GWGCWC	3 cut(s)	420, 1076, 1196
BbvCI	CCTCAGC	1 cut(s)	1662
BbvI	GCAGC	9 cut(s)	183, 493, 1065, 1568, 1579, 1585, 1595, 1657, 1660
BccI	CCATC	4 cut(s)	484, 524, 1198, 1351
BceAI	ACGGC	1 cut(s)	689
BciT130I	CCWGG	2 cut(s)	650, 700
BciVI	GTATCC	2 cut(s)	115, 193
BcoDI	GTCTC	1 cut(s)	1361
BfaI	CTAG	1 cut(s)	126
BfmI	CTRYAG	3 cut(s)	377, 872, 1079
BfuAI	ACCTGC	1 cut(s)	153
BfuI	GTATCC	2 cut(s)	115, 193
BglI	GCCNNNNNGGC	1 cut(s)	1664
BmcAI	AGTACT	2 cut(s)	724, 797
Bme1390I	CCNGG	2 cut(s)	650, 700
Bme18I	GGWCC	3 cut(s)	129, 265, 780
BmgT120I	GGNCC	5 cut(s)	129, 265, 702, 780, 1840
BmiI	GGNNCC	3 cut(s)	131, 1052, 1723
BmrFI	CCNGG	2 cut(s)	650, 700
BmsI	GCATC	4 cut(s)	290, 391, 1160, 1570
BpiI	GAAGAC	2 cut(s)	1191, 1773
BpmI	CTGGAG	3 cut(s)	39, 758, 872
Bpu10I	CCTNAGC	1 cut(s)	1662
BpuEI	CTTGAG	3 cut(s)	640, 1210, 1768
BsaJI	CCNNGG	3 cut(s)	504, 648, 699
BsaXI	ACNNNNNCTCC	2 cut(s)	1601, 1631
Bsc4I	CCNNNNNNNGG	3 cut(s)	310, 579, 582
Bse1I	ACTGG	5 cut(s)	179, 268, 741, 855, 1350
Bse3DI	GCAATG	1 cut(s)	348
BseBI	CCWGG	2 cut(s)	650, 700
BseDI	CCNNGG	3 cut(s)	504, 648, 699
BseGI	GGATG	1 cut(s)	1585
BseLI	CCNNNNNNNGG	3 cut(s)	310, 579, 582
BseMI	GCAATG	1 cut(s)	348
BseNI	ACTGG	5 cut(s)	179, 268, 741, 855, 1350
BseRI	GAGGAG	1 cut(s)	595
BseXI	GCAGC	9 cut(s)	183, 493, 1065, 1568, 1579, 1585, 1595, 1657, 1660
BsgI	GTGCAG	1 cut(s)	1655
BshFI	GGCC	5 cut(s)	704, 1349, 1518, 1658, 1842
BshNI	GGYRCC	1 cut(s)	1050
BsiHKAI	GWGCWC	3 cut(s)	420, 1076, 1196
BslI	CCNNNNNNNGG	3 cut(s)	310, 579, 582
BsmAI	GTCTC	1 cut(s)	1361
BsnI	GGCC	5 cut(s)	704, 1349, 1518, 1658, 1842
Bsp1286I	GDGCHC	4 cut(s)	420, 1076, 1177, 1196
Bsp143I	GATC	6 cut(s)	86, 247, 436, 609, 835, 1642
BspACI	CCGC	5 cut(s)	560, 1037, 1329, 1659, 1667
BspANI	GGCC	5 cut(s)	704, 1349, 1518, 1658, 1842
BspLI	GGNNCC	3 cut(s)	131, 1052, 1723
BspMAI	CTGCAG	2 cut(s)	381, 1083
BspMI	ACCTGC	1 cut(s)	153
BspPI	GGATC	4 cut(s)	94, 255, 444, 604
BspQI	GCTCTTC	1 cut(s)	978
BspT107I	GGYRCC	1 cut(s)	1050
BsrDI	GCAATG	1 cut(s)	348
BsrI	ACTGG	5 cut(s)	179, 268, 741, 855, 1350
BssECI	CCNNGG	3 cut(s)	504, 648, 699
BssMI	GATC	6 cut(s)	86, 247, 436, 609, 835, 1642
BssSI	CACGAG	1 cut(s)	1560
BssT1I	CCWWGG	1 cut(s)	504
Bst2BI	CACGAG	1 cut(s)	1560
Bst2UI	CCWGG	2 cut(s)	650, 700
Bst4CI	ACNGT	3 cut(s)	722, 970, 975
Bst6I	CTCTTC	5 cut(s)	248, 287, 354, 922, 978
BstAPI	GCANNNNNTGC	3 cut(s)	347, 884, 1592
BstC8I	GCNNGC	4 cut(s)	588, 1076, 1167, 1259
BstF5I	GGATG	1 cut(s)	1585
BstKTI	GATC	6 cut(s)	89, 250, 439, 612, 838, 1645
BstMAI	GTCTC	1 cut(s)	1361
BstMBI	GATC	6 cut(s)	86, 247, 436, 609, 835, 1642
BstNI	CCWGG	2 cut(s)	650, 700
BstNSI	RCATGY	1 cut(s)	590
BstSCI	CCNGG	2 cut(s)	648, 698
BstSFI	CTRYAG	3 cut(s)	377, 872, 1079
BstV1I	GCAGC	9 cut(s)	183, 493, 1065, 1568, 1579, 1585, 1595, 1657, 1660
BstV2I	GAAGAC	2 cut(s)	1191, 1773
BstX2I	RGATCY	2 cut(s)	247, 609
BstXI	CCANNNNNNTGG	2 cut(s)	505, 1357
BstYI	RGATCY	2 cut(s)	247, 609
BsuI	GTATCC	2 cut(s)	115, 193
BsuRI	GGCC	5 cut(s)	704, 1349, 1518, 1658, 1842
BtgZI	GCGATG	1 cut(s)	313
BtsCI	GGATG	1 cut(s)	1585
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	4 cut(s)	153, 498, 848, 1652
BveI	ACCTGC	1 cut(s)	153
Cac8I	GCNNGC	4 cut(s)	588, 1076, 1167, 1259
CaiI	CAGNNNCTG	2 cut(s)	376, 605
Cfr13I	GGNCC	5 cut(s)	129, 265, 702, 780, 1840
CseI	GACGC	2 cut(s)	611, 1466
Csp6I	GTAC	5 cut(s)	723, 796, 971, 1051, 1545
CviAII	CATG	5 cut(s)	450, 587, 1128, 1178, 1807
CviQI	GTAC	5 cut(s)	723, 796, 971, 1051, 1545
DpnI	GATC	6 cut(s)	88, 249, 438, 611, 837, 1644
DpnII	GATC	6 cut(s)	86, 247, 436, 609, 835, 1642
DrdI	GACNNNNNNGTC	1 cut(s)	787
DseDI	GACNNNNNNGTC	1 cut(s)	787
EaeI	YGGCCR	1 cut(s)	1516
Eam1104I	CTCTTC	5 cut(s)	248, 287, 354, 922, 978
EarI	CTCTTC	5 cut(s)	248, 287, 354, 922, 978
EciI	GGCGGA	1 cut(s)	575
Ecl136II	GAGCTC	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	504
Eco24I	GRGCYC	2 cut(s)	420, 1177
Eco47I	GGWCC	3 cut(s)	129, 265, 780
Eco53kI	GAGCTC	1 cut(s)	418
EcoICRI	GAGCTC	1 cut(s)	418
EcoO109I	RGGNCCY	1 cut(s)	129
EcoRII	CCWGG	2 cut(s)	648, 698
EcoT14I	CCWWGG	1 cut(s)	504
EcoT38I	GRGCYC	2 cut(s)	420, 1177
ErhI	CCWWGG	1 cut(s)	504
FaeI	CATG	5 cut(s)	453, 590, 1131, 1181, 1810
FalI	AAGNNNNNCTT	2 cut(s)	13, 45
FatI	CATG	5 cut(s)	449, 586, 1127, 1177, 1806
FauNDI	CATATG	1 cut(s)	1096
FokI	GGATG	1 cut(s)	1592
FriOI	GRGCYC	2 cut(s)	420, 1177
FspBI	CTAG	1 cut(s)	126
GsuI	CTGGAG	3 cut(s)	39, 758, 872
HaeIII	GGCC	5 cut(s)	704, 1349, 1518, 1658, 1842
HgaI	GACGC	2 cut(s)	611, 1466
Hin1II	CATG	5 cut(s)	453, 590, 1131, 1181, 1810
HincII	GTYRAC	1 cut(s)	425
HindII	GTYRAC	1 cut(s)	425
HindIII	AAGCTT	1 cut(s)	353
HphI	GGTGA	1 cut(s)	1746
Hpy166II	GTNNAC	4 cut(s)	425, 913, 1547, 1754
Hpy188III	TCNNGA	6 cut(s)	84, 95, 413, 434, 440, 613
Hpy8I	GTNNAC	4 cut(s)	425, 913, 1547, 1754
Hpy99I	CGWCG	1 cut(s)	1460
HpyAV	CCTTC	5 cut(s)	301, 1280, 1339, 1648, 1831
HpyCH4III	ACNGT	3 cut(s)	722, 970, 975
Hsp92II	CATG	5 cut(s)	453, 590, 1131, 1181, 1810
KpnI	GGTACC	1 cut(s)	1054
Kzo9I	GATC	6 cut(s)	86, 247, 436, 609, 835, 1642
LguI	GCTCTTC	1 cut(s)	978
LmnI	GCTCC	4 cut(s)	423, 771, 823, 1309
Lsp1109I	GCAGC	9 cut(s)	183, 493, 1065, 1568, 1579, 1585, 1595, 1657, 1660
LweI	GCATC	4 cut(s)	290, 391, 1160, 1570
MaeI	CTAG	1 cut(s)	126
MaeIII	GTNAC	3 cut(s)	151, 893, 1801
MalI	GATC	6 cut(s)	88, 249, 438, 611, 837, 1644
MboI	GATC	6 cut(s)	86, 247, 436, 609, 835, 1642
MfeI	CAATTG	4 cut(s)	770, 905, 1016, 1220
MflI	RGATCY	2 cut(s)	247, 609
MhlI	GDGCHC	4 cut(s)	420, 1076, 1177, 1196
MlsI	TGGCCA	1 cut(s)	1518
MluNI	TGGCCA	1 cut(s)	1518
MlyI	GAGTC	7 cut(s)	293, 371, 557, 602, 865, 1021, 1775
MmeI	TCCRAC	2 cut(s)	801, 1302
Mox20I	TGGCCA	1 cut(s)	1518
MroXI	GAANNNNTTC	2 cut(s)	1065, 1720
MscI	TGGCCA	1 cut(s)	1518
MseI	TTAA	7 cut(s)	272, 843, 977, 1419, 1523, 1619, 1628
Msp20I	TGGCCA	1 cut(s)	1518
MspA1I	CMGCKG	5 cut(s)	1201, 1331, 1472, 1576, 1661
MspR9I	CCNGG	2 cut(s)	650, 700
MunI	CAATTG	4 cut(s)	770, 905, 1016, 1220
MvaI	CCWGG	2 cut(s)	650, 700
NdeI	CATATG	1 cut(s)	1096
NdeII	GATC	6 cut(s)	86, 247, 436, 609, 835, 1642
NlaIII	CATG	5 cut(s)	453, 590, 1131, 1181, 1810
NlaIV	GGNNCC	3 cut(s)	131, 1052, 1723
NmuCI	GTSAC	2 cut(s)	151, 1801
NspI	RCATGY	1 cut(s)	590
PaeI	GCATGC	1 cut(s)	590
PciSI	GCTCTTC	1 cut(s)	978
PdmI	GAANNNNTTC	2 cut(s)	1065, 1720
PfeI	GAWTC	9 cut(s)	98, 221, 455, 494, 689, 761, 1109, 1124, 1292
PleI	GAGTC	7 cut(s)	292, 370, 557, 601, 864, 1020, 1775
PpsI	GAGTC	7 cut(s)	292, 370, 557, 601, 864, 1020, 1775
PpuMI	RGGWCCY	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	420
Psp5II	RGGWCCY	1 cut(s)	129
Psp6I	CCWGG	2 cut(s)	648, 698
PspGI	CCWGG	2 cut(s)	648, 698
PspN4I	GGNNCC	3 cut(s)	131, 1052, 1723
PspPI	GGNCC	5 cut(s)	129, 265, 702, 780, 1840
PspPPI	RGGWCCY	1 cut(s)	129
PstI	CTGCAG	2 cut(s)	381, 1083
PstNI	CAGNNNCTG	2 cut(s)	376, 605
PsuI	RGATCY	2 cut(s)	247, 609
PvuII	CAGCTG	3 cut(s)	1201, 1472, 1576
RsaI	GTAC	5 cut(s)	724, 797, 972, 1052, 1546
RsaNI	GTAC	5 cut(s)	723, 796, 971, 1051, 1545
SacI	GAGCTC	1 cut(s)	420
SapI	GCTCTTC	1 cut(s)	978
SaqAI	TTAA	7 cut(s)	272, 843, 977, 1419, 1523, 1619, 1628
Sau3AI	GATC	6 cut(s)	86, 247, 436, 609, 835, 1642
Sau96I	GGNCC	5 cut(s)	129, 265, 702, 780, 1840
ScaI	AGTACT	2 cut(s)	724, 797
SchI	GAGTC	7 cut(s)	293, 371, 557, 602, 865, 1021, 1775
ScrFI	CCNGG	2 cut(s)	650, 700
SduI	GDGCHC	4 cut(s)	420, 1076, 1177, 1196
SfaNI	GCATC	4 cut(s)	290, 391, 1160, 1570
SfcI	CTRYAG	3 cut(s)	377, 872, 1079
SinI	GGWCC	3 cut(s)	129, 265, 780
SmlI	CTYRAG	3 cut(s)	619, 1189, 1747
SmoI	CTYRAG	3 cut(s)	619, 1189, 1747
SphI	GCATGC	1 cut(s)	590
SsiI	CCGC	5 cut(s)	560, 1037, 1329, 1659, 1667
SspI	AATATT	1 cut(s)	928
SspMI	CTAG	1 cut(s)	126
SstI	GAGCTC	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	648, 698
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	3 cut(s)	722, 970, 975
TaqI	TCGA	2 cut(s)	439, 488
TatI	WGTACW	4 cut(s)	722, 795, 970, 1544
TauI	GCSGC	3 cut(s)	1040, 1661, 1670
TfiI	GAWTC	9 cut(s)	98, 221, 455, 494, 689, 761, 1109, 1124, 1292
Tru1I	TTAA	7 cut(s)	272, 843, 977, 1419, 1523, 1619, 1628
Tru9I	TTAA	7 cut(s)	272, 843, 977, 1419, 1523, 1619, 1628
TscAI	CASTG	4 cut(s)	160, 505, 855, 1652
TseFI	GTSAC	2 cut(s)	151, 1801
TseI	GCWGC	9 cut(s)	196, 481, 1078, 1556, 1573, 1583, 1592, 1670, 1673
Tsp45I	GTSAC	2 cut(s)	151, 1801
TspDTI	ATGAA	4 cut(s)	537, 1020, 1116, 1413
TspGWI	ACGGA	2 cut(s)	410, 1322
TspRI	CASTG	4 cut(s)	160, 505, 855, 1652
VpaK11BI	GGWCC	3 cut(s)	129, 265, 780
XapI	RAATTY	3 cut(s)	384, 525, 1597
XceI	RCATGY	1 cut(s)	590
XmnI	GAANNNNTTC	2 cut(s)	1065, 1720
XspI	CTAG	1 cut(s)	126
ZrmI	AGTACT	2 cut(s)	724, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.