Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001479

Physical Location & Seq

Genomic Coordinates Forward (+)

14763742 .. 14765555

Gene Structure 1814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g12260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1686 bp

ATGTCACCAAGAAGCCCTGTACCTGAGAAGAAGCAACCGAAAAGAGTGTCAGAATTGGAAACACAACTTGCTCAACTCCAAGAGGATCTGAAGAAGACAAAGGACCAGTTAAACACAACTGAGTCACTGAAGAGACGATCCCAGCAGGAGGCTGAAGAAGCGAAGAACCAGATATTAGCCATGTCTGCAAAGCTTGAAGAATCCCAACAGCAACTGATGGAACTTTCTACTTCTGAAGATGCTCGTCTTCAAGAGCTTCGTGAACTGTCTCAGGATCGGGATAGAGCATGGGAGTCTGAACTTGAGGCTGTTCAAAAGCAGCGGTCAATGGATTCTGCTGCCCTGGCCTCTGCCATGAATGAAATTCAGAAGCTAAAGGGTCAGCTCGAAAGGGTAGCCGAGTCTGAGGACACTCAAAACAGGCATGCAGAGTTGGCATATGCTGAGATCCAGACCTTGAGAAAGGAACTTTCCGAAACTTTTTCCCTGGTTGAGAAATTGAAAGCTGAGCTCAATGAATGCAAAGAATCCGAATCCCGGGCAGTAGAAGTTATACAAAGCACTCATATGCAATTGGAAGCGGCAAATGCAACCATAGAAATGCTCAAATTGGATGGGATCAAAGCCACAGAGTCTTGCAACTCCTTATCGTTGGAGTTGGAGCAATCCAATGCTCGTGTTAAATCACTGGAGGGTCTTGTGAGCAAACTTCAAGCAGAACTGATTAATAGGAAAGGCAATCATTCGGTAAACTCTACAGACAATGTAAAACTTGTTAAGGAAGATGAAAATGAAGAAAGAAAACAGTTACAAGCAGAGCTGAATTCTTTGAAATCCGAAGTGGGTCAGTTGAGATCTGCATTGGATGCAGCTGAGGTCAGGTACCAGGAAGAATACATTCAGAGCACATTGCAGATTCGGAATGCGTACGAGGAAGTTGACAGTGCAAAATCTGAAGCATCCGAGAGGGAAGCTGAACTGACAGCAGAACTGAAAAAAGCGAAGGATCATATTGAAGACTTGAAAGCACAGCTAATGGATAAGGAAACTGAAATTCAGAGTGTATCAAAGAAAAATGATGGGGTGGCCTTGAAAGTTGAGAAAAATTTATCAACTGAAGACGAATCTGAACTTGAATTGGAGCTAAAGAAGTCAGAGACTGTAATGGTAGAGTTGAAGGCAAGTTTGTTGGATAAGGAAACAGAATTGCAGAACATAGCTGAGGAGAATGAAATGCTCAAGATGGAACTAAAAAACAAGGAAATCGAGAGGAATAAAGTTAATGATGAGGCTGTTTTTTCGGAGGAAGCTGCAAGGGCTGCAGAGGGAGTGGCTTTGGTGAAACTTGGCTATGCGACTGAGGAAGCAGATAAAAGTACCAGGAGAGCCGCACAGGTGACTGAGCAGCTGGATGCAGCACAGGCTGCAAATTCTGAACTGGAGGCTGAGTTAAGGAAGTTAAAGGTGCAGGCGGATCAGTGGAGGAAGGCCGCTGAGGCAGCTGCTGCCATGCTTTCAACTGGAAACAATGGGAACCTTGTTGAGAGAACAGGTTCTCTTGACAGCAACAACTACAATCCTATGAATTCACCTTATTCAGAAGACATGGATGATGACTCGCCGAAGAAGAAAAATGGGAATATGTTAAAGAAGATCGGCGTGTTATGGAAGAAAGGCCAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009507 GO:0009536 GO:0009664 GO:0009987 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

No domains found.

Protein Analysis

562

Amino Acids

63.11

Weight (kDa)

4.89

Isoelectric Point (pI)

55.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37080 AT2G37080 AT2G37080 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350
fragaria_vesca	FvH4_6g15372 FvH4_6g15372 FvH4_6g15372 FvH4_6g15372
malus_domestica	MD04G1104300.v1.1 MD12G1124200.v1.1
prunus_persica	Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1
pyrus_communis	pycom04g09910 pycom12g12260
rosa_chinensis	RchiOBHm_Chr2g0099711 RchiOBHm_Chr2g0125251 RchiOBHm_Chr3g0468851
rosa_laevigata	RLG00000024406
rosa_multiflora	Rmu_sc0001639.1_g000019
rosa_roxburghii	Rroxscaffold_4G00315970 Rroxscaffold_6G00412520
rosa_rugosa	Rorug03G0096800 Rorug03G0096900 Rorug06G0151400
rosa_samantha	Rh2BG246400 Rh2CG237000 Rh3AG146600 Rh3AG146700 Rh3BG169100 Rh3BG169200 Rh3DG205900 Rh4AG101700 Rh4CG109700 Rh4DG262400 Rh7BG297800 Rh7DG377800
rosa_wichuraiana	Rw2G026840 Rw3G013790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	882
AccB1I	GGYRCC	1 cut(s)	882
AciI	CCGC	5 cut(s)	322, 581, 1389, 1472, 1491
AclWI	GGATC	7 cut(s)	93, 132, 282, 442, 626, 1014, 1482
AcsI	RAATTY	6 cut(s)	363, 823, 1053, 1105, 1429, 1585
AcuI	CTGAAG	6 cut(s)	110, 149, 174, 255, 975, 1137
AfaI	GTAC	4 cut(s)	21, 884, 929, 1378
AfiI	CCNNNNNNNGG	2 cut(s)	148, 537
AjnI	CCWGG	4 cut(s)	342, 486, 885, 1379
Alw21I	GWGCWC	2 cut(s)	513, 908
Alw26I	GTCTC	3 cut(s)	127, 273, 1151
AlwI	GGATC	7 cut(s)	93, 132, 282, 442, 626, 1014, 1482
AlwNI	CAGNNNCTG	3 cut(s)	214, 1160, 1505
Ama87I	CYCGRG	1 cut(s)	537
AoxI	GGCC	4 cut(s)	345, 1086, 1488, 1675
ApoI	RAATTY	6 cut(s)	363, 823, 1053, 1105, 1429, 1585
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
AseI	ATTAAT	1 cut(s)	726
Asp700I	GAANNNNTTC	2 cut(s)	897, 1552
Asp718I	GGTACC	1 cut(s)	882
AspS9I	GGNCC	1 cut(s)	103
AsuC2I	CCSGG	2 cut(s)	538, 539
AsuHPI	GGTGA	3 cut(s)	1351, 1408, 1581
AvaI	CYCGRG	1 cut(s)	537
AvaII	GGWCC	1 cut(s)	103
BanI	GGYRCC	1 cut(s)	882
BanII	GRGCYC	1 cut(s)	513
BauI	CACGAG	1 cut(s)	675
BbsI	GAAGAC	5 cut(s)	101, 239, 1023, 1125, 1608
Bbv12I	GWGCWC	2 cut(s)	513, 908
BbvCI	CCTCAGC	3 cut(s)	873, 1221, 1494
BccI	CCATC	4 cut(s)	211, 608, 1073, 1237
BciT130I	CCWGG	4 cut(s)	344, 488, 887, 1381
BcnI	CCSGG	2 cut(s)	538, 539
BcoDI	GTCTC	3 cut(s)	127, 273, 1151
BfmI	CTRYAG	2 cut(s)	756, 1320
BglI	GCCNNNNNGGC	1 cut(s)	1496
BglII	AGATCT	1 cut(s)	854
BlpI	GCTNAGC	1 cut(s)	507
Bme1390I	CCNGG	6 cut(s)	344, 488, 538, 539, 887, 1381
Bme18I	GGWCC	1 cut(s)	103
BmeT110I	CYCGRG	1 cut(s)	537
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	2 cut(s)	884, 1535
BmrFI	CCNGG	6 cut(s)	344, 488, 538, 539, 887, 1381
BmsI	GCATC	4 cut(s)	229, 856, 968, 1402
BpiI	GAAGAC	5 cut(s)	101, 239, 1023, 1125, 1608
BpmI	CTGGAG	2 cut(s)	710, 1460
Bpu10I	CCTNAGC	3 cut(s)	873, 1221, 1494
Bpu1102I	GCTNAGC	1 cut(s)	507
BpuEI	CTTGAG	3 cut(s)	323, 478, 1223
BpuMI	CCSGG	2 cut(s)	538, 539
BsaJI	CCNNGG	3 cut(s)	342, 486, 537
BsaXI	ACNNNNNCTCC	2 cut(s)	1433, 1463
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 537
Bse1I	ACTGG	4 cut(s)	106, 693, 1443, 1525
Bse3DI	GCAATG	1 cut(s)	908
BseBI	CCWGG	4 cut(s)	344, 488, 887, 1381
BseDI	CCNNGG	3 cut(s)	342, 486, 537
BseGI	GGATG	5 cut(s)	619, 871, 959, 1417, 1615
BseLI	CCNNNNNNNGG	2 cut(s)	148, 537
BseMI	GCAATG	1 cut(s)	908
BseNI	ACTGG	4 cut(s)	106, 693, 1443, 1525
BseRI	GAGGAG	1 cut(s)	1238
BseYI	CCCAGC	1 cut(s)	141
BsgI	GTGCAG	1 cut(s)	1487
BshFI	GGCC	4 cut(s)	347, 1088, 1490, 1677
BshNI	GGYRCC	1 cut(s)	882
BsiHKAI	GWGCWC	2 cut(s)	513, 908
BsiHKCI	CYCGRG	1 cut(s)	537
BsiSI	CCGG	1 cut(s)	538
BsiWI	CGTACG	1 cut(s)	927
BslI	CCNNNNNNNGG	2 cut(s)	148, 537
BsmAI	GTCTC	3 cut(s)	127, 273, 1151
BsmBI	CGTCTC	1 cut(s)	127
BsmI	GAATGC	2 cut(s)	524, 928
BsnI	GGCC	4 cut(s)	347, 1088, 1490, 1677
BsoBI	CYCGRG	1 cut(s)	537
Bsp1286I	GDGCHC	2 cut(s)	513, 908
Bsp143I	GATC	9 cut(s)	85, 137, 274, 447, 618, 854, 1006, 1474, 1653
Bsp1720I	GCTNAGC	1 cut(s)	507
BspACI	CCGC	5 cut(s)	322, 581, 1389, 1472, 1491
BspANI	GGCC	4 cut(s)	347, 1088, 1490, 1677
BspLI	GGNNCC	2 cut(s)	884, 1535
BspMAI	CTGCAG	1 cut(s)	1324
BspPI	GGATC	7 cut(s)	93, 132, 282, 442, 626, 1014, 1482
BspT107I	GGYRCC	1 cut(s)	882
BsrDI	GCAATG	1 cut(s)	908
BsrI	ACTGG	4 cut(s)	106, 693, 1443, 1525
BssECI	CCNNGG	3 cut(s)	342, 486, 537
BssMI	GATC	9 cut(s)	85, 137, 274, 447, 618, 854, 1006, 1474, 1653
BssSI	CACGAG	1 cut(s)	675
Bst2BI	CACGAG	1 cut(s)	675
Bst2UI	CCWGG	4 cut(s)	344, 488, 887, 1381
Bst4CI	ACNGT	4 cut(s)	267, 807, 944, 1162
Bst6I	CTCTTC	1 cut(s)	125
BstAPI	GCANNNNNTGC	4 cut(s)	866, 1319, 1424, 1505
BstC8I	GCNNGC	2 cut(s)	426, 1470
BstF5I	GGATG	5 cut(s)	619, 871, 959, 1417, 1615
BstKTI	GATC	9 cut(s)	88, 140, 277, 450, 621, 857, 1009, 1477, 1656
BstMAI	GTCTC	3 cut(s)	127, 273, 1151
BstMBI	GATC	9 cut(s)	85, 137, 274, 447, 618, 854, 1006, 1474, 1653
BstNI	CCWGG	4 cut(s)	344, 488, 887, 1381
BstNSI	RCATGY	1 cut(s)	428
BstSCI	CCNGG	6 cut(s)	342, 486, 536, 537, 885, 1379
BstSFI	CTRYAG	2 cut(s)	756, 1320
BstV2I	GAAGAC	5 cut(s)	101, 239, 1023, 1125, 1608
BstX2I	RGATCY	3 cut(s)	85, 447, 854
BstYI	RGATCY	3 cut(s)	85, 447, 854
BsuRI	GGCC	4 cut(s)	347, 1088, 1490, 1677
BtsCI	GGATG	5 cut(s)	619, 871, 959, 1417, 1615
BtsIMutI	CAGTG	4 cut(s)	125, 686, 949, 1484
Cac8I	GCNNGC	2 cut(s)	426, 1470
CaiI	CAGNNNCTG	3 cut(s)	214, 1160, 1505
Cfr13I	GGNCC	1 cut(s)	103
Cfr9I	CCCGGG	1 cut(s)	537
Csp6I	GTAC	4 cut(s)	20, 883, 928, 1377
CviAII	CATG	6 cut(s)	181, 288, 355, 425, 1510, 1606
CviQI	GTAC	4 cut(s)	20, 883, 928, 1377
DpnI	GATC	9 cut(s)	87, 139, 276, 449, 620, 856, 1008, 1476, 1655
DpnII	GATC	9 cut(s)	85, 137, 274, 447, 618, 854, 1006, 1474, 1653
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
EciI	GGCGGA	1 cut(s)	1487
Ecl136II	GAGCTC	1 cut(s)	511
Eco24I	GRGCYC	1 cut(s)	513
Eco47I	GGWCC	1 cut(s)	103
Eco53kI	GAGCTC	1 cut(s)	511
Eco57I	CTGAAG	6 cut(s)	110, 149, 174, 255, 975, 1137
Eco88I	CYCGRG	1 cut(s)	537
EcoICRI	GAGCTC	1 cut(s)	511
EcoRI	GAATTC	2 cut(s)	823, 1585
EcoRII	CCWGG	4 cut(s)	342, 486, 885, 1379
EcoT38I	GRGCYC	1 cut(s)	513
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	6 cut(s)	184, 291, 358, 428, 1513, 1609
FatI	CATG	6 cut(s)	180, 287, 354, 424, 1509, 1605
FauNDI	CATATG	2 cut(s)	439, 567
FokI	GGATG	5 cut(s)	626, 878, 946, 1424, 1622
FriOI	GRGCYC	1 cut(s)	513
GsaI	CCCAGC	1 cut(s)	145
GsuI	CTGGAG	2 cut(s)	710, 1460
HaeIII	GGCC	4 cut(s)	347, 1088, 1490, 1677
HapII	CCGG	1 cut(s)	538
Hin1II	CATG	6 cut(s)	184, 291, 358, 428, 1513, 1609
HincII	GTYRAC	1 cut(s)	940
HindII	GTYRAC	1 cut(s)	940
HindIII	AAGCTT	1 cut(s)	191
HpaII	CCGG	1 cut(s)	538
HphI	GGTGA	3 cut(s)	1351, 1408, 1581
Hpy166II	GTNNAC	3 cut(s)	263, 751, 940
Hpy188III	TCNNGA	8 cut(s)	251, 260, 272, 278, 451, 1240, 1267, 1559
Hpy8I	GTNNAC	3 cut(s)	263, 751, 940
HpyAV	CCTTC	3 cut(s)	997, 1171, 1480
HpyCH4III	ACNGT	4 cut(s)	267, 807, 944, 1162
Hsp92II	CATG	6 cut(s)	184, 291, 358, 428, 1513, 1609
KpnI	GGTACC	1 cut(s)	886
Kzo9I	GATC	9 cut(s)	85, 137, 274, 447, 618, 854, 1006, 1474, 1653
LmnI	GCTCC	2 cut(s)	661, 1141
LweI	GCATC	4 cut(s)	229, 856, 968, 1402
MaeIII	GTNAC	4 cut(s)	3, 123, 807, 1396
MalI	GATC	9 cut(s)	87, 139, 276, 449, 620, 856, 1008, 1476, 1655
MboI	GATC	9 cut(s)	85, 137, 274, 447, 618, 854, 1006, 1474, 1653
MfeI	CAATTG	1 cut(s)	572
MflI	RGATCY	3 cut(s)	85, 447, 854
MhlI	GDGCHC	2 cut(s)	513, 908
MlyI	GAGTC	5 cut(s)	131, 302, 410, 641, 1610
MmeI	TCCRAC	3 cut(s)	633, 639, 1170
MroXI	GAANNNNTTC	2 cut(s)	897, 1552
MseI	TTAA	8 cut(s)	110, 681, 726, 777, 1281, 1451, 1460, 1646
MslI	CAYNNNNRTG	2 cut(s)	566, 599
MspA1I	CMGCKG	5 cut(s)	322, 872, 1408, 1493, 1502
MspI	CCGG	1 cut(s)	538
MspR9I	CCNGG	6 cut(s)	344, 488, 538, 539, 887, 1381
MunI	CAATTG	1 cut(s)	572
Mva1269I	GAATGC	2 cut(s)	524, 928
MvaI	CCWGG	4 cut(s)	344, 488, 887, 1381
NciI	CCSGG	2 cut(s)	538, 539
NdeI	CATATG	2 cut(s)	439, 567
NdeII	GATC	9 cut(s)	85, 137, 274, 447, 618, 854, 1006, 1474, 1653
NlaIII	CATG	6 cut(s)	184, 291, 358, 428, 1513, 1609
NlaIV	GGNNCC	2 cut(s)	884, 1535
NmeAIII	GCCGAG	1 cut(s)	424
NmuCI	GTSAC	3 cut(s)	3, 123, 1396
NspI	RCATGY	1 cut(s)	428
PaeI	GCATGC	1 cut(s)	428
PctI	GAATGC	2 cut(s)	524, 928
PdmI	GAANNNNTTC	2 cut(s)	897, 1552
PfeI	GAWTC	6 cut(s)	200, 332, 527, 533, 916, 1124
Pfl23II	CGTACG	1 cut(s)	927
PleI	GAGTC	5 cut(s)	130, 301, 409, 640, 1610
PpsI	GAGTC	5 cut(s)	130, 301, 409, 640, 1610
PshBI	ATTAAT	1 cut(s)	726
Psp124BI	GAGCTC	1 cut(s)	513
Psp6I	CCWGG	4 cut(s)	342, 486, 885, 1379
PspFI	CCCAGC	1 cut(s)	141
PspGI	CCWGG	4 cut(s)	342, 486, 885, 1379
PspLI	CGTACG	1 cut(s)	927
PspN4I	GGNNCC	2 cut(s)	884, 1535
PspPI	GGNCC	1 cut(s)	103
PstI	CTGCAG	1 cut(s)	1324
PstNI	CAGNNNCTG	3 cut(s)	214, 1160, 1505
PsuI	RGATCY	3 cut(s)	85, 447, 854
PvuII	CAGCTG	3 cut(s)	872, 1408, 1502
RsaI	GTAC	4 cut(s)	21, 884, 929, 1378
RsaNI	GTAC	4 cut(s)	20, 883, 928, 1377
RseI	CAYNNNNRTG	2 cut(s)	566, 599
SacI	GAGCTC	1 cut(s)	513
SaqAI	TTAA	8 cut(s)	110, 681, 726, 777, 1281, 1451, 1460, 1646
Sau3AI	GATC	9 cut(s)	85, 137, 274, 447, 618, 854, 1006, 1474, 1653
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	5 cut(s)	131, 302, 410, 641, 1610
ScrFI	CCNGG	6 cut(s)	344, 488, 538, 539, 887, 1381
SduI	GDGCHC	2 cut(s)	513, 908
SfaNI	GCATC	4 cut(s)	229, 856, 968, 1402
SfcI	CTRYAG	2 cut(s)	756, 1320
SinI	GGWCC	1 cut(s)	103
SmaI	CCCGGG	1 cut(s)	539
SmiMI	CAYNNNNRTG	2 cut(s)	566, 599
SmlI	CTYRAG	3 cut(s)	302, 457, 1238
SmoI	CTYRAG	3 cut(s)	302, 457, 1238
SphI	GCATGC	1 cut(s)	428
SsiI	CCGC	5 cut(s)	322, 581, 1389, 1472, 1491
SstI	GAGCTC	1 cut(s)	513
StyD4I	CCNGG	6 cut(s)	342, 486, 536, 537, 885, 1379
TaaI	ACNGT	4 cut(s)	267, 807, 944, 1162
TaqI	TCGA	2 cut(s)	387, 1266
TauI	GCSGC	3 cut(s)	584, 1391, 1493
TfiI	GAWTC	6 cut(s)	200, 332, 527, 533, 916, 1124
Tru1I	TTAA	8 cut(s)	110, 681, 726, 777, 1281, 1451, 1460, 1646
Tru9I	TTAA	8 cut(s)	110, 681, 726, 777, 1281, 1451, 1460, 1646
TscAI	CASTG	4 cut(s)	132, 693, 949, 1484
TseFI	GTSAC	3 cut(s)	3, 123, 1396
Tsp45I	GTSAC	3 cut(s)	3, 123, 1396
TspDTI	ATGAA	7 cut(s)	371, 375, 531, 801, 807, 1245, 1598
TspMI	CCCGGG	1 cut(s)	537
TspRI	CASTG	4 cut(s)	132, 693, 949, 1484
VpaK11BI	GGWCC	1 cut(s)	103
VspI	ATTAAT	1 cut(s)	726
XapI	RAATTY	6 cut(s)	363, 823, 1053, 1105, 1429, 1585
XceI	RCATGY	1 cut(s)	428
XmaI	CCCGGG	1 cut(s)	537
XmnI	GAANNNNTTC	2 cut(s)	897, 1552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.