Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001479

Physical Location & Seq

Genomic Coordinates Forward (+)

20604253 .. 20604576

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG109700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTTTTTCAAATTGGAGACCAAGTTAAGGAGATTAAAGGTGCAGTCAGCTATGTGGAGGAAGATCGCTGAGGCAGCCGCTGCTATTCTTTCAACAAGAAACAACGGGAAGTTTGTGAACAGAACAAGTTCTCTTGATAGCCACTACAATCCCTTGAGTTCACCTTATTCAGAAGACTTGGACGATGACTCGCCAAAGACATGTTCAAGAAGATTGGTCTGTTATGGAAGAAGGGCCAAAAGTATATGGAATTATGCCACAAGTTTCTTATCATTGTCTGGTATTGTTATGATGGGTTCTGTATGTTCTTTTGTTCCAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009507 GO:0009536 GO:0009664 GO:0009987 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

12.03

Weight (kDa)

9.81

Isoelectric Point (pI)

54.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37080 AT2G37080 AT2G37080 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350
fragaria_vesca	FvH4_6g15372 FvH4_6g15372 FvH4_6g15372 FvH4_6g15372
malus_domestica	MD04G1104300.v1.1 MD12G1124200.v1.1
prunus_persica	Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1
pyrus_communis	pycom04g09910 pycom12g12260
rosa_chinensis	RchiOBHm_Chr2g0099711 RchiOBHm_Chr2g0125251 RchiOBHm_Chr3g0468851
rosa_laevigata	RLG00000024406
rosa_multiflora	Rmu_sc0001639.1_g000019
rosa_roxburghii	Rroxscaffold_4G00315970 Rroxscaffold_6G00412520
rosa_rugosa	Rorug03G0096800 Rorug03G0096900 Rorug06G0151400
rosa_samantha	Rh2BG246400 Rh2CG237000 Rh3AG146600 Rh3AG146700 Rh3BG169100 Rh3BG169200 Rh3DG205900 Rh4AG101700 Rh4CG109700 Rh4DG262400 Rh7BG297800 Rh7DG377800
rosa_wichuraiana	Rw2G026840 Rw3G013790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	27
AflIII	ACRYGT	1 cut(s)	200
AgsI	TTSAA	3 cut(s)	10, 93, 207
AjnI	CCWGG	1 cut(s)	316
AjuI	GAANNNNNNNTTGG	2 cut(s)	187, 219
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
Alw26I	GTCTC	1 cut(s)	11
AlwNI	CAGNNNCTG	1 cut(s)	80
AoxI	GGCC	1 cut(s)	234
ApeKI	GCWGC	2 cut(s)	74, 80
Asp700I	GAANNNNTTC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	234
AsuHPI	GGTGA	1 cut(s)	153
BbsI	GAAGAC	1 cut(s)	180
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	67, 86
BccI	CCATC	1 cut(s)	286
BciT130I	CCWGG	1 cut(s)	318
BcoDI	GTCTC	1 cut(s)	11
BisI	GCNGC	3 cut(s)	75, 78, 81
BlsI	GCNGC	3 cut(s)	76, 79, 82
Bme1390I	CCNGG	1 cut(s)	318
BmgT120I	GGNCC	1 cut(s)	234
BmrFI	CCNGG	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	180
Bpu10I	CCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	175
BsaI	GGTCTC	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	318
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	67, 86
BsgI	GTGCAG	1 cut(s)	62
BshFI	GGCC	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	11
BsnI	GGCC	1 cut(s)	236
Bso31I	GGTCTC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	63
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	1 cut(s)	236
BspCNI	CTCAG	1 cut(s)	61
BspTNI	GGTCTC	1 cut(s)	11
BssMI	GATC	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	318
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstDEI	CTNAG	1 cut(s)	69
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 80
BstNI	CCWGG	1 cut(s)	318
BstNSI	RCATGY	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	316
BstV1I	GCAGC	2 cut(s)	67, 86
BstV2I	GAAGAC	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	236
CaiI	CAGNNNCTG	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	234
CviAII	CATG	1 cut(s)	201
CviJI	RGCY	4 cut(s)	50, 77, 141, 236
CviKI_1	RGCY	4 cut(s)	50, 77, 141, 236
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	316
FaeI	CATG	1 cut(s)	204
FaiI	YATR	8 cut(s)	53, 202, 225, 245, 247, 255, 290, 304
FatI	CATG	1 cut(s)	200
Fnu4HI	GCNGC	3 cut(s)	75, 78, 81
Fsp4HI	GCNGC	3 cut(s)	75, 78, 81
GluI	GCNGC	3 cut(s)	75, 78, 81
HaeIII	GGCC	1 cut(s)	236
Hin1II	CATG	1 cut(s)	204
HinfI	GANTC	1 cut(s)	188
HphI	GGTGA	1 cut(s)	153
Hpy166II	GTNNAC	2 cut(s)	118, 161
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	2 cut(s)	134, 207
Hpy8I	GTNNAC	2 cut(s)	118, 161
HpyAV	CCTTC	1 cut(s)	225
HpyCH4V	TGCA	1 cut(s)	43
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 80
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	63
LpnPI	CCDG	2 cut(s)	264, 303
Lsp1109I	GCAGC	2 cut(s)	67, 86
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	4 cut(s)	73, 185, 222, 240
MluCI	AATT	2 cut(s)	11, 250
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	2 cut(s)	51, 64
MroXI	GAANNNNTTC	1 cut(s)	127
MseI	TTAA	2 cut(s)	26, 35
MspA1I	CMGCKG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	2 cut(s)	74, 80
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	1 cut(s)	204
NspI	RCATGY	1 cut(s)	204
PciI	ACATGT	1 cut(s)	200
PdmI	GAANNNNTTC	1 cut(s)	127
PfoI	TCCNGGA	1 cut(s)	316
PkrI	GCNGC	3 cut(s)	76, 79, 82
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
PscI	ACATGT	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspPI	GGNCC	1 cut(s)	234
PstNI	CAGNNNCTG	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	26, 35
SatI	GCNGC	3 cut(s)	75, 78, 81
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	234
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	318
SetI	ASST	3 cut(s)	42, 52, 166
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
Sse9I	AATT	2 cut(s)	11, 250
SsiI	CCGC	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	316
TasI	AATT	2 cut(s)	11, 250
TauI	GCSGC	1 cut(s)	80
Tru1I	TTAA	2 cut(s)	26, 35
Tru9I	TTAA	2 cut(s)	26, 35
TseI	GCWGC	2 cut(s)	74, 80
XceI	RCATGY	1 cut(s)	204
XmnI	GAANNNNTTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.