Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001479

Physical Location & Seq

Genomic Coordinates Forward (+)

7556557 .. 7559333

Gene Structure 2777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0096800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGAGTCTTCCCTCCAGCTCCCTCTACTTTGCTGTCACCAAATTTCAACAATTAGGGTTTCCCAAATCCAATCACAAACCACAAAGCCAACAAGATCCTCACTTTTCTACCCCAAATTGCTTGCACCCATCAAATTCCACTAATTCGAACTCCCCATCTCTTAGAAATGCGAGGTCTTTGTGCCTGAGCAGAAGGCCCAGTCAGAGCCCATCAGAGGCTTCTGGGTTTCCAACCCAATTAGGGTTTAAGGAGGAAAGCGAAAACCTTTTCGACCTGGAATCGAAACCAAGTGATGAAACGCAAAATGGGATTGGACCCAGTAAAGAAGCCAATGCTACTTCATTGGGTTCAGATTTTCTGGAACCAAAGAGTAGTGAAGGCGAGGTTTTGGAGAAGGAGGAGGGATTGAAGCGCGTTGATGGCAATGTTGGGTTGAAGAAAGTGAGGCAGCTGATGAAGAGGTCGAGTATTCTGGCTAAGCAAGTGTTCAGTATTGAAAGTGCTCTCAGCTTGGGCTTTGTTTCACAGCTTTGGGTCAACACTACTTCTTGGATGGTAATGTTTGTAGAAGTGAGGAGAAACTTGCTTTCAGGGGAGTGTGAACGTTTTCTTCTGGAGGATGTTATCCAGGTTGGTGATGTTGTGCTTGTGGAGGATGAGAGTGTGATTGAGAATGAATTCAAAATGGTTGGATTGGAAACATTGGTAGGATACGAAGTTGTAACACCAGGTCGACGAACTATTGGAAAGGTGCGGGGATATAGTTTTAACATCAATTCAGGGGCTGTTGAATCACTTGAGCTTGATTCATTTGGCATTGCAATTATCCCGTCAAGTTTGGTGAGTACATATGCTTTGTTTGTCGAGGATGTGCTTGAAGTTGTATCTGATGCAGTCATTGTGCATGAAGCTGCAGCGTCTCGCATATACAGGCTAACCAAGGGTTTTTTGGACAACCAAAACGCTGCAACTTCCATAGATGACATTGAAGAGTACTCTGACTTTGAAAGACCTGTAGAATCTGATAAGCGCTCAAGAAGAAGTTCTGGTAACCAGAAGTTCCGTTCTCGGAAAAGCAAGACCGATGATGAGTGGGAGCCGGAGCTCCCAATGGATTACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009507 GO:0009536 GO:0009664 GO:0009987 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

No domains found.

Protein Analysis

374

Amino Acids

41.64

Weight (kDa)

4.97

Isoelectric Point (pI)

59.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37080 AT2G37080 AT2G37080 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350
fragaria_vesca	FvH4_6g15372 FvH4_6g15372 FvH4_6g15372 FvH4_6g15372
malus_domestica	MD04G1104300.v1.1 MD12G1124200.v1.1
prunus_persica	Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1
pyrus_communis	pycom04g09910 pycom12g12260
rosa_chinensis	RchiOBHm_Chr2g0099711 RchiOBHm_Chr2g0125251 RchiOBHm_Chr3g0468851
rosa_laevigata	RLG00000024406
rosa_multiflora	Rmu_sc0001639.1_g000019
rosa_roxburghii	Rroxscaffold_4G00315970 Rroxscaffold_6G00412520
rosa_rugosa	Rorug03G0096800 Rorug03G0096900 Rorug06G0151400
rosa_samantha	Rh2BG246400 Rh2CG237000 Rh3AG146600 Rh3AG146700 Rh3BG169100 Rh3BG169200 Rh3DG205900 Rh4AG101700 Rh4CG109700 Rh4DG262400 Rh7BG297800 Rh7DG377800
rosa_wichuraiana	Rw2G026840 Rw3G013790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	733
AccII	CGCG	1 cut(s)	414
AciI	CCGC	1 cut(s)	754
AclI	AACGTT	1 cut(s)	604
AclWI	GGATC	1 cut(s)	89
AcsI	RAATTY	3 cut(s)	41, 133, 677
AfaI	GTAC	2 cut(s)	847, 995
AfeI	AGCGCT	1 cut(s)	1031
AfiI	CCNNNNNNNGG	2 cut(s)	214, 240
AgsI	TTSAA	9 cut(s)	47, 409, 436, 497, 682, 791, 878, 989, 1007
AjnI	CCWGG	3 cut(s)	273, 627, 727
AluBI	AGCT	7 cut(s)	18, 451, 510, 529, 802, 911, 1105
AluI	AGCT	7 cut(s)	18, 451, 510, 529, 802, 911, 1105
Alw21I	GWGCWC	2 cut(s)	505, 1107
Alw26I	GTCTC	1 cut(s)	924
AlwI	GGATC	1 cut(s)	89
AlwNI	CAGNNNCTG	1 cut(s)	785
Aor51HI	AGCGCT	1 cut(s)	1031
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	4 cut(s)	448, 911, 914, 965
ApoI	RAATTY	3 cut(s)	41, 133, 677
Asp700I	GAANNNNTTC	3 cut(s)	606, 677, 1042
AspLEI	GCGC	2 cut(s)	414, 1032
AspS9I	GGNCC	2 cut(s)	195, 314
AsuHPI	GGTGA	3 cut(s)	28, 647, 853
AsuII	TTCGAA	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	314
BanII	GRGCYC	2 cut(s)	209, 1107
Bbv12I	GWGCWC	2 cut(s)	505, 1107
BbvI	GCAGC	4 cut(s)	460, 898, 926, 952
BccI	CCATC	5 cut(s)	136, 163, 217, 413, 547
BciT130I	CCWGG	3 cut(s)	275, 629, 729
BciVI	GTATCC	1 cut(s)	704
BcoDI	GTCTC	1 cut(s)	924
BfmI	CTRYAG	2 cut(s)	912, 1014
BfoI	RGCGCY	1 cut(s)	1033
BfuI	GTATCC	1 cut(s)	704
BisI	GCNGC	4 cut(s)	449, 912, 915, 966
BlpI	GCTNAGC	1 cut(s)	477
BlsI	GCNGC	4 cut(s)	450, 913, 916, 967
BmcAI	AGTACT	1 cut(s)	995
Bme1390I	CCNGG	3 cut(s)	275, 629, 729
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	2 cut(s)	195, 314
BmiI	GGNNCC	3 cut(s)	316, 363, 1098
BmrFI	CCNGG	3 cut(s)	275, 629, 729
BmrI	ACTGGG	2 cut(s)	192, 312
BmsI	GCATC	1 cut(s)	880
BmuI	ACTGGG	2 cut(s)	192, 312
BpmI	CTGGAG	1 cut(s)	635
Bpu10I	CCTNAGC	1 cut(s)	185
Bpu1102I	GCTNAGC	1 cut(s)	477
Bpu14I	TTCGAA	1 cut(s)	146
BpuEI	CTTGAG	2 cut(s)	818, 1018
BsaJI	CCNNGG	1 cut(s)	939
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 240
Bse1I	ACTGG	2 cut(s)	198, 318
Bse3DI	GCAATG	2 cut(s)	430, 816
BseBI	CCWGG	3 cut(s)	275, 629, 729
BseDI	CCNNGG	1 cut(s)	939
BseGI	GGATG	4 cut(s)	558, 625, 661, 874
BseLI	CCNNNNNNNGG	2 cut(s)	214, 240
BseMI	GCAATG	2 cut(s)	430, 816
BseMII	CTCAG	2 cut(s)	176, 520
BseNI	ACTGG	2 cut(s)	198, 318
BseRI	GAGGAG	2 cut(s)	413, 589
BseXI	GCAGC	4 cut(s)	460, 898, 926, 952
Bsh1236I	CGCG	1 cut(s)	414
BshFI	GGCC	1 cut(s)	196
BsiHKAI	GWGCWC	2 cut(s)	505, 1107
BsiSI	CCGG	1 cut(s)	1100
BslI	CCNNNNNNNGG	2 cut(s)	214, 240
BsmAI	GTCTC	1 cut(s)	924
BsmBI	CGTCTC	1 cut(s)	924
BsnI	GGCC	1 cut(s)	196
Bsp119I	TTCGAA	1 cut(s)	146
Bsp1286I	GDGCHC	3 cut(s)	209, 505, 1107
Bsp143I	GATC	1 cut(s)	94
Bsp1720I	GCTNAGC	1 cut(s)	477
BspACI	CCGC	1 cut(s)	754
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	2 cut(s)	177, 519
BspFNI	CGCG	1 cut(s)	414
BspLI	GGNNCC	3 cut(s)	316, 363, 1098
BspMAI	CTGCAG	1 cut(s)	916
BspPI	GGATC	1 cut(s)	89
BspT104I	TTCGAA	1 cut(s)	146
BsrDI	GCAATG	2 cut(s)	430, 816
BsrI	ACTGG	2 cut(s)	198, 318
BssECI	CCNNGG	1 cut(s)	939
BssMI	GATC	1 cut(s)	94
BssT1I	CCWWGG	1 cut(s)	939
Bst2UI	CCWGG	3 cut(s)	275, 629, 729
Bst6I	CTCTTC	2 cut(s)	452, 984
BstBI	TTCGAA	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	4 cut(s)	161, 185, 477, 506
BstEII	GGTNACC	1 cut(s)	1049
BstF5I	GGATG	4 cut(s)	558, 625, 661, 874
BstFNI	CGCG	1 cut(s)	414
BstH2I	RGCGCY	1 cut(s)	1033
BstHHI	GCGC	2 cut(s)	414, 1032
BstKTI	GATC	1 cut(s)	97
BstMAI	GTCTC	1 cut(s)	924
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	1 cut(s)	420
BstNI	CCWGG	3 cut(s)	275, 629, 729
BstPI	GGTNACC	1 cut(s)	1049
BstSCI	CCNGG	3 cut(s)	273, 627, 727
BstSFI	CTRYAG	2 cut(s)	912, 1014
BstUI	CGCG	1 cut(s)	414
BstV1I	GCAGC	4 cut(s)	460, 898, 926, 952
BstX2I	RGATCY	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	94
BsuI	GTATCC	1 cut(s)	704
BsuRI	GGCC	1 cut(s)	196
BtsCI	GGATG	4 cut(s)	558, 625, 661, 874
Cac8I	GCNNGC	1 cut(s)	122
CaiI	CAGNNNCTG	1 cut(s)	785
CfoI	GCGC	2 cut(s)	414, 1032
Cfr13I	GGNCC	2 cut(s)	195, 314
CseI	GACGC	1 cut(s)	906
CsiI	ACCWGGT	1 cut(s)	727
Csp6I	GTAC	2 cut(s)	846, 994
CviAII	CATG	1 cut(s)	905
CviQI	GTAC	2 cut(s)	846, 994
DdeI	CTNAG	4 cut(s)	161, 185, 477, 506
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
Eam1104I	CTCTTC	2 cut(s)	452, 984
EarI	CTCTTC	2 cut(s)	452, 984
Ecl136II	GAGCTC	1 cut(s)	1105
Eco130I	CCWWGG	1 cut(s)	939
Eco24I	GRGCYC	2 cut(s)	209, 1107
Eco47I	GGWCC	1 cut(s)	314
Eco47III	AGCGCT	1 cut(s)	1031
Eco53kI	GAGCTC	1 cut(s)	1105
Eco91I	GGTNACC	1 cut(s)	1049
EcoICRI	GAGCTC	1 cut(s)	1105
EcoO65I	GGTNACC	1 cut(s)	1049
EcoRI	GAATTC	1 cut(s)	677
EcoRII	CCWGG	3 cut(s)	273, 627, 727
EcoT14I	CCWWGG	1 cut(s)	939
EcoT38I	GRGCYC	2 cut(s)	209, 1107
ErhI	CCWWGG	1 cut(s)	939
Esp3I	CGTCTC	1 cut(s)	924
FaeI	CATG	1 cut(s)	908
FaiI	YATR	7 cut(s)	762, 850, 852, 906, 926, 928, 977
FatI	CATG	1 cut(s)	904
FauI	CCCGC	1 cut(s)	747
FauNDI	CATATG	1 cut(s)	850
FblI	GTMKAC	1 cut(s)	733
Fnu4HI	GCNGC	4 cut(s)	449, 912, 915, 966
FokI	GGATG	4 cut(s)	565, 632, 668, 881
FriOI	GRGCYC	2 cut(s)	209, 1107
Fsp4HI	GCNGC	4 cut(s)	449, 912, 915, 966
GlaI	GCGC	2 cut(s)	413, 1031
GluI	GCNGC	4 cut(s)	449, 912, 915, 966
GsuI	CTGGAG	1 cut(s)	635
HaeII	RGCGCY	1 cut(s)	1033
HaeIII	GGCC	1 cut(s)	196
HapII	CCGG	1 cut(s)	1100
HgaI	GACGC	1 cut(s)	906
HhaI	GCGC	2 cut(s)	414, 1032
Hin1II	CATG	1 cut(s)	908
Hin6I	GCGC	2 cut(s)	412, 1030
HinP1I	GCGC	2 cut(s)	412, 1030
HincII	GTYRAC	2 cut(s)	538, 734
HindII	GTYRAC	2 cut(s)	538, 734
HinfI	GANTC	5 cut(s)	4, 278, 791, 806, 1019
HpaII	CCGG	1 cut(s)	1100
HphI	GGTGA	3 cut(s)	28, 647, 853
Hpy166II	GTNNAC	3 cut(s)	538, 602, 734
Hpy188I	TCNGA	8 cut(s)	204, 214, 352, 889, 1000, 1024, 1071, 1124
Hpy188III	TCNNGA	3 cut(s)	359, 614, 1035
Hpy8I	GTNNAC	3 cut(s)	538, 602, 734
Hpy99I	CGWCG	1 cut(s)	738
HpyAV	CCTTC	3 cut(s)	186, 371, 388
HpyCH4IV	ACGT	1 cut(s)	604
HpyCH4V	TGCA	6 cut(s)	124, 821, 893, 904, 914, 968
HpyF10VI	GCNNNNNNNGC	1 cut(s)	420
HpyF3I	CTNAG	4 cut(s)	161, 185, 477, 506
HpySE526I	ACGT	1 cut(s)	604
Hsp92II	CATG	1 cut(s)	908
HspAI	GCGC	2 cut(s)	412, 1030
Kzo9I	GATC	1 cut(s)	94
LmnI	GCTCC	4 cut(s)	23, 1096, 1102, 1110
Lsp1109I	GCAGC	4 cut(s)	460, 898, 926, 952
LweI	GCATC	1 cut(s)	880
MabI	ACCWGGT	1 cut(s)	727
MaeII	ACGT	1 cut(s)	604
MaeIII	GTNAC	3 cut(s)	34, 721, 1049
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	5 cut(s)	448, 469, 602, 1001, 1050
MflI	RGATCY	1 cut(s)	94
MhlI	GDGCHC	3 cut(s)	209, 505, 1107
MluCI	AATT	9 cut(s)	41, 50, 115, 133, 142, 236, 677, 775, 822
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	2 cut(s)	254, 670
MroXI	GAANNNNTTC	3 cut(s)	606, 677, 1042
MseI	TTAA	2 cut(s)	246, 768
MspA1I	CMGCKG	1 cut(s)	451
MspI	CCGG	1 cut(s)	1100
MspR9I	CCNGG	3 cut(s)	275, 629, 729
MvaI	CCWGG	3 cut(s)	275, 629, 729
MvnI	CGCG	1 cut(s)	414
MwoI	GCNNNNNNNGC	1 cut(s)	420
NdeI	CATATG	1 cut(s)	850
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	1 cut(s)	908
NlaIV	GGNNCC	3 cut(s)	316, 363, 1098
NmuCI	GTSAC	1 cut(s)	34
NspV	TTCGAA	1 cut(s)	146
PdmI	GAANNNNTTC	3 cut(s)	606, 677, 1042
PfeI	GAWTC	4 cut(s)	278, 791, 806, 1019
PkrI	GCNGC	4 cut(s)	450, 913, 916, 967
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	1107
Psp1406I	AACGTT	1 cut(s)	604
Psp6I	CCWGG	3 cut(s)	273, 627, 727
PspEI	GGTNACC	1 cut(s)	1049
PspGI	CCWGG	3 cut(s)	273, 627, 727
PspN4I	GGNNCC	3 cut(s)	316, 363, 1098
PspPI	GGNCC	2 cut(s)	195, 314
PstI	CTGCAG	1 cut(s)	916
PstNI	CAGNNNCTG	1 cut(s)	785
PsuI	RGATCY	1 cut(s)	94
PvuII	CAGCTG	1 cut(s)	451
RsaI	GTAC	2 cut(s)	847, 995
RsaNI	GTAC	2 cut(s)	846, 994
SacI	GAGCTC	1 cut(s)	1107
SalI	GTCGAC	1 cut(s)	732
SaqAI	TTAA	2 cut(s)	246, 768
SatI	GCNGC	4 cut(s)	449, 912, 915, 966
Sau3AI	GATC	1 cut(s)	94
Sau96I	GGNCC	2 cut(s)	195, 314
ScaI	AGTACT	1 cut(s)	995
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	3 cut(s)	275, 629, 729
SduI	GDGCHC	3 cut(s)	209, 505, 1107
SexAI	ACCWGGT	1 cut(s)	727
SfaNI	GCATC	1 cut(s)	880
SfcI	CTRYAG	2 cut(s)	912, 1014
SfuI	TTCGAA	1 cut(s)	146
SinI	GGWCC	1 cut(s)	314
SmlI	CTYRAG	2 cut(s)	797, 1033
SmoI	CTYRAG	2 cut(s)	797, 1033
Sse9I	AATT	9 cut(s)	41, 50, 115, 133, 142, 236, 677, 775, 822
SsiI	CCGC	1 cut(s)	754
SstI	GAGCTC	1 cut(s)	1107
StyD4I	CCNGG	3 cut(s)	273, 627, 727
StyI	CCWWGG	1 cut(s)	939
TaiI	ACGT	1 cut(s)	607
TaqI	TCGA	6 cut(s)	146, 270, 281, 464, 733, 864
TaqII	GACCGA	1 cut(s)	1097
TasI	AATT	9 cut(s)	41, 50, 115, 133, 142, 236, 677, 775, 822
TatI	WGTACW	2 cut(s)	845, 993
TfiI	GAWTC	4 cut(s)	278, 791, 806, 1019
Tru1I	TTAA	2 cut(s)	246, 768
Tru9I	TTAA	2 cut(s)	246, 768
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	4 cut(s)	448, 911, 914, 965
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	6 cut(s)	309, 330, 470, 690, 798, 921
TspGWI	ACGGA	1 cut(s)	1052
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	3 cut(s)	41, 133, 677
XcmI	CCANNNNNNNNNTGG	1 cut(s)	946
XmiI	GTMKAC	1 cut(s)	733
XmnI	GAANNNNTTC	3 cut(s)	606, 677, 1042
ZrmI	AGTACT	1 cut(s)	995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.