Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001479

Physical Location & Seq

Genomic Coordinates Forward (+)

21655824 .. 21658171

Gene Structure 2348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG101700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGAGCCATGGCTTCCTTATGTACCTGTTAAGAACAACCCTGAGGATGCTGCTAAGCCAATGTTTTTCAAATTGGAGACCAAGTTAAGGAGATTAAAGGTGCAGTCAGCTATGTGGAGGAAGATCGCTGAGGCAGCCGCTGCTATTCTTTCAACAAGAAACAACGGGAAGTTTGTGAACAGAACAAGTTCTCTTGATAGCCACTACAATCCCTTGAGTTCACCTTATTCAGAAGACTTGGACGATGACTCGCCAAAGACATGTTCAAGAAGATTGGTCTGTTATGGAAGAAGGGCCAAAAGTATATGGAATTATGCCACAAGTTTCTTATCATTGTCTGGTATTGTTATGATGGGTTCTGTGGAAATCACAGCAGCAAGCATGAAGCAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009507 GO:0009536 GO:0009664 GO:0009987 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.77

Weight (kDa)

9.61

Isoelectric Point (pI)

59.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37080 AT2G37080 AT2G37080 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350
fragaria_vesca	FvH4_6g15372 FvH4_6g15372 FvH4_6g15372 FvH4_6g15372
malus_domestica	MD04G1104300.v1.1 MD12G1124200.v1.1
prunus_persica	Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1
pyrus_communis	pycom04g09910 pycom12g12260
rosa_chinensis	RchiOBHm_Chr2g0099711 RchiOBHm_Chr2g0125251 RchiOBHm_Chr3g0468851
rosa_laevigata	RLG00000024406
rosa_multiflora	Rmu_sc0001639.1_g000019
rosa_roxburghii	Rroxscaffold_4G00315970 Rroxscaffold_6G00412520
rosa_rugosa	Rorug03G0096800 Rorug03G0096900 Rorug06G0151400
rosa_samantha	Rh2BG246400 Rh2CG237000 Rh3AG146600 Rh3AG146700 Rh3BG169100 Rh3BG169200 Rh3DG205900 Rh4AG101700 Rh4CG109700 Rh4DG262400 Rh7BG297800 Rh7DG377800
rosa_wichuraiana	Rw2G026840 Rw3G013790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	138
AfaI	GTAC	1 cut(s)	24
AfiI	CCNNNNNNNGG	1 cut(s)	87
AflIII	ACRYGT	1 cut(s)	260
AgsI	TTSAA	3 cut(s)	70, 153, 267
AjuI	GAANNNNNNNTTGG	2 cut(s)	247, 279
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
Alw26I	GTCTC	1 cut(s)	71
AlwNI	CAGNNNCTG	1 cut(s)	140
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	4 cut(s)	50, 134, 140, 374
Asp700I	GAANNNNTTC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	294
AsuHPI	GGTGA	1 cut(s)	213
AxyI	CCTNAGG	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	240
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	4 cut(s)	37, 127, 146, 386
BccI	CCATC	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	71
BisI	GCNGC	5 cut(s)	51, 135, 138, 141, 375
BlpI	GCTNAGC	1 cut(s)	54
BlsI	GCNGC	5 cut(s)	52, 136, 139, 142, 376
BmgT120I	GGNCC	1 cut(s)	294
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	37
BpiI	GAAGAC	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	129
Bpu1102I	GCTNAGC	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	235
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse21I	CCTNAGG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMII	CTCAG	2 cut(s)	33, 120
BseXI	GCAGC	4 cut(s)	37, 127, 146, 386
BsgI	GTGCAG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	296
Bso31I	GGTCTC	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	123
Bsp1720I	GCTNAGC	1 cut(s)	54
Bsp19I	CCATGG	1 cut(s)	8
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	2 cut(s)	34, 121
BspLI	GGNNCC	1 cut(s)	6
BspTNI	GGTCTC	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	8
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstC8I	GCNNGC	1 cut(s)	379
BstDEI	CTNAG	3 cut(s)	42, 54, 129
BstDSI	CCRYGG	1 cut(s)	8
BstF5I	GGATG	1 cut(s)	52
BstKTI	GATC	1 cut(s)	126
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 140
BstNSI	RCATGY	1 cut(s)	264
BstV1I	GCAGC	4 cut(s)	37, 127, 146, 386
BstV2I	GAAGAC	1 cut(s)	240
Bsu36I	CCTNAGG	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	296
BtgI	CCRYGG	1 cut(s)	8
BtsCI	GGATG	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	379
CaiI	CAGNNNCTG	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	294
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	3 cut(s)	9, 261, 382
CviJI	RGCY	7 cut(s)	7, 13, 58, 110, 137, 201, 296
CviKI_1	RGCY	7 cut(s)	7, 13, 58, 110, 137, 201, 296
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	3 cut(s)	42, 54, 129
DpnI	GATC	1 cut(s)	125
DpnII	GATC	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	71
Eco81I	CCTNAGG	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	8
FaeI	CATG	3 cut(s)	12, 264, 385
FatI	CATG	3 cut(s)	8, 260, 381
Fnu4HI	GCNGC	5 cut(s)	51, 135, 138, 141, 375
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	5 cut(s)	51, 135, 138, 141, 375
GluI	GCNGC	5 cut(s)	51, 135, 138, 141, 375
HaeIII	GGCC	1 cut(s)	296
Hin1II	CATG	3 cut(s)	12, 264, 385
HinfI	GANTC	1 cut(s)	248
HphI	GGTGA	1 cut(s)	213
Hpy166II	GTNNAC	2 cut(s)	178, 221
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	2 cut(s)	194, 267
Hpy8I	GTNNAC	2 cut(s)	178, 221
HpyAV	CCTTC	1 cut(s)	285
HpyCH4V	TGCA	1 cut(s)	103
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 140
HpyF3I	CTNAG	3 cut(s)	42, 54, 129
Hsp92II	CATG	3 cut(s)	12, 264, 385
Kzo9I	GATC	1 cut(s)	123
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	3 cut(s)	39, 54, 324
Lsp1109I	GCAGC	4 cut(s)	37, 127, 146, 386
LweI	GCATC	1 cut(s)	37
MalI	GATC	1 cut(s)	125
MboI	GATC	1 cut(s)	123
MboII	GAAGA	4 cut(s)	133, 245, 282, 300
MluCI	AATT	2 cut(s)	71, 310
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	3 cut(s)	37, 111, 124
MroXI	GAANNNNTTC	1 cut(s)	187
MseI	TTAA	4 cut(s)	30, 86, 95, 394
MspA1I	CMGCKG	1 cut(s)	140
MwoI	GCNNNNNNNGC	2 cut(s)	134, 140
NcoI	CCATGG	1 cut(s)	8
NdeII	GATC	1 cut(s)	123
NlaIII	CATG	3 cut(s)	12, 264, 385
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	264
PciI	ACATGT	1 cut(s)	260
PdmI	GAANNNNTTC	1 cut(s)	187
PkrI	GCNGC	5 cut(s)	52, 136, 139, 142, 376
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PscI	ACATGT	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	294
PstNI	CAGNNNCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
SaqAI	TTAA	4 cut(s)	30, 86, 95, 394
SatI	GCNGC	5 cut(s)	51, 135, 138, 141, 375
Sau3AI	GATC	1 cut(s)	123
Sau96I	GGNCC	1 cut(s)	294
SchI	GAGTC	1 cut(s)	242
SetI	ASST	4 cut(s)	28, 102, 112, 226
SfaNI	GCATC	1 cut(s)	37
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
Sse9I	AATT	2 cut(s)	71, 310
SsiI	CCGC	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	8
TasI	AATT	2 cut(s)	71, 310
TauI	GCSGC	1 cut(s)	140
Tru1I	TTAA	4 cut(s)	30, 86, 95, 394
Tru9I	TTAA	4 cut(s)	30, 86, 95, 394
TseI	GCWGC	4 cut(s)	50, 134, 140, 374
XceI	RCATGY	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.