Interactor of constitutive active ROPs
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G37080 AT2G37080 AT2G37080 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 |
| fragaria_vesca | FvH4_6g15372 FvH4_6g15372 FvH4_6g15372 FvH4_6g15372 |
| malus_domestica | MD04G1104300.v1.1 MD12G1124200.v1.1 |
| prunus_persica | Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 |
| pyrus_communis | pycom04g09910 pycom12g12260 |
| rosa_chinensis | RchiOBHm_Chr2g0099711 RchiOBHm_Chr2g0125251 RchiOBHm_Chr3g0468851 |
| rosa_laevigata | RLG00000024406 |
| rosa_multiflora | Rmu_sc0001639.1_g000019 |
| rosa_roxburghii | Rroxscaffold_4G00315970 Rroxscaffold_6G00412520 |
| rosa_rugosa | Rorug03G0096800 Rorug03G0096900 Rorug06G0151400 |
| rosa_samantha | Rh2BG246400 Rh2CG237000 Rh3AG146600 Rh3AG146700 Rh3BG169100 Rh3BG169200 Rh3DG205900 Rh4AG101700 Rh4CG109700 Rh4DG262400 Rh7BG297800 Rh7DG377800 |
| rosa_wichuraiana | Rw2G026840 Rw3G013790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 165 |
| Acc65I | GGTACC | 1 cut(s) | 1059 |
| AccB1I | GGYRCC | 1 cut(s) | 1059 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 631 |
| AccI | GTMKAC | 1 cut(s) | 436 |
| AciI | CCGC | 3 cut(s) | 756, 1563, 1646 |
| AclWI | GGATC | 7 cut(s) | 103, 267, 306, 456, 616, 1191, 1656 |
| AcsI | RAATTY | 3 cut(s) | 537, 1000, 1603 |
| AcuI | CTGAAG | 5 cut(s) | 284, 323, 348, 429, 1152 |
| AcyI | GRCGYC | 1 cut(s) | 1833 |
| AfaI | GTAC | 6 cut(s) | 195, 1061, 1106, 1240, 1542, 1552 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 322, 594, 631, 826 |
| AgsI | TTSAA | 9 cut(s) | 286, 371, 425, 676, 887, 1009, 1193, 1351, 1692 |
| AjnI | CCWGG | 5 cut(s) | 91, 516, 711, 1062, 1553 |
| Alw21I | GWGCWC | 3 cut(s) | 687, 1085, 1207 |
| Alw26I | GTCTC | 3 cut(s) | 447, 1325, 1367 |
| AlwI | GGATC | 7 cut(s) | 103, 267, 306, 456, 616, 1191, 1656 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 104, 197, 1484, 1679 |
| Ama87I | CYCGRG | 1 cut(s) | 849 |
| AoxI | GGCC | 2 cut(s) | 714, 1849 |
| ApoI | RAATTY | 3 cut(s) | 537, 1000, 1603 |
| AseI | ATTAAT | 1 cut(s) | 900 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1726 |
| Asp718I | GGTACC | 1 cut(s) | 1059 |
| AspLEI | GCGC | 1 cut(s) | 174 |
| AspS9I | GGNCC | 3 cut(s) | 277, 715, 1849 |
| AsuHPI | GGTGA | 5 cut(s) | 171, 629, 971, 1582, 1755 |
| AvaI | CYCGRG | 1 cut(s) | 849 |
| AvaII | GGWCC | 1 cut(s) | 277 |
| BanI | GGYRCC | 1 cut(s) | 1059 |
| BanII | GRGCYC | 1 cut(s) | 687 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1059, 1091 |
| BbsI | GAAGAC | 5 cut(s) | 275, 413, 683, 1200, 1782 |
| Bbv12I | GWGCWC | 3 cut(s) | 687, 1085, 1207 |
| BbvCI | CCTCAGC | 3 cut(s) | 1050, 1395, 1668 |
| BccI | CCATC | 2 cut(s) | 1250, 1411 |
| BceAI | ACGGC | 1 cut(s) | 1250 |
| BciT130I | CCWGG | 5 cut(s) | 93, 518, 713, 1064, 1555 |
| BciVI | GTATCC | 1 cut(s) | 1579 |
| BcoDI | GTCTC | 3 cut(s) | 447, 1325, 1367 |
| BfaI | CTAG | 2 cut(s) | 719, 1858 |
| BfmI | CTRYAG | 2 cut(s) | 930, 1494 |
| BfuAI | ACCTGC | 1 cut(s) | 165 |
| BfuI | GTATCC | 1 cut(s) | 1579 |
| BglII | AGATCT | 2 cut(s) | 59, 1031 |
| BlpI | GCTNAGC | 1 cut(s) | 1152 |
| Bme1390I | CCNGG | 5 cut(s) | 93, 518, 713, 1064, 1555 |
| Bme18I | GGWCC | 1 cut(s) | 277 |
| BmeT110I | CYCGRG | 1 cut(s) | 849 |
| BmgT120I | GGNCC | 3 cut(s) | 277, 715, 1849 |
| BmiI | GGNNCC | 1 cut(s) | 1061 |
| BmrFI | CCNGG | 5 cut(s) | 93, 518, 713, 1064, 1555 |
| BmrI | ACTGGG | 1 cut(s) | 185 |
| BmsI | GCATC | 4 cut(s) | 403, 574, 1033, 1453 |
| BmuI | ACTGGG | 1 cut(s) | 185 |
| BpiI | GAAGAC | 5 cut(s) | 275, 413, 683, 1200, 1782 |
| BpmI | CTGGAG | 3 cut(s) | 48, 884, 1334 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1050, 1395, 1668 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1152 |
| BpuEI | CTTGAG | 3 cut(s) | 1219, 1397, 1777 |
| BsaHI | GRCGYC | 1 cut(s) | 1833 |
| BsaJI | CCNNGG | 4 cut(s) | 516, 630, 711, 801 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1607, 1637 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 322, 594, 631, 826 |
| Bse1I | ACTGG | 7 cut(s) | 37, 65, 191, 280, 867, 1317, 1699 |
| Bse3DI | GCAATG | 1 cut(s) | 1085 |
| BseBI | CCWGG | 5 cut(s) | 93, 518, 713, 1064, 1555 |
| BseDI | CCNNGG | 4 cut(s) | 516, 630, 711, 801 |
| BseGI | GGATG | 3 cut(s) | 589, 798, 1048 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 322, 594, 631, 826 |
| BseMI | GCAATG | 1 cut(s) | 1085 |
| BseNI | ACTGG | 7 cut(s) | 37, 65, 191, 280, 867, 1317, 1699 |
| BseRI | GAGGAG | 1 cut(s) | 1412 |
| BseYI | CCCAGC | 1 cut(s) | 315 |
| BsgI | GTGCAG | 1 cut(s) | 1661 |
| BshFI | GGCC | 2 cut(s) | 716, 1851 |
| BshNI | GGYRCC | 1 cut(s) | 1059 |
| BsiHKAI | GWGCWC | 3 cut(s) | 687, 1085, 1207 |
| BsiHKCI | CYCGRG | 1 cut(s) | 849 |
| BslFI | GGGAC | 1 cut(s) | 567 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 322, 594, 631, 826 |
| BsmAI | GTCTC | 3 cut(s) | 447, 1325, 1367 |
| BsmFI | GGGAC | 1 cut(s) | 567 |
| BsmI | GAATGC | 1 cut(s) | 698 |
| BsnI | GGCC | 2 cut(s) | 716, 1851 |
| BsoBI | CYCGRG | 1 cut(s) | 849 |
| Bsp1286I | GDGCHC | 3 cut(s) | 687, 1085, 1207 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1152 |
| Bsp19I | CCATGG | 1 cut(s) | 801 |
| BspACI | CCGC | 3 cut(s) | 756, 1563, 1646 |
| BspANI | GGCC | 2 cut(s) | 716, 1851 |
| BspLI | GGNNCC | 1 cut(s) | 1061 |
| BspMAI | CTGCAG | 2 cut(s) | 934, 1498 |
| BspMI | ACCTGC | 1 cut(s) | 165 |
| BspPI | GGATC | 7 cut(s) | 103, 267, 306, 456, 616, 1191, 1656 |
| BspT107I | GGYRCC | 1 cut(s) | 1059 |
| BsrDI | GCAATG | 1 cut(s) | 1085 |
| BsrI | ACTGG | 7 cut(s) | 37, 65, 191, 280, 867, 1317, 1699 |
| BssECI | CCNNGG | 4 cut(s) | 516, 630, 711, 801 |
| BssNAI | GTATAC | 1 cut(s) | 437 |
| BssNI | GRCGYC | 1 cut(s) | 1833 |
| BssT1I | CCWWGG | 2 cut(s) | 630, 801 |
| Bst1107I | GTATAC | 1 cut(s) | 437 |
| Bst2UI | CCWGG | 5 cut(s) | 93, 518, 713, 1064, 1555 |
| Bst4CI | ACNGT | 3 cut(s) | 441, 984, 1336 |
| Bst6I | CTCTTC | 1 cut(s) | 299 |
| BstACI | GRCGYC | 1 cut(s) | 1833 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 1043, 1484, 1493, 1598, 1679 |
| BstC8I | GCNNGC | 4 cut(s) | 498, 600, 1158, 1644 |
| BstDSI | CCRYGG | 1 cut(s) | 801 |
| BstEII | GGTNACC | 1 cut(s) | 177 |
| BstF5I | GGATG | 3 cut(s) | 589, 798, 1048 |
| BstHHI | GCGC | 1 cut(s) | 174 |
| BstMAI | GTCTC | 3 cut(s) | 447, 1325, 1367 |
| BstNI | CCWGG | 5 cut(s) | 93, 518, 713, 1064, 1555 |
| BstNSI | RCATGY | 1 cut(s) | 602 |
| BstPI | GGTNACC | 1 cut(s) | 177 |
| BstSCI | CCNGG | 5 cut(s) | 91, 516, 711, 1062, 1553 |
| BstSFI | CTRYAG | 2 cut(s) | 930, 1494 |
| BstV2I | GAAGAC | 5 cut(s) | 275, 413, 683, 1200, 1782 |
| BstX2I | RGATCY | 4 cut(s) | 59, 259, 621, 1031 |
| BstYI | RGATCY | 4 cut(s) | 59, 259, 621, 1031 |
| BstZ17I | GTATAC | 1 cut(s) | 437 |
| BsuI | GTATCC | 1 cut(s) | 1579 |
| BsuRI | GGCC | 2 cut(s) | 716, 1851 |
| BtgI | CCRYGG | 1 cut(s) | 801 |
| BtsCI | GGATG | 3 cut(s) | 589, 798, 1048 |
| BtsI | GCAGTG | 1 cut(s) | 1119 |
| BtsIMutI | CAGTG | 5 cut(s) | 299, 860, 1119, 1310, 1658 |
| BveI | ACCTGC | 1 cut(s) | 165 |
| Cac8I | GCNNGC | 4 cut(s) | 498, 600, 1158, 1644 |
| CaiI | CAGNNNCTG | 4 cut(s) | 104, 197, 1484, 1679 |
| CfoI | GCGC | 1 cut(s) | 174 |
| Cfr13I | GGNCC | 3 cut(s) | 277, 715, 1849 |
| CseI | GACGC | 2 cut(s) | 488, 1822 |
| Csp6I | GTAC | 6 cut(s) | 194, 1060, 1105, 1239, 1541, 1551 |
| CviAII | CATG | 6 cut(s) | 355, 462, 599, 802, 1684, 1780 |
| CviQI | GTAC | 6 cut(s) | 194, 1060, 1105, 1239, 1541, 1551 |
| Eam1104I | CTCTTC | 1 cut(s) | 299 |
| EarI | CTCTTC | 1 cut(s) | 299 |
| EciI | GGCGGA | 1 cut(s) | 1661 |
| Ecl136II | GAGCTC | 1 cut(s) | 685 |
| Eco130I | CCWWGG | 2 cut(s) | 630, 801 |
| Eco24I | GRGCYC | 1 cut(s) | 687 |
| Eco32I | GATATC | 1 cut(s) | 114 |
| Eco47I | GGWCC | 1 cut(s) | 277 |
| Eco53kI | GAGCTC | 1 cut(s) | 685 |
| Eco57I | CTGAAG | 5 cut(s) | 284, 323, 348, 429, 1152 |
| Eco88I | CYCGRG | 1 cut(s) | 849 |
| Eco91I | GGTNACC | 1 cut(s) | 177 |
| EcoICRI | GAGCTC | 1 cut(s) | 685 |
| EcoO109I | RGGNCCY | 1 cut(s) | 715 |
| EcoO65I | GGTNACC | 1 cut(s) | 177 |
| EcoRI | GAATTC | 1 cut(s) | 1000 |
| EcoRII | CCWGG | 5 cut(s) | 91, 516, 711, 1062, 1553 |
| EcoRV | GATATC | 1 cut(s) | 114 |
| EcoT14I | CCWWGG | 2 cut(s) | 630, 801 |
| EcoT38I | GRGCYC | 1 cut(s) | 687 |
| ErhI | CCWWGG | 2 cut(s) | 630, 801 |
| FaeI | CATG | 6 cut(s) | 358, 465, 602, 805, 1687, 1783 |
| FaqI | GGGAC | 1 cut(s) | 567 |
| FatI | CATG | 6 cut(s) | 354, 461, 598, 801, 1683, 1779 |
| FauNDI | CATATG | 2 cut(s) | 613, 741 |
| FblI | GTMKAC | 1 cut(s) | 436 |
| FokI | GGATG | 3 cut(s) | 596, 805, 1055 |
| FriOI | GRGCYC | 1 cut(s) | 687 |
| FspBI | CTAG | 2 cut(s) | 719, 1858 |
| GlaI | GCGC | 1 cut(s) | 173 |
| GsaI | CCCAGC | 1 cut(s) | 319 |
| GsuI | CTGGAG | 3 cut(s) | 48, 884, 1334 |
| HaeIII | GGCC | 2 cut(s) | 716, 1851 |
| HgaI | GACGC | 2 cut(s) | 488, 1822 |
| HhaI | GCGC | 1 cut(s) | 174 |
| Hin1I | GRCGYC | 1 cut(s) | 1833 |
| Hin1II | CATG | 6 cut(s) | 358, 465, 602, 805, 1687, 1783 |
| Hin6I | GCGC | 1 cut(s) | 172 |
| HinP1I | GCGC | 1 cut(s) | 172 |
| HindIII | AAGCTT | 1 cut(s) | 365 |
| HphI | GGTGA | 5 cut(s) | 171, 629, 971, 1582, 1755 |
| Hpy166II | GTNNAC | 4 cut(s) | 437, 925, 1105, 1763 |
| Hpy188III | TCNNGA | 7 cut(s) | 425, 446, 452, 625, 1414, 1717, 1733 |
| Hpy8I | GTNNAC | 4 cut(s) | 437, 925, 1105, 1763 |
| HpyAV | CCTTC | 4 cut(s) | 950, 1345, 1654, 1840 |
| HpyCH4III | ACNGT | 3 cut(s) | 441, 984, 1336 |
| Hsp92I | GRCGYC | 1 cut(s) | 1833 |
| Hsp92II | CATG | 6 cut(s) | 358, 465, 602, 805, 1687, 1783 |
| HspAI | GCGC | 1 cut(s) | 172 |
| KpnI | GGTACC | 1 cut(s) | 1063 |
| LmnI | GCTCC | 2 cut(s) | 835, 1315 |
| LweI | GCATC | 4 cut(s) | 403, 574, 1033, 1453 |
| MaeI | CTAG | 2 cut(s) | 719, 1858 |
| MaeIII | GTNAC | 5 cut(s) | 67, 177, 297, 984, 1570 |
| MfeI | CAATTG | 2 cut(s) | 746, 1025 |
| MflI | RGATCY | 4 cut(s) | 59, 259, 621, 1031 |
| MhlI | GDGCHC | 3 cut(s) | 687, 1085, 1207 |
| MlyI | GAGTC | 6 cut(s) | 133, 305, 476, 584, 614, 1784 |
| MmeI | TCCRAC | 6 cut(s) | 210, 511, 813, 1119, 1308, 1344 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1726 |
| MseI | TTAA | 7 cut(s) | 855, 900, 1425, 1455, 1625, 1634, 1820 |
| MslI | CAYNNNNRTG | 2 cut(s) | 740, 773 |
| MspA1I | CMGCKG | 3 cut(s) | 1049, 1582, 1676 |
| MspR9I | CCNGG | 5 cut(s) | 93, 518, 713, 1064, 1555 |
| MunI | CAATTG | 2 cut(s) | 746, 1025 |
| Mva1269I | GAATGC | 1 cut(s) | 698 |
| MvaI | CCWGG | 5 cut(s) | 93, 518, 713, 1064, 1555 |
| NcoI | CCATGG | 1 cut(s) | 801 |
| NdeI | CATATG | 2 cut(s) | 613, 741 |
| NlaIII | CATG | 6 cut(s) | 358, 465, 602, 805, 1687, 1783 |
| NlaIV | GGNNCC | 1 cut(s) | 1061 |
| NmuCI | GTSAC | 3 cut(s) | 177, 297, 1570 |
| NspI | RCATGY | 1 cut(s) | 602 |
| PaeI | GCATGC | 1 cut(s) | 602 |
| PaeR7I | CTCGAG | 1 cut(s) | 849 |
| PctI | GAATGC | 1 cut(s) | 698 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1726 |
| PfeI | GAWTC | 7 cut(s) | 107, 374, 506, 701, 707, 806, 1298 |
| PflFI | GACNNNGTC | 1 cut(s) | 482 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 631 |
| PleI | GAGTC | 6 cut(s) | 133, 304, 475, 583, 613, 1784 |
| PpsI | GAGTC | 6 cut(s) | 133, 304, 475, 583, 613, 1784 |
| PshBI | ATTAAT | 1 cut(s) | 900 |
| Psp124BI | GAGCTC | 1 cut(s) | 687 |
| Psp6I | CCWGG | 5 cut(s) | 91, 516, 711, 1062, 1553 |
| PspEI | GGTNACC | 1 cut(s) | 177 |
| PspFI | CCCAGC | 1 cut(s) | 315 |
| PspGI | CCWGG | 5 cut(s) | 91, 516, 711, 1062, 1553 |
| PspN4I | GGNNCC | 1 cut(s) | 1061 |
| PspPI | GGNCC | 3 cut(s) | 277, 715, 1849 |
| PspXI | VCTCGAGB | 1 cut(s) | 849 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 420, 452 |
| PstI | CTGCAG | 2 cut(s) | 934, 1498 |
| PstNI | CAGNNNCTG | 4 cut(s) | 104, 197, 1484, 1679 |
| PsuI | RGATCY | 4 cut(s) | 59, 259, 621, 1031 |
| PsyI | GACNNNGTC | 1 cut(s) | 482 |
| PvuII | CAGCTG | 3 cut(s) | 1049, 1582, 1676 |
| RsaI | GTAC | 6 cut(s) | 195, 1061, 1106, 1240, 1542, 1552 |
| RsaNI | GTAC | 6 cut(s) | 194, 1060, 1105, 1239, 1541, 1551 |
| RseI | CAYNNNNRTG | 2 cut(s) | 740, 773 |
| SacI | GAGCTC | 1 cut(s) | 687 |
| SaqAI | TTAA | 7 cut(s) | 855, 900, 1425, 1455, 1625, 1634, 1820 |
| Sau96I | GGNCC | 3 cut(s) | 277, 715, 1849 |
| SchI | GAGTC | 6 cut(s) | 133, 305, 476, 584, 614, 1784 |
| ScrFI | CCNGG | 5 cut(s) | 93, 518, 713, 1064, 1555 |
| SduI | GDGCHC | 3 cut(s) | 687, 1085, 1207 |
| SfaNI | GCATC | 4 cut(s) | 403, 574, 1033, 1453 |
| SfcI | CTRYAG | 2 cut(s) | 930, 1494 |
| Sfr274I | CTCGAG | 1 cut(s) | 849 |
| SinI | GGWCC | 1 cut(s) | 277 |
| SlaI | CTCGAG | 1 cut(s) | 849 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 740, 773 |
| SmlI | CTYRAG | 4 cut(s) | 849, 1198, 1412, 1756 |
| SmoI | CTYRAG | 4 cut(s) | 849, 1198, 1412, 1756 |
| SphI | GCATGC | 1 cut(s) | 602 |
| SsiI | CCGC | 3 cut(s) | 756, 1563, 1646 |
| SspMI | CTAG | 2 cut(s) | 719, 1858 |
| SstI | GAGCTC | 1 cut(s) | 687 |
| StyD4I | CCNGG | 5 cut(s) | 91, 516, 711, 1062, 1553 |
| StyI | CCWWGG | 2 cut(s) | 630, 801 |
| TaaI | ACNGT | 3 cut(s) | 441, 984, 1336 |
| TaqI | TCGA | 7 cut(s) | 5, 76, 110, 561, 785, 850, 1716 |
| TatI | WGTACW | 2 cut(s) | 1238, 1540 |
| TauI | GCSGC | 2 cut(s) | 758, 1565 |
| TfiI | GAWTC | 7 cut(s) | 107, 374, 506, 701, 707, 806, 1298 |
| Tru1I | TTAA | 7 cut(s) | 855, 900, 1425, 1455, 1625, 1634, 1820 |
| Tru9I | TTAA | 7 cut(s) | 855, 900, 1425, 1455, 1625, 1634, 1820 |
| TscAI | CASTG | 5 cut(s) | 306, 867, 1126, 1317, 1658 |
| TseFI | GTSAC | 3 cut(s) | 177, 297, 1570 |
| Tsp45I | GTSAC | 3 cut(s) | 177, 297, 1570 |
| TspGWI | ACGGA | 2 cut(s) | 924, 1454 |
| TspRI | CASTG | 5 cut(s) | 306, 867, 1126, 1317, 1658 |
| Tth111I | GACNNNGTC | 1 cut(s) | 482 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 631 |
| VpaK11BI | GGWCC | 1 cut(s) | 277 |
| VspI | ATTAAT | 1 cut(s) | 900 |
| XapI | RAATTY | 3 cut(s) | 537, 1000, 1603 |
| XceI | RCATGY | 1 cut(s) | 602 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1309 |
| XhoI | CTCGAG | 1 cut(s) | 849 |
| XmiI | GTMKAC | 1 cut(s) | 436 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1726 |
| XspI | CTAG | 2 cut(s) | 719, 1858 |