MD04G1104300.v1.1

Interactor of constitutive active ROPs

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
19165518 .. 19169735
4218 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1104300.v1.1.491

Sequence Viewer

Length: 1860 bp
ATGTCGAAGATGCAGACACCAAAAGCAAAAACTGGCTCTTTGGAAGTGCCTCAAAGGAGATCTCCAGTAACACCTCGAACTACCAAGACACCTGGATCAGAGCCTGATTCGATATCTTCTCCAAATATGGCAAAGAGGACTCCGAAAAACAGAAGTCCAAAAGTCATTGAGCGCAGGTCACCACAAAGCCCAGTACCTGAGAAAAAACAACAGAAAAGAGTTTCAGAGTTGGAAACACAACTTGCTCAACTCCAAGAGGATCTGAAGAAGACAAAGGACCAGTTGAACTCAACTGAGTCACTGAAGAGGCGATCCCAGCAGGAGGCTGAAGAAGCGAAGAACCAGATATTAGCCATGTCTGCGAAGCTTGAAGAATCCCAACAGCAACTTATGGAACTTTCTACTTCTGAAGATGCTCGTCTTCAAGAACTTCGTATACTGTCTCAGGATCGGGATAGAGCATGGGAGTCTGAACTTGACGCTGTCCAACAGCAGCGTGCTATGGATTCTACTGCCCTGGCTTCTGCTATGAATGAAATTCAGAAGCTAAAGGGACAGCTCGAAAGGGTGGCTGAGTCTGAGGATGCCCAAAACAGGCATGCAGAGTCAGCATATGGTGAGATCCAGACCTTGGGAATGGAACTTTCCGAAACTTTATCTCTGGTTGAGAAATTGAAGACTGAGCTCAATGAATGCAAAGAATCTGAATCCCAGGCCCTAGAAGTTATACAAAGCACTCATATGCAATTGGAAGCCGCAAATGCAACCATAGAAATGCTCAAATCGAATGGGATGAAAGCCATGGAATCTTACAACTCCCTACCATTGGAGTTGGAGCAATCCAATGCTCGAGTTAAATCACTGGAGGGTCTTGTGAGCAAACTTCAAGCAGAACTGATTAATAGGAACGGAAATCATTTGGTAAACTCTGCAGACAATGTAAAACTTGTCAAGGAAGGTGAAGAAAATGAAGAAAGAAAACAGTTACAAGCAGAACTGAATTCTTTGAAATCCGAAGTGGGTCAATTGAGATCTGCATTGGATGCAGCTGAGGTCAGGTACCAGGAAGAATACATACAGAGCACATTGCAGATTAGGAATGTGTACGAGGAACTTGACACTGCGAAATCTGAAGCGTTGGAGAGGGAAGCTGAGCTGGCAGCAGAAATGAAGAAAGCAAAGGATCATATTGAAGACTTGAGAGCACAGCTAATGGATAAGGAAACTGAATTAGAGAGTACATCAGAGAAAAATGATGGGGTTGCCGTGAAAATTGAGAAAAGTATAACTGAAAATGAATCCAAAATTGCACTGGAGCTAAAGAAGTCGGAGACTGTAATGGTAGAGTTGAAGGCGAGTTTGTTGGATAAGGAGACAGAATTGCAGAATATAGCTGAGGAGAATGAAATGCTCAAGATGGAACTTAAAAACAAGGAAACGGAGAGGAATAAAGTTAATGACGATGCTGTTGTTTCGGCAGAAGCTGCAAGGGCTGCAGAGCGAGAGGCTTTGATGAAACTTGGCTATGCGACAGAGGAAGTACATAAAAGTACCAGGAGAGCCGCACGGGTGACTGAGCAGCTGGATACAGCACAGGCTGCAAATTCTGAAATGGAGGCTGAGTTAAGGAAGTTAAAGGTGCAGGCGGATCAGTGGAGGAAGGCTGCTGAGGCAGCTGCTGCCATGCTTTCAACTGGAAACAATGGGAAACTTGTCGAGAGAACAGGTTCTCTTGACTGCAACAACTACAATCCCTTGAGTTCACCTTATTCAGAAGACATGAATGATGACTCGCCGAAGAAGAAAAACGGGAATATGTTAAAGAAGATCGGCGTCTTATGGAAGAAGGGCCAAAACTAG

Protein Analysis

620

Amino Acids

69.51

Weight (kDa)

5.2

Isoelectric Point (pI)

59.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 165
Acc65I GGTACC 1 cut(s) 1059
AccB1I GGYRCC 1 cut(s) 1059
AccB7I CCANNNNNTGG 1 cut(s) 631
AccI GTMKAC 1 cut(s) 436
AciI CCGC 3 cut(s) 756, 1563, 1646
AclWI GGATC 7 cut(s) 103, 267, 306, 456, 616, 1191, 1656
AcsI RAATTY 3 cut(s) 537, 1000, 1603
AcuI CTGAAG 5 cut(s) 284, 323, 348, 429, 1152
AcyI GRCGYC 1 cut(s) 1833
AfaI GTAC 6 cut(s) 195, 1061, 1106, 1240, 1542, 1552
AfiI CCNNNNNNNGG 4 cut(s) 322, 594, 631, 826
AgsI TTSAA 9 cut(s) 286, 371, 425, 676, 887, 1009, 1193, 1351, 1692
AjnI CCWGG 5 cut(s) 91, 516, 711, 1062, 1553
Alw21I GWGCWC 3 cut(s) 687, 1085, 1207
Alw26I GTCTC 3 cut(s) 447, 1325, 1367
AlwI GGATC 7 cut(s) 103, 267, 306, 456, 616, 1191, 1656
AlwNI CAGNNNCTG 4 cut(s) 104, 197, 1484, 1679
Ama87I CYCGRG 1 cut(s) 849
AoxI GGCC 2 cut(s) 714, 1849
ApoI RAATTY 3 cut(s) 537, 1000, 1603
AseI ATTAAT 1 cut(s) 900
Asp700I GAANNNNTTC 1 cut(s) 1726
Asp718I GGTACC 1 cut(s) 1059
AspLEI GCGC 1 cut(s) 174
AspS9I GGNCC 3 cut(s) 277, 715, 1849
AsuHPI GGTGA 5 cut(s) 171, 629, 971, 1582, 1755
AvaI CYCGRG 1 cut(s) 849
AvaII GGWCC 1 cut(s) 277
BanI GGYRCC 1 cut(s) 1059
BanII GRGCYC 1 cut(s) 687
BarI GAAGNNNNNNTAC 2 cut(s) 1059, 1091
BbsI GAAGAC 5 cut(s) 275, 413, 683, 1200, 1782
Bbv12I GWGCWC 3 cut(s) 687, 1085, 1207
BbvCI CCTCAGC 3 cut(s) 1050, 1395, 1668
BccI CCATC 2 cut(s) 1250, 1411
BceAI ACGGC 1 cut(s) 1250
BciT130I CCWGG 5 cut(s) 93, 518, 713, 1064, 1555
BciVI GTATCC 1 cut(s) 1579
BcoDI GTCTC 3 cut(s) 447, 1325, 1367
BfaI CTAG 2 cut(s) 719, 1858
BfmI CTRYAG 2 cut(s) 930, 1494
BfuAI ACCTGC 1 cut(s) 165
BfuI GTATCC 1 cut(s) 1579
BglII AGATCT 2 cut(s) 59, 1031
BlpI GCTNAGC 1 cut(s) 1152
Bme1390I CCNGG 5 cut(s) 93, 518, 713, 1064, 1555
Bme18I GGWCC 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 849
BmgT120I GGNCC 3 cut(s) 277, 715, 1849
BmiI GGNNCC 1 cut(s) 1061
BmrFI CCNGG 5 cut(s) 93, 518, 713, 1064, 1555
BmrI ACTGGG 1 cut(s) 185
BmsI GCATC 4 cut(s) 403, 574, 1033, 1453
BmuI ACTGGG 1 cut(s) 185
BpiI GAAGAC 5 cut(s) 275, 413, 683, 1200, 1782
BpmI CTGGAG 3 cut(s) 48, 884, 1334
Bpu10I CCTNAGC 3 cut(s) 1050, 1395, 1668
Bpu1102I GCTNAGC 1 cut(s) 1152
BpuEI CTTGAG 3 cut(s) 1219, 1397, 1777
BsaHI GRCGYC 1 cut(s) 1833
BsaJI CCNNGG 4 cut(s) 516, 630, 711, 801
BsaXI ACNNNNNCTCC 2 cut(s) 1607, 1637
Bsc4I CCNNNNNNNGG 4 cut(s) 322, 594, 631, 826
Bse1I ACTGG 7 cut(s) 37, 65, 191, 280, 867, 1317, 1699
Bse3DI GCAATG 1 cut(s) 1085
BseBI CCWGG 5 cut(s) 93, 518, 713, 1064, 1555
BseDI CCNNGG 4 cut(s) 516, 630, 711, 801
BseGI GGATG 3 cut(s) 589, 798, 1048
BseLI CCNNNNNNNGG 4 cut(s) 322, 594, 631, 826
BseMI GCAATG 1 cut(s) 1085
BseNI ACTGG 7 cut(s) 37, 65, 191, 280, 867, 1317, 1699
BseRI GAGGAG 1 cut(s) 1412
BseYI CCCAGC 1 cut(s) 315
BsgI GTGCAG 1 cut(s) 1661
BshFI GGCC 2 cut(s) 716, 1851
BshNI GGYRCC 1 cut(s) 1059
BsiHKAI GWGCWC 3 cut(s) 687, 1085, 1207
BsiHKCI CYCGRG 1 cut(s) 849
BslFI GGGAC 1 cut(s) 567
BslI CCNNNNNNNGG 4 cut(s) 322, 594, 631, 826
BsmAI GTCTC 3 cut(s) 447, 1325, 1367
BsmFI GGGAC 1 cut(s) 567
BsmI GAATGC 1 cut(s) 698
BsnI GGCC 2 cut(s) 716, 1851
BsoBI CYCGRG 1 cut(s) 849
Bsp1286I GDGCHC 3 cut(s) 687, 1085, 1207
Bsp1720I GCTNAGC 1 cut(s) 1152
Bsp19I CCATGG 1 cut(s) 801
BspACI CCGC 3 cut(s) 756, 1563, 1646
BspANI GGCC 2 cut(s) 716, 1851
BspLI GGNNCC 1 cut(s) 1061
BspMAI CTGCAG 2 cut(s) 934, 1498
BspMI ACCTGC 1 cut(s) 165
BspPI GGATC 7 cut(s) 103, 267, 306, 456, 616, 1191, 1656
BspT107I GGYRCC 1 cut(s) 1059
BsrDI GCAATG 1 cut(s) 1085
BsrI ACTGG 7 cut(s) 37, 65, 191, 280, 867, 1317, 1699
BssECI CCNNGG 4 cut(s) 516, 630, 711, 801
BssNAI GTATAC 1 cut(s) 437
BssNI GRCGYC 1 cut(s) 1833
BssT1I CCWWGG 2 cut(s) 630, 801
Bst1107I GTATAC 1 cut(s) 437
Bst2UI CCWGG 5 cut(s) 93, 518, 713, 1064, 1555
Bst4CI ACNGT 3 cut(s) 441, 984, 1336
Bst6I CTCTTC 1 cut(s) 299
BstACI GRCGYC 1 cut(s) 1833
BstAPI GCANNNNNTGC 5 cut(s) 1043, 1484, 1493, 1598, 1679
BstC8I GCNNGC 4 cut(s) 498, 600, 1158, 1644
BstDSI CCRYGG 1 cut(s) 801
BstEII GGTNACC 1 cut(s) 177
BstF5I GGATG 3 cut(s) 589, 798, 1048
BstHHI GCGC 1 cut(s) 174
BstMAI GTCTC 3 cut(s) 447, 1325, 1367
BstNI CCWGG 5 cut(s) 93, 518, 713, 1064, 1555
BstNSI RCATGY 1 cut(s) 602
BstPI GGTNACC 1 cut(s) 177
BstSCI CCNGG 5 cut(s) 91, 516, 711, 1062, 1553
BstSFI CTRYAG 2 cut(s) 930, 1494
BstV2I GAAGAC 5 cut(s) 275, 413, 683, 1200, 1782
BstX2I RGATCY 4 cut(s) 59, 259, 621, 1031
BstYI RGATCY 4 cut(s) 59, 259, 621, 1031
BstZ17I GTATAC 1 cut(s) 437
BsuI GTATCC 1 cut(s) 1579
BsuRI GGCC 2 cut(s) 716, 1851
BtgI CCRYGG 1 cut(s) 801
BtsCI GGATG 3 cut(s) 589, 798, 1048
BtsI GCAGTG 1 cut(s) 1119
BtsIMutI CAGTG 5 cut(s) 299, 860, 1119, 1310, 1658
BveI ACCTGC 1 cut(s) 165
Cac8I GCNNGC 4 cut(s) 498, 600, 1158, 1644
CaiI CAGNNNCTG 4 cut(s) 104, 197, 1484, 1679
CfoI GCGC 1 cut(s) 174
Cfr13I GGNCC 3 cut(s) 277, 715, 1849
CseI GACGC 2 cut(s) 488, 1822
Csp6I GTAC 6 cut(s) 194, 1060, 1105, 1239, 1541, 1551
CviAII CATG 6 cut(s) 355, 462, 599, 802, 1684, 1780
CviQI GTAC 6 cut(s) 194, 1060, 1105, 1239, 1541, 1551
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
EciI GGCGGA 1 cut(s) 1661
Ecl136II GAGCTC 1 cut(s) 685
Eco130I CCWWGG 2 cut(s) 630, 801
Eco24I GRGCYC 1 cut(s) 687
Eco32I GATATC 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 277
Eco53kI GAGCTC 1 cut(s) 685
Eco57I CTGAAG 5 cut(s) 284, 323, 348, 429, 1152
Eco88I CYCGRG 1 cut(s) 849
Eco91I GGTNACC 1 cut(s) 177
EcoICRI GAGCTC 1 cut(s) 685
EcoO109I RGGNCCY 1 cut(s) 715
EcoO65I GGTNACC 1 cut(s) 177
EcoRI GAATTC 1 cut(s) 1000
EcoRII CCWGG 5 cut(s) 91, 516, 711, 1062, 1553
EcoRV GATATC 1 cut(s) 114
EcoT14I CCWWGG 2 cut(s) 630, 801
EcoT38I GRGCYC 1 cut(s) 687
ErhI CCWWGG 2 cut(s) 630, 801
FaeI CATG 6 cut(s) 358, 465, 602, 805, 1687, 1783
FaqI GGGAC 1 cut(s) 567
FatI CATG 6 cut(s) 354, 461, 598, 801, 1683, 1779
FauNDI CATATG 2 cut(s) 613, 741
FblI GTMKAC 1 cut(s) 436
FokI GGATG 3 cut(s) 596, 805, 1055
FriOI GRGCYC 1 cut(s) 687
FspBI CTAG 2 cut(s) 719, 1858
GlaI GCGC 1 cut(s) 173
GsaI CCCAGC 1 cut(s) 319
GsuI CTGGAG 3 cut(s) 48, 884, 1334
HaeIII GGCC 2 cut(s) 716, 1851
HgaI GACGC 2 cut(s) 488, 1822
HhaI GCGC 1 cut(s) 174
Hin1I GRCGYC 1 cut(s) 1833
Hin1II CATG 6 cut(s) 358, 465, 602, 805, 1687, 1783
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HindIII AAGCTT 1 cut(s) 365
HphI GGTGA 5 cut(s) 171, 629, 971, 1582, 1755
Hpy166II GTNNAC 4 cut(s) 437, 925, 1105, 1763
Hpy188III TCNNGA 7 cut(s) 425, 446, 452, 625, 1414, 1717, 1733
Hpy8I GTNNAC 4 cut(s) 437, 925, 1105, 1763
HpyAV CCTTC 4 cut(s) 950, 1345, 1654, 1840
HpyCH4III ACNGT 3 cut(s) 441, 984, 1336
Hsp92I GRCGYC 1 cut(s) 1833
Hsp92II CATG 6 cut(s) 358, 465, 602, 805, 1687, 1783
HspAI GCGC 1 cut(s) 172
KpnI GGTACC 1 cut(s) 1063
LmnI GCTCC 2 cut(s) 835, 1315
LweI GCATC 4 cut(s) 403, 574, 1033, 1453
MaeI CTAG 2 cut(s) 719, 1858
MaeIII GTNAC 5 cut(s) 67, 177, 297, 984, 1570
MfeI CAATTG 2 cut(s) 746, 1025
MflI RGATCY 4 cut(s) 59, 259, 621, 1031
MhlI GDGCHC 3 cut(s) 687, 1085, 1207
MlyI GAGTC 6 cut(s) 133, 305, 476, 584, 614, 1784
MmeI TCCRAC 6 cut(s) 210, 511, 813, 1119, 1308, 1344
MroXI GAANNNNTTC 1 cut(s) 1726
MseI TTAA 7 cut(s) 855, 900, 1425, 1455, 1625, 1634, 1820
MslI CAYNNNNRTG 2 cut(s) 740, 773
MspA1I CMGCKG 3 cut(s) 1049, 1582, 1676
MspR9I CCNGG 5 cut(s) 93, 518, 713, 1064, 1555
MunI CAATTG 2 cut(s) 746, 1025
Mva1269I GAATGC 1 cut(s) 698
MvaI CCWGG 5 cut(s) 93, 518, 713, 1064, 1555
NcoI CCATGG 1 cut(s) 801
NdeI CATATG 2 cut(s) 613, 741
NlaIII CATG 6 cut(s) 358, 465, 602, 805, 1687, 1783
NlaIV GGNNCC 1 cut(s) 1061
NmuCI GTSAC 3 cut(s) 177, 297, 1570
NspI RCATGY 1 cut(s) 602
PaeI GCATGC 1 cut(s) 602
PaeR7I CTCGAG 1 cut(s) 849
PctI GAATGC 1 cut(s) 698
PdmI GAANNNNTTC 1 cut(s) 1726
PfeI GAWTC 7 cut(s) 107, 374, 506, 701, 707, 806, 1298
PflFI GACNNNGTC 1 cut(s) 482
PflMI CCANNNNNTGG 1 cut(s) 631
PleI GAGTC 6 cut(s) 133, 304, 475, 583, 613, 1784
PpsI GAGTC 6 cut(s) 133, 304, 475, 583, 613, 1784
PshBI ATTAAT 1 cut(s) 900
Psp124BI GAGCTC 1 cut(s) 687
Psp6I CCWGG 5 cut(s) 91, 516, 711, 1062, 1553
PspEI GGTNACC 1 cut(s) 177
PspFI CCCAGC 1 cut(s) 315
PspGI CCWGG 5 cut(s) 91, 516, 711, 1062, 1553
PspN4I GGNNCC 1 cut(s) 1061
PspPI GGNCC 3 cut(s) 277, 715, 1849
PspXI VCTCGAGB 1 cut(s) 849
PsrI GAACNNNNNNTAC 2 cut(s) 420, 452
PstI CTGCAG 2 cut(s) 934, 1498
PstNI CAGNNNCTG 4 cut(s) 104, 197, 1484, 1679
PsuI RGATCY 4 cut(s) 59, 259, 621, 1031
PsyI GACNNNGTC 1 cut(s) 482
PvuII CAGCTG 3 cut(s) 1049, 1582, 1676
RsaI GTAC 6 cut(s) 195, 1061, 1106, 1240, 1542, 1552
RsaNI GTAC 6 cut(s) 194, 1060, 1105, 1239, 1541, 1551
RseI CAYNNNNRTG 2 cut(s) 740, 773
SacI GAGCTC 1 cut(s) 687
SaqAI TTAA 7 cut(s) 855, 900, 1425, 1455, 1625, 1634, 1820
Sau96I GGNCC 3 cut(s) 277, 715, 1849
SchI GAGTC 6 cut(s) 133, 305, 476, 584, 614, 1784
ScrFI CCNGG 5 cut(s) 93, 518, 713, 1064, 1555
SduI GDGCHC 3 cut(s) 687, 1085, 1207
SfaNI GCATC 4 cut(s) 403, 574, 1033, 1453
SfcI CTRYAG 2 cut(s) 930, 1494
Sfr274I CTCGAG 1 cut(s) 849
SinI GGWCC 1 cut(s) 277
SlaI CTCGAG 1 cut(s) 849
SmiMI CAYNNNNRTG 2 cut(s) 740, 773
SmlI CTYRAG 4 cut(s) 849, 1198, 1412, 1756
SmoI CTYRAG 4 cut(s) 849, 1198, 1412, 1756
SphI GCATGC 1 cut(s) 602
SsiI CCGC 3 cut(s) 756, 1563, 1646
SspMI CTAG 2 cut(s) 719, 1858
SstI GAGCTC 1 cut(s) 687
StyD4I CCNGG 5 cut(s) 91, 516, 711, 1062, 1553
StyI CCWWGG 2 cut(s) 630, 801
TaaI ACNGT 3 cut(s) 441, 984, 1336
TaqI TCGA 7 cut(s) 5, 76, 110, 561, 785, 850, 1716
TatI WGTACW 2 cut(s) 1238, 1540
TauI GCSGC 2 cut(s) 758, 1565
TfiI GAWTC 7 cut(s) 107, 374, 506, 701, 707, 806, 1298
Tru1I TTAA 7 cut(s) 855, 900, 1425, 1455, 1625, 1634, 1820
Tru9I TTAA 7 cut(s) 855, 900, 1425, 1455, 1625, 1634, 1820
TscAI CASTG 5 cut(s) 306, 867, 1126, 1317, 1658
TseFI GTSAC 3 cut(s) 177, 297, 1570
Tsp45I GTSAC 3 cut(s) 177, 297, 1570
TspGWI ACGGA 2 cut(s) 924, 1454
TspRI CASTG 5 cut(s) 306, 867, 1126, 1317, 1658
Tth111I GACNNNGTC 1 cut(s) 482
Van91I CCANNNNNTGG 1 cut(s) 631
VpaK11BI GGWCC 1 cut(s) 277
VspI ATTAAT 1 cut(s) 900
XapI RAATTY 3 cut(s) 537, 1000, 1603
XceI RCATGY 1 cut(s) 602
XcmI CCANNNNNNNNNTGG 1 cut(s) 1309
XhoI CTCGAG 1 cut(s) 849
XmiI GTMKAC 1 cut(s) 436
XmnI GAANNNNTTC 1 cut(s) 1726
XspI CTAG 2 cut(s) 719, 1858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.