Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001479

Physical Location & Seq

Genomic Coordinates Forward (+)

21662581 .. 21666195

Gene Structure 3615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0151400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2577 bp

ATGGAGGTGGCGGCCCTTATATTTTCGACGGGCATCTCGTCGTCGATGCTGCAACCGGCTGCTGAAAGAATTATAGCTGCAATTTCATCTAGACTAGAGAAAGTTCTTGATTACGACGATAAACTTCTCAAGTTGGAGGCGAAGATGCTGAAACTTCAATGTCTTGTGGAGGATCTGGAAAAGAAGCCCGTATCCCGTTGTTGTGGAATGTTGGTAGAGAAGGTGCGGCATAGCCTTCTGGATGCTGAAGACTTGTTTAGTTACATTGAGGCGAAAGTGGGCGCGGGTGACCTGAACTATATAAAGATAACGCTAAAGCAAGACGTAACTCATATGCTTTACACTCTAAACTACTGGTGTCAAGAAATTGAAGCCCTTTTCATATCAGAGATAGCCAAGGTGAGTTCCCCACAAAATACTCTGCGCATTACTGGTAGTTGTTCCGTCATAGATGAGTCTAGGGTAATTGGGAGGGAAGACGAAAAGGAGCAAGTGGTTAGCTGGTTGTTCAGGAGTCAAAAGGGGGATGATGTTGGTGTGATACCATTCGTGGGTATGCCCGGGATTGGTAAAACTACATTAGCTCAGTCTATTTACAATGACCCATTAGTTGTTTCTAAATTTGAAATAAGGATGTGGGTGCATGTGTCGAAAGACTATGATGTTGTGAAGATAATGAAATCGATGCTAGAGTGTGCAAGAAGAAAGGTGTGCAAGTTATCACACGAGGATGTTATTAGGGATCAATTCCTAGTGGTGCTGAACAAGAAGTTTTTGCTTGTATTAGATGATTTGTGGAACGAGGCTCCCCATGATTGGGATGACTTCAAGTTACTTTTCAGAATTGCGCTTCCCGGGAGCAGGGTTATCGTAACCACTAGGAGTACAACTGTTTCTTCCATTGTTACGTCGAATGGTGATGTTTTGTGTTTGGATATCTTGTCTCATGATCACTGTTGGGGCATCATCAAGCACGGTTTAAGAACAAACGTTGAACAGCGTCCAGATTTGAAGGAGATTGGGGTGAAATTGGCAGAAAAATGTAAAGGTGTTCCCTTGGTAGCTAAGGTGATTGGGGATTACTTGCGTATCAAATCAGATCAGAGAGAATGGGATAGCCTGCTGAACTGTGACCTTTTGAACTTGGCAGCGGATGATAACAACCTCTATAATGTTCTCAAGCTGAGTTATGATCATTTGCCGGCAGATTTAAAACGTTGCTTTACCTATTGTTCTATAATTCCTCAATGTCACAGAGTTAAAGTGCAGGATTTGATTCAGATGTGGGCTGCACAAGGTTTCATTCAAGCTCAAGGAGCAAGAAGAATTGATGAAATAGGAATGGAGTATTTTAATGAGTTGTGCTCAAGGTCTCTGCTTCAAATTTCGTCCACAGGTGAGGTTAAACTGCATGACTTTATTCATGATTTTGCAAGGTTAGTTTCTGCCAACTTCTGCTTATGTGTGGATGATATGTCACGCTTCTTGAATGTGTCTTCAACTGTTCGTCATGTGTGCTTACTATATCAAGTTGATGATTCAGAAGTGTTAGCAGATCTGTTCAAAAAGTGTTGCACATATAAGAAATTGAGGACATTTATGTTGGTTTCCCACTTGGTGCAACCCTCTCGGGATTTTCTTGAGTCTGAACTCTTTGAAAAGTTTTTTCAATCATTTCATCTGTTAAGGGTTTTAGATTTAAGTGGCAGTGGCATCCGTCGTTTGTCAAACTGGGTTGGAAACAATACATGTCTTCATTATCTCAACCTTAGCCGTACTCGGATCAAAGATTTACCAGAAGGTGTAGGTAATCTGATTGGATTAGAAACATTTATCCTCCTAGATGGTCCATCTATTGGAGAATGGCCCTCAAACTTTGAGAAGTTGACTAAGCTTCGACACCTTTACTATAATAAGCAGGGTAATGGTAATATGCCAAGAGCATTGGGAAAACTAACGAGGTTGGAAACTTTGCATACATTTATTGTGAAAAGCGAAGAAGGATATGAAATTGAGGAGCTGAAAGACATGAATTGCCTCTGTGGATCTATTCTTATCAGAGGTCTTGAGAACGTGAAAGATTTTCACAAGGCTAAGGCTGCCATGTTGGAAAATAAGAAATTTCTTGACAAATTAGAGTTGCAGTGGGCTCGACAAAGAGTGCCAACAGATGAGACAATGAATGTTGATAAAGAAGTACTTCGAGGCCTTAAACCTCATAATAGGTTGACTGAGTTGGAAATAAAAGCCTATCATGGTGCTAGTTTGCCAGATTGGTTGGGCAATGCCTCTTGCAAGCTTGAGAAGCTTGTCATTGATTCGTGTGTAGAATTGGTCGGTCTACCTTCACTTCACTTAACTTCACTGAAGAAGTTAGAGATTCAGAGCTGCCCTAAGCTTGTATCATTGCCCCTGAGCGGACTACCTATCTCGCTTGAAAATCTGAATATTTCAAGAAGTGGCATAATAAAGCAGCAGTGTGAGCAAGGGGGTAGTGAGTGGGAAAAAATAAGATATATTCCCATAGTAGAAATTGAAGGTCAGCGTATACCAACCCTGCCTTCTCCAATGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009507 GO:0009536 GO:0009664 GO:0009987 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

No domains found.

Protein Analysis

858

Amino Acids

97.52

Weight (kDa)

6.64

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	159 - 324	9.3e-34	NB-ARC domain
WHD_DRP	PF23559	413 - 478	2.3e-18	Disease resistance protein Winged helix domain
LRR_14	PF23598	556 - 772	1.6e-23	Leucine-rich repeat region
LRR_R13L1-DRL21	PF25019	671 - 797	6.8e-31	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37080 AT2G37080 AT2G37080 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350
fragaria_vesca	FvH4_6g15372 FvH4_6g15372 FvH4_6g15372 FvH4_6g15372
malus_domestica	MD04G1104300.v1.1 MD12G1124200.v1.1
prunus_persica	Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1
pyrus_communis	pycom04g09910 pycom12g12260
rosa_chinensis	RchiOBHm_Chr2g0099711 RchiOBHm_Chr2g0125251 RchiOBHm_Chr3g0468851
rosa_laevigata	RLG00000024406
rosa_multiflora	Rmu_sc0001639.1_g000019
rosa_roxburghii	Rroxscaffold_4G00315970 Rroxscaffold_6G00412520
rosa_rugosa	Rorug03G0096800 Rorug03G0096900 Rorug06G0151400
rosa_samantha	Rh2BG246400 Rh2CG237000 Rh3AG146600 Rh3AG146700 Rh3BG169100 Rh3BG169200 Rh3DG205900 Rh4AG101700 Rh4CG109700 Rh4DG262400 Rh7BG297800 Rh7DG377800
rosa_wichuraiana	Rw2G026840 Rw3G013790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	425
AccB7I	CCANNNNNTGG	1 cut(s)	1856
AccBSI	CCGCTC	1 cut(s)	2418
AccI	GTMKAC	2 cut(s)	2341, 2548
AccII	CGCG	1 cut(s)	284
AciI	CCGC	5 cut(s)	11, 226, 284, 1151, 2418
AclI	AACGTT	2 cut(s)	990, 1216
AclWI	GGATC	4 cut(s)	180, 750, 1790, 2053
AcsI	RAATTY	3 cut(s)	620, 1383, 2120
AcuI	CTGAAG	2 cut(s)	267, 2387
AdeI	CACNNNGTG	1 cut(s)	1618
AfaI	GTAC	3 cut(s)	886, 1777, 2199
AfiI	CCNNNNNNNGG	7 cut(s)	551, 566, 816, 817, 861, 1856, 2417
AflIII	ACRYGT	1 cut(s)	1748
AjuI	GAANNNNNNNTTGG	2 cut(s)	2545, 2577
Alw21I	GWGCWC	1 cut(s)	1367
Alw26I	GTCTC	3 cut(s)	948, 1377, 2168
AlwI	GGATC	4 cut(s)	180, 750, 1790, 2053
Ama87I	CYCGRG	3 cut(s)	560, 854, 1629
AoxI	GGCC	3 cut(s)	12, 1865, 2206
ApeKI	GCWGC	8 cut(s)	49, 59, 77, 1148, 1289, 2099, 2388, 2473
ApoI	RAATTY	3 cut(s)	620, 1383, 2120
Asp700I	GAANNNNTTC	1 cut(s)	2199
AspLEI	GCGC	3 cut(s)	284, 426, 850
AspS9I	GGNCC	3 cut(s)	13, 1847, 1866
AsuC2I	CCSGG	4 cut(s)	561, 562, 855, 856
AsuHPI	GGTGA	6 cut(s)	299, 412, 929, 1036, 1081, 1409
AvaI	CYCGRG	3 cut(s)	560, 854, 1629
AvaII	GGWCC	1 cut(s)	1847
BaeI	ACNNNNGTAYC	2 cut(s)	1072, 1105
BanII	GRGCYC	1 cut(s)	2152
BauI	CACGAG	1 cut(s)	725
BbsI	GAAGAC	4 cut(s)	255, 483, 1488, 1745
Bbv12I	GWGCWC	1 cut(s)	1367
BbvI	GCAGC	8 cut(s)	36, 46, 64, 1160, 1276, 2086, 2375, 2485
BccI	CCATC	2 cut(s)	1838, 1858
BceAI	ACGGC	1 cut(s)	1758
BcgI	CGANNNNNNTGC	6 cut(s)	850, 884, 1610, 1644, 2132, 2166
BciVI	GTATCC	1 cut(s)	202
BclI	TGATCA	2 cut(s)	949, 1192
BcnI	CCSGG	4 cut(s)	561, 562, 855, 856
BcoDI	GTCTC	3 cut(s)	948, 1377, 2168
BfaI	CTAG	8 cut(s)	90, 95, 459, 689, 752, 879, 1841, 2262
BfuI	GTATCC	1 cut(s)	202
BglII	AGATCT	1 cut(s)	1555
BmcAI	AGTACT	1 cut(s)	2199
Bme1390I	CCNGG	4 cut(s)	561, 562, 855, 856
Bme18I	GGWCC	1 cut(s)	1847
BmeT110I	CYCGRG	3 cut(s)	560, 854, 1629
BmgT120I	GGNCC	3 cut(s)	13, 1847, 1866
BmiI	GGNNCC	1 cut(s)	807
BmrFI	CCNGG	4 cut(s)	561, 562, 855, 856
BmrI	ACTGGG	1 cut(s)	1741
BmsI	GCATC	7 cut(s)	36, 42, 135, 232, 675, 972, 1722
BmuI	ACTGGG	1 cut(s)	1741
BpiI	GAAGAC	4 cut(s)	255, 483, 1488, 1745
BplI	GAGNNNNNCTC	2 cut(s)	1349, 1381
Bpu10I	CCTNAGC	5 cut(s)	1065, 1769, 2094, 2394, 2414
BpuEI	CTTGAG	7 cut(s)	113, 1163, 1296, 1351, 1661, 2087, 2321
BpuMI	CCSGG	4 cut(s)	561, 562, 855, 856
Bsa29I	ATCGAT	1 cut(s)	683
BsaI	GGTCTC	1 cut(s)	1377
BsaJI	CCNNGG	4 cut(s)	396, 560, 854, 1056
Bsc4I	CCNNNNNNNGG	7 cut(s)	551, 566, 816, 817, 861, 1856, 2417
Bse118I	RCCGGY	2 cut(s)	55, 1201
Bse1I	ACTGG	3 cut(s)	359, 436, 1736
Bse3DI	GCAATG	2 cut(s)	2290, 2405
BseCI	ATCGAT	1 cut(s)	683
BseDI	CCNNGG	4 cut(s)	396, 560, 854, 1056
BseGI	GGATG	8 cut(s)	247, 532, 639, 736, 826, 1159, 1474, 1713
BseLI	CCNNNNNNNGG	7 cut(s)	551, 566, 816, 817, 861, 1856, 2417
BseMI	GCAATG	2 cut(s)	2290, 2405
BseMII	CTCAG	4 cut(s)	599, 1175, 2223, 2405
BseNI	ACTGG	3 cut(s)	359, 436, 1736
BseRI	GAGGAG	1 cut(s)	2030
BseXI	GCAGC	8 cut(s)	36, 46, 64, 1160, 1276, 2086, 2375, 2485
BsgI	GTGCAG	2 cut(s)	1275, 1286
Bsh1236I	CGCG	1 cut(s)	284
BshFI	GGCC	3 cut(s)	14, 1867, 2208
BshVI	ATCGAT	1 cut(s)	683
BsiHKAI	GWGCWC	1 cut(s)	1367
BsiHKCI	CYCGRG	3 cut(s)	560, 854, 1629
BsiSI	CCGG	4 cut(s)	56, 561, 855, 1202
BslI	CCNNNNNNNGG	7 cut(s)	551, 566, 816, 817, 861, 1856, 2417
BsmAI	GTCTC	3 cut(s)	948, 1377, 2168
BsnI	GGCC	3 cut(s)	14, 1867, 2208
Bso31I	GGTCTC	1 cut(s)	1377
BsoBI	CYCGRG	3 cut(s)	560, 854, 1629
Bsp1286I	GDGCHC	2 cut(s)	1367, 2152
Bsp143I	GATC	8 cut(s)	172, 742, 949, 1099, 1192, 1555, 1782, 2045
BspACI	CCGC	5 cut(s)	11, 226, 284, 1151, 2418
BspANI	GGCC	3 cut(s)	14, 1867, 2208
BspCNI	CTCAG	4 cut(s)	598, 1176, 2224, 2406
BspDI	ATCGAT	1 cut(s)	683
BspFNI	CGCG	1 cut(s)	284
BspHI	TCATGA	2 cut(s)	946, 1423
BspLI	GGNNCC	1 cut(s)	807
BspPI	GGATC	4 cut(s)	180, 750, 1790, 2053
BspTNI	GGTCTC	1 cut(s)	1377
BsrBI	CCGCTC	1 cut(s)	2418
BsrDI	GCAATG	2 cut(s)	2290, 2405
BsrFI	RCCGGY	2 cut(s)	55, 1201
BsrI	ACTGG	3 cut(s)	359, 436, 1736
BssAI	RCCGGY	2 cut(s)	55, 1201
BssECI	CCNNGG	4 cut(s)	396, 560, 854, 1056
BssMI	GATC	8 cut(s)	172, 742, 949, 1099, 1192, 1555, 1782, 2045
BssNAI	GTATAC	1 cut(s)	2549
BssSI	CACGAG	1 cut(s)	725
BssT1I	CCWWGG	2 cut(s)	396, 1056
Bst1107I	GTATAC	1 cut(s)	2549
Bst2BI	CACGAG	1 cut(s)	725
Bst4CI	ACNGT	5 cut(s)	892, 956, 977, 1130, 1504
BstC8I	GCNNGC	3 cut(s)	1121, 1203, 2297
BstDEI	CTNAG	9 cut(s)	585, 1065, 1184, 1769, 1890, 2094, 2232, 2394, 2414
BstEII	GGTNACC	1 cut(s)	287
BstF5I	GGATG	8 cut(s)	247, 532, 639, 736, 826, 1159, 1474, 1713
BstFNI	CGCG	1 cut(s)	284
BstHHI	GCGC	3 cut(s)	284, 426, 850
BstKTI	GATC	8 cut(s)	175, 745, 952, 1102, 1195, 1558, 1785, 2048
BstMAI	GTCTC	3 cut(s)	948, 1377, 2168
BstMBI	GATC	8 cut(s)	172, 742, 949, 1099, 1192, 1555, 1782, 2045
BstMWI	GCNNNNNNNGC	4 cut(s)	1316, 2099, 2305, 2482
BstNSI	RCATGY	2 cut(s)	647, 1752
BstPI	GGTNACC	1 cut(s)	287
BstSCI	CCNGG	4 cut(s)	559, 560, 853, 854
BstUI	CGCG	1 cut(s)	284
BstV1I	GCAGC	8 cut(s)	36, 46, 64, 1160, 1276, 2086, 2375, 2485
BstV2I	GAAGAC	4 cut(s)	255, 483, 1488, 1745
BstX2I	RGATCY	3 cut(s)	172, 1555, 2045
BstYI	RGATCY	3 cut(s)	172, 1555, 2045
BstZ17I	GTATAC	1 cut(s)	2549
Bsu15I	ATCGAT	1 cut(s)	683
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	3 cut(s)	14, 1867, 2208
BsuTUI	ATCGAT	1 cut(s)	683
BtsCI	GGATG	8 cut(s)	247, 532, 639, 736, 826, 1159, 1474, 1713
BtsI	GCAGTG	3 cut(s)	1714, 2150, 2483
BtsIMutI	CAGTG	5 cut(s)	952, 1714, 2150, 2363, 2483
Cac8I	GCNNGC	3 cut(s)	1121, 1203, 2297
CciI	TCATGA	2 cut(s)	946, 1423
CfoI	GCGC	3 cut(s)	284, 426, 850
Cfr10I	RCCGGY	2 cut(s)	55, 1201
Cfr13I	GGNCC	3 cut(s)	13, 1847, 1866
Cfr9I	CCCGGG	2 cut(s)	560, 854
ClaI	ATCGAT	1 cut(s)	683
CseI	GACGC	1 cut(s)	989
Csp6I	GTAC	3 cut(s)	885, 1776, 2198
CviQI	GTAC	3 cut(s)	885, 1776, 2198
DdeI	CTNAG	9 cut(s)	585, 1065, 1184, 1769, 1890, 2094, 2232, 2394, 2414
DpnI	GATC	8 cut(s)	174, 744, 951, 1101, 1194, 1557, 1784, 2047
DpnII	GATC	8 cut(s)	172, 742, 949, 1099, 1192, 1555, 1782, 2045
DraI	TTTAAA	1 cut(s)	1212
DraIII	CACNNNGTG	1 cut(s)	1618
Eco130I	CCWWGG	2 cut(s)	396, 1056
Eco147I	AGGCCT	1 cut(s)	2208
Eco24I	GRGCYC	1 cut(s)	2152
Eco31I	GGTCTC	1 cut(s)	1377
Eco32I	GATATC	1 cut(s)	937
Eco47I	GGWCC	1 cut(s)	1847
Eco57I	CTGAAG	2 cut(s)	267, 2387
Eco88I	CYCGRG	3 cut(s)	560, 854, 1629
Eco91I	GGTNACC	1 cut(s)	287
EcoO65I	GGTNACC	1 cut(s)	287
EcoRV	GATATC	1 cut(s)	937
EcoT14I	CCWWGG	2 cut(s)	396, 1056
EcoT38I	GRGCYC	1 cut(s)	2152
ErhI	CCWWGG	2 cut(s)	396, 1056
FalI	AAGNNNNNCTT	2 cut(s)	2184, 2216
FauI	CCCGC	1 cut(s)	277
FauNDI	CATATG	1 cut(s)	333
FbaI	TGATCA	2 cut(s)	949, 1192
FblI	GTMKAC	2 cut(s)	2341, 2548
FokI	GGATG	8 cut(s)	254, 539, 646, 743, 833, 1166, 1481, 1700
FriOI	GRGCYC	1 cut(s)	2152
FspBI	CTAG	8 cut(s)	90, 95, 459, 689, 752, 879, 1841, 2262
FspI	TGCGCA	1 cut(s)	425
GlaI	GCGC	3 cut(s)	283, 425, 849
HaeIII	GGCC	3 cut(s)	14, 1867, 2208
HapII	CCGG	4 cut(s)	56, 561, 855, 1202
HgaI	GACGC	1 cut(s)	989
HhaI	GCGC	3 cut(s)	284, 426, 850
Hin6I	GCGC	3 cut(s)	282, 424, 848
HinP1I	GCGC	3 cut(s)	282, 424, 848
HincII	GTYRAC	2 cut(s)	1887, 2229
HindII	GTYRAC	2 cut(s)	1887, 2229
HindIII	AAGCTT	4 cut(s)	1892, 2297, 2306, 2396
HinfI	GANTC	7 cut(s)	455, 514, 1276, 1538, 1643, 2318, 2380
HpaII	CCGG	4 cut(s)	56, 561, 855, 1202
HphI	GGTGA	6 cut(s)	299, 412, 929, 1036, 1081, 1409
Hpy166II	GTNNAC	5 cut(s)	1392, 1887, 2229, 2342, 2549
Hpy8I	GTNNAC	5 cut(s)	1392, 1887, 2229, 2342, 2549
Hpy99I	CGWCG	6 cut(s)	31, 43, 46, 119, 913, 1722
HpyAV	CCTTC	8 cut(s)	214, 245, 1006, 1793, 1994, 2355, 2531, 2571
HpyCH4III	ACNGT	5 cut(s)	892, 956, 977, 1130, 1504
HpyCH4IV	ACGT	5 cut(s)	324, 908, 990, 1216, 2073
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1316, 2099, 2305, 2482
HpyF3I	CTNAG	9 cut(s)	585, 1065, 1184, 1769, 1890, 2094, 2232, 2394, 2414
HpySE526I	ACGT	5 cut(s)	324, 908, 990, 1216, 2073
HspAI	GCGC	3 cut(s)	282, 424, 848
KroI	GCCGGC	1 cut(s)	1201
KroNI	GCCGGC	1 cut(s)	1203
Ksp22I	TGATCA	2 cut(s)	949, 1192
Kzo9I	GATC	8 cut(s)	172, 742, 949, 1099, 1192, 1555, 1782, 2045
LmnI	GCTCC	5 cut(s)	487, 811, 858, 1316, 2017
Lsp1109I	GCAGC	8 cut(s)	36, 46, 64, 1160, 1276, 2086, 2375, 2485
LweI	GCATC	7 cut(s)	36, 42, 135, 232, 675, 972, 1722
MaeI	CTAG	8 cut(s)	90, 95, 459, 689, 752, 879, 1841, 2262
MaeII	ACGT	5 cut(s)	324, 908, 990, 1216, 2073
MaeIII	GTNAC	9 cut(s)	260, 287, 325, 831, 871, 904, 1130, 1250, 1476
MalI	GATC	8 cut(s)	174, 744, 951, 1101, 1194, 1557, 1784, 2047
MbiI	CCGCTC	1 cut(s)	2418
MboI	GATC	8 cut(s)	172, 742, 949, 1099, 1192, 1555, 1782, 2045
MflI	RGATCY	3 cut(s)	172, 1555, 2045
MhlI	GDGCHC	2 cut(s)	1367, 2152
MlyI	GAGTC	3 cut(s)	464, 523, 1652
MmeI	TCCRAC	5 cut(s)	114, 1717, 1944, 2088, 2217
MroNI	GCCGGC	1 cut(s)	1201
MroXI	GAANNNNTTC	1 cut(s)	2199
MseI	TTAA	9 cut(s)	980, 1211, 1260, 1353, 1404, 1685, 1700, 2211, 2357
MslI	CAYNNNNRTG	1 cut(s)	729
MspA1I	CMGCKG	1 cut(s)	1151
MspI	CCGG	4 cut(s)	56, 561, 855, 1202
MspR9I	CCNGG	4 cut(s)	561, 562, 855, 856
MvnI	CGCG	1 cut(s)	284
MwoI	GCNNNNNNNGC	4 cut(s)	1316, 2099, 2305, 2482
NaeI	GCCGGC	1 cut(s)	1203
NciI	CCSGG	4 cut(s)	561, 562, 855, 856
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	8 cut(s)	172, 742, 949, 1099, 1192, 1555, 1782, 2045
NgoMIV	GCCGGC	1 cut(s)	1201
NlaIV	GGNNCC	1 cut(s)	807
NmuCI	GTSAC	4 cut(s)	287, 1130, 1250, 1476
NsbI	TGCGCA	1 cut(s)	425
NspI	RCATGY	2 cut(s)	647, 1752
PagI	TCATGA	2 cut(s)	946, 1423
PceI	AGGCCT	1 cut(s)	2208
PciI	ACATGT	1 cut(s)	1748
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PdiI	GCCGGC	1 cut(s)	1203
PdmI	GAANNNNTTC	1 cut(s)	2199
PfeI	GAWTC	4 cut(s)	1276, 1538, 2318, 2380
PflMI	CCANNNNNTGG	1 cut(s)	1856
PleI	GAGTC	3 cut(s)	463, 522, 1651
PpsI	GAGTC	3 cut(s)	463, 522, 1651
PscI	ACATGT	1 cut(s)	1748
Psp1406I	AACGTT	2 cut(s)	990, 1216
PspEI	GGTNACC	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	807
PspPI	GGNCC	3 cut(s)	13, 1847, 1866
PsuI	RGATCY	3 cut(s)	172, 1555, 2045
RsaI	GTAC	3 cut(s)	886, 1777, 2199
RsaNI	GTAC	3 cut(s)	885, 1776, 2198
RseI	CAYNNNNRTG	1 cut(s)	729
SaqAI	TTAA	9 cut(s)	980, 1211, 1260, 1353, 1404, 1685, 1700, 2211, 2357
Sau3AI	GATC	8 cut(s)	172, 742, 949, 1099, 1192, 1555, 1782, 2045
Sau96I	GGNCC	3 cut(s)	13, 1847, 1866
ScaI	AGTACT	1 cut(s)	2199
SchI	GAGTC	3 cut(s)	464, 523, 1652
ScrFI	CCNGG	4 cut(s)	561, 562, 855, 856
SduI	GDGCHC	2 cut(s)	1367, 2152
SfaNI	GCATC	7 cut(s)	36, 42, 135, 232, 675, 972, 1722
SinI	GGWCC	1 cut(s)	1847
SmaI	CCCGGG	2 cut(s)	562, 856
SmiMI	CAYNNNNRTG	1 cut(s)	729
SmlI	CTYRAG	7 cut(s)	128, 1178, 1311, 1366, 1640, 2066, 2300
SmoI	CTYRAG	7 cut(s)	128, 1178, 1311, 1366, 1640, 2066, 2300
SseBI	AGGCCT	1 cut(s)	2208
SsiI	CCGC	5 cut(s)	11, 226, 284, 1151, 2418
SspI	AATATT	1 cut(s)	2449
SspMI	CTAG	8 cut(s)	90, 95, 459, 689, 752, 879, 1841, 2262
StuI	AGGCCT	1 cut(s)	2208
StyD4I	CCNGG	4 cut(s)	559, 560, 853, 854
StyI	CCWWGG	2 cut(s)	396, 1056
TaaI	ACNGT	5 cut(s)	892, 956, 977, 1130, 1504
TaiI	ACGT	5 cut(s)	327, 911, 993, 1219, 2076
TaqI	TCGA	8 cut(s)	26, 44, 650, 683, 911, 1897, 2152, 2203
TaqII	GACCGA	1 cut(s)	2327
TatI	WGTACW	2 cut(s)	884, 2197
TauI	GCSGC	2 cut(s)	14, 229
TfiI	GAWTC	4 cut(s)	1276, 1538, 2318, 2380
Tru1I	TTAA	9 cut(s)	980, 1211, 1260, 1353, 1404, 1685, 1700, 2211, 2357
Tru9I	TTAA	9 cut(s)	980, 1211, 1260, 1353, 1404, 1685, 1700, 2211, 2357
TscAI	CASTG	5 cut(s)	959, 1714, 2150, 2370, 2483
TseFI	GTSAC	4 cut(s)	287, 1130, 1250, 1476
TseI	GCWGC	8 cut(s)	49, 59, 77, 1148, 1289, 2099, 2388, 2473
Tsp45I	GTSAC	4 cut(s)	287, 1130, 1250, 1476
TspGWI	ACGGA	2 cut(s)	433, 1706
TspMI	CCCGGG	2 cut(s)	560, 854
TspRI	CASTG	5 cut(s)	959, 1714, 2150, 2370, 2483
Van91I	CCANNNNNTGG	1 cut(s)	1856
VpaK11BI	GGWCC	1 cut(s)	1847
XapI	RAATTY	3 cut(s)	620, 1383, 2120
XbaI	TCTAGA	1 cut(s)	89
XceI	RCATGY	2 cut(s)	647, 1752
XmaI	CCCGGG	2 cut(s)	560, 854
XmiI	GTMKAC	2 cut(s)	2341, 2548
XmnI	GAANNNNTTC	1 cut(s)	2199
XspI	CTAG	8 cut(s)	90, 95, 459, 689, 752, 879, 1841, 2262
ZrmI	AGTACT	1 cut(s)	2199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.