Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001479

Physical Location & Seq

Genomic Coordinates Forward (+)

18781943 .. 18786706

Gene Structure 4764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG205900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

ATGTCTGCGAAGCTTGAAGAGTCTGAACAGCAACTGCAGGAAATTTCTTCTTCTGAAGATGCTCGTATTCAAGAGCTCCGTCAACTTTCTCAGGATCGAGATAGAGCATGGGAATCTGAACTTCAGGCTGTTCAACAGCAGCGTTCGATGGATTCCACTGCCTTGGCTTCTGCCATTAATGAAATTCAGAAGCTAAAGGGTCAGGTGGAAATGGTGGCGGACTCTGAAGCCACCCAGAGGAGGCATGCAGAGTCAGCAGACGCTGAGATCCAGACCTTGAGAATGGAACTTTCTGAAACTCTCTCCCTGGTTGAGAAATTGAAAACTGAGCTAAGTGATTGCAAAGAATCTGAAGCCAGGGCCGTAGAACTTATAGACAGTACTCGTATGCAATTGGAGAGGGCAAATGCAACCATAGAATCGCTCCAATTGGATAGGACCAAAGGGTCAGGGTACTGCAACTCTTTATCATTGGAGTTGGAGCAGTCTAAAGATCGCATTAAATCACTGGAGAGTCTTGTGAGCAAGCTACAGGCAGAAGTTGCTATTAGTAACAGCAATCAATTGGTAAACTCTTCGGGCAATTCAAAACTTTCTCAGGGAGATGACCAAAATGAAGAAACAGTACAGTTAAAAGAAGAGCTGAATTGTGTGAAATCTGAAGTGAGTCAATTGAGGTCTGCATTAGAAGCGGCTGAGATGAGGTACCAAGAAGAATATATTCAGAGCACGCTGCAGATTAGAAGTGCATATGATGAAGTTGAATCTACAAAATCTGAATCATGTCAGAGGGAAGCTGAATTGGCATCAGAACTGAAGCAAGCAAGGGCTCATGTTGAAGACTTGAGCACTCAGCTGATGGATAAAGAAAATCAATTGCAGAGTATATCAGAGGAAAATAACAGGTTGAGCTTGCAAATTGAGAAAAATCTATCAAGTGAAGGGGAATCTGAACTGGCAATGGAGCTGAAGAAGTCGGAAACTGCAGTGGTAGAGTTGAAGGCCAGTTTGATGGATAAGGAGACAGAATTGCAGAACATCGCTGAGGAAAATGAAATGCTGAAGATTGAACTTAAAAACAAGGAAATGGAGAAGAACAATGTCAATGACAACGCTGTTATTTCAGCTGAAGCAACAGGGGAGGCAGAGCGAGAGGCTGTAATAAAGGTTGGCCATTTAACTCAAGAAGCTGATAAAAGTACACACAGAGCAGCACGAGCGACTGAGCAGCTGGATGCAGCACAGGCTGCAAATTCTGAATTGGAGGCTGAGTTAAGGAGGTTAAAGGTGCAGTCAGATCAGTGGAGGAAGGCCGCTGAGGCGGCTGCTGCTATTCTTTCAGCAGGAAACAACGGGAAGTTTGTGGAGAGAACAGGTTCTCTTGAAAGCCACTACAATCCCTTGAGTTCACCTTATTCAGAAGACCTGGACGATGACTCGCCAAAGAAGAAAAATGTGACCATGTTGAAGAAGATTGGTGTTCTGTGGAAGAAGGGCCAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009507 GO:0009536 GO:0009664 GO:0009987 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

No domains found.

Protein Analysis

501

Amino Acids

56.02

Weight (kDa)

4.75

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37080 AT2G37080 AT2G37080 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350
fragaria_vesca	FvH4_6g15372 FvH4_6g15372 FvH4_6g15372 FvH4_6g15372
malus_domestica	MD04G1104300.v1.1 MD12G1124200.v1.1
prunus_persica	Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1
pyrus_communis	pycom04g09910 pycom12g12260
rosa_chinensis	RchiOBHm_Chr2g0099711 RchiOBHm_Chr2g0125251 RchiOBHm_Chr3g0468851
rosa_laevigata	RLG00000024406
rosa_multiflora	Rmu_sc0001639.1_g000019
rosa_roxburghii	Rroxscaffold_4G00315970 Rroxscaffold_6G00412520
rosa_rugosa	Rorug03G0096800 Rorug03G0096900 Rorug06G0151400
rosa_samantha	Rh2BG246400 Rh2CG237000 Rh3AG146600 Rh3AG146700 Rh3BG169100 Rh3BG169200 Rh3DG205900 Rh4AG101700 Rh4CG109700 Rh4DG262400 Rh7BG297800 Rh7DG377800
rosa_wichuraiana	Rw2G026840 Rw3G013790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	445
Acc65I	GGTACC	1 cut(s)	705
AccB1I	GGYRCC	1 cut(s)	705
AciI	CCGC	4 cut(s)	218, 692, 1314, 1322
AclWI	GGATC	2 cut(s)	102, 262
AcoI	YGGCCR	1 cut(s)	1171
AcsI	RAATTY	3 cut(s)	42, 183, 1252
AcuI	CTGAAG	9 cut(s)	75, 107, 246, 372, 681, 836, 989, 1082, 1149
AfaI	GTAC	5 cut(s)	382, 455, 627, 707, 1201
AfiI	CCNNNNNNNGG	2 cut(s)	237, 240
AjnI	CCWGG	3 cut(s)	306, 356, 1425
Alw21I	GWGCWC	3 cut(s)	78, 731, 851
Alw26I	GTCTC	1 cut(s)	1016
AlwI	GGATC	2 cut(s)	102, 262
AlwNI	CAGNNNCTG	2 cut(s)	34, 263
AoxI	GGCC	5 cut(s)	360, 1002, 1171, 1311, 1495
ApeKI	GCWGC	8 cut(s)	139, 733, 1211, 1228, 1238, 1247, 1325, 1328
ApoI	RAATTY	3 cut(s)	42, 183, 1252
AseI	ATTAAT	1 cut(s)	177
Asp700I	GAANNNNTTC	2 cut(s)	720, 1375
Asp718I	GGTACC	1 cut(s)	705
AspS9I	GGNCC	3 cut(s)	360, 438, 1495
AsuHPI	GGTGA	1 cut(s)	1401
AvaII	GGWCC	1 cut(s)	438
BalI	TGGCCA	1 cut(s)	1173
BanI	GGYRCC	1 cut(s)	705
BanII	GRGCYC	2 cut(s)	78, 832
BarI	GAAGNNNNNNTAC	2 cut(s)	609, 641
BauI	CACGAG	1 cut(s)	1215
BbsI	GAAGAC	2 cut(s)	846, 1428
Bbv12I	GWGCWC	3 cut(s)	78, 731, 851
BbvCI	CCTCAGC	2 cut(s)	1044, 1317
BbvI	GCAGC	8 cut(s)	151, 720, 1223, 1234, 1240, 1250, 1312, 1315
BccI	CCATC	3 cut(s)	142, 853, 1006
BceAI	ACGGC	1 cut(s)	347
BciT130I	CCWGG	3 cut(s)	308, 358, 1427
BcoDI	GTCTC	1 cut(s)	1016
BfmI	CTRYAG	4 cut(s)	35, 530, 734, 984
BglI	GCCNNNNNGGC	1 cut(s)	1319
BmcAI	AGTACT	1 cut(s)	382
Bme1390I	CCNGG	3 cut(s)	308, 358, 1427
Bme18I	GGWCC	1 cut(s)	438
BmgT120I	GGNCC	3 cut(s)	360, 438, 1495
BmiI	GGNNCC	1 cut(s)	707
BmrFI	CCNGG	3 cut(s)	308, 358, 1427
BmsI	GCATC	3 cut(s)	49, 815, 1225
BpiI	GAAGAC	2 cut(s)	846, 1428
BpmI	CTGGAG	1 cut(s)	530
Bpu10I	CCTNAGC	2 cut(s)	1044, 1317
BpuEI	CTTGAG	4 cut(s)	298, 865, 1167, 1423
BsaJI	CCNNGG	3 cut(s)	162, 306, 357
BsaXI	ACNNNNNCTCC	2 cut(s)	1256, 1286
Bsc4I	CCNNNNNNNGG	2 cut(s)	237, 240
Bse1I	ACTGG	3 cut(s)	513, 960, 1005
Bse3DI	GCAATG	1 cut(s)	966
BseBI	CCWGG	3 cut(s)	308, 358, 1427
BseDI	CCNNGG	3 cut(s)	162, 306, 357
BseGI	GGATG	1 cut(s)	1240
BseLI	CCNNNNNNNGG	2 cut(s)	237, 240
BseMI	GCAATG	1 cut(s)	966
BseNI	ACTGG	3 cut(s)	513, 960, 1005
BseRI	GAGGAG	1 cut(s)	253
BseXI	GCAGC	8 cut(s)	151, 720, 1223, 1234, 1240, 1250, 1312, 1315
BsgI	GTGCAG	1 cut(s)	1310
BshFI	GGCC	5 cut(s)	362, 1004, 1173, 1313, 1497
BshNI	GGYRCC	1 cut(s)	705
BsiHKAI	GWGCWC	3 cut(s)	78, 731, 851
BslI	CCNNNNNNNGG	2 cut(s)	237, 240
BsmAI	GTCTC	1 cut(s)	1016
BsnI	GGCC	5 cut(s)	362, 1004, 1173, 1313, 1497
Bsp1286I	GDGCHC	4 cut(s)	78, 731, 832, 851
Bsp143I	GATC	4 cut(s)	94, 267, 493, 1297
BspACI	CCGC	4 cut(s)	218, 692, 1314, 1322
BspANI	GGCC	5 cut(s)	362, 1004, 1173, 1313, 1497
BspLI	GGNNCC	1 cut(s)	707
BspMAI	CTGCAG	3 cut(s)	39, 738, 988
BspPI	GGATC	2 cut(s)	102, 262
BspQI	GCTCTTC	1 cut(s)	633
BspT107I	GGYRCC	1 cut(s)	705
BsrDI	GCAATG	1 cut(s)	966
BsrI	ACTGG	3 cut(s)	513, 960, 1005
BssECI	CCNNGG	3 cut(s)	162, 306, 357
BssMI	GATC	4 cut(s)	94, 267, 493, 1297
BssSI	CACGAG	1 cut(s)	1215
BssT1I	CCWWGG	1 cut(s)	162
Bst2BI	CACGAG	1 cut(s)	1215
Bst2UI	CCWGG	3 cut(s)	308, 358, 1427
Bst4CI	ACNGT	3 cut(s)	380, 625, 630
Bst6I	CTCTTC	3 cut(s)	12, 580, 633
BstAPI	GCANNNNNTGC	2 cut(s)	542, 1247
BstC8I	GCNNGC	5 cut(s)	246, 527, 731, 822, 914
BstF5I	GGATG	1 cut(s)	1240
BstKTI	GATC	4 cut(s)	97, 270, 496, 1300
BstMAI	GTCTC	1 cut(s)	1016
BstMBI	GATC	4 cut(s)	94, 267, 493, 1297
BstNI	CCWGG	3 cut(s)	308, 358, 1427
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	3 cut(s)	306, 356, 1425
BstSFI	CTRYAG	4 cut(s)	35, 530, 734, 984
BstV1I	GCAGC	8 cut(s)	151, 720, 1223, 1234, 1240, 1250, 1312, 1315
BstV2I	GAAGAC	2 cut(s)	846, 1428
BstX2I	RGATCY	1 cut(s)	267
BstXI	CCANNNNNNTGG	2 cut(s)	163, 1012
BstYI	RGATCY	1 cut(s)	267
BsuRI	GGCC	5 cut(s)	362, 1004, 1173, 1313, 1497
BtgZI	GCGATG	1 cut(s)	1024
BtsCI	GGATG	1 cut(s)	1240
BtsI	GCAGTG	2 cut(s)	156, 993
BtsIMutI	CAGTG	4 cut(s)	156, 506, 993, 1307
Cac8I	GCNNGC	5 cut(s)	246, 527, 731, 822, 914
CaiI	CAGNNNCTG	2 cut(s)	34, 263
Cfr13I	GGNCC	3 cut(s)	360, 438, 1495
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	5 cut(s)	381, 454, 626, 706, 1200
CviAII	CATG	5 cut(s)	108, 245, 783, 833, 1462
CviQI	GTAC	5 cut(s)	381, 454, 626, 706, 1200
DpnI	GATC	4 cut(s)	96, 269, 495, 1299
DpnII	GATC	4 cut(s)	94, 267, 493, 1297
DrdI	GACNNNNNNGTC	1 cut(s)	445
DseDI	GACNNNNNNGTC	1 cut(s)	445
EaeI	YGGCCR	1 cut(s)	1171
Eam1104I	CTCTTC	3 cut(s)	12, 580, 633
EarI	CTCTTC	3 cut(s)	12, 580, 633
EciI	GGCGGA	1 cut(s)	233
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	162
Eco24I	GRGCYC	2 cut(s)	78, 832
Eco47I	GGWCC	1 cut(s)	438
Eco53kI	GAGCTC	1 cut(s)	76
Eco57I	CTGAAG	9 cut(s)	75, 107, 246, 372, 681, 836, 989, 1082, 1149
EcoICRI	GAGCTC	1 cut(s)	76
EcoRII	CCWGG	3 cut(s)	306, 356, 1425
EcoT14I	CCWWGG	1 cut(s)	162
EcoT38I	GRGCYC	2 cut(s)	78, 832
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	5 cut(s)	111, 248, 786, 836, 1465
FatI	CATG	5 cut(s)	107, 244, 782, 832, 1461
FauNDI	CATATG	1 cut(s)	751
FokI	GGATG	1 cut(s)	1247
FriOI	GRGCYC	2 cut(s)	78, 832
GsuI	CTGGAG	1 cut(s)	530
HaeIII	GGCC	5 cut(s)	362, 1004, 1173, 1313, 1497
HgaI	GACGC	1 cut(s)	269
Hin1II	CATG	5 cut(s)	111, 248, 786, 836, 1465
HincII	GTYRAC	1 cut(s)	83
HindII	GTYRAC	1 cut(s)	83
HindIII	AAGCTT	1 cut(s)	11
HphI	GGTGA	1 cut(s)	1401
Hpy166II	GTNNAC	4 cut(s)	83, 571, 1202, 1409
Hpy188III	TCNNGA	6 cut(s)	71, 92, 98, 271, 1184, 1382
Hpy8I	GTNNAC	4 cut(s)	83, 571, 1202, 1409
HpyAV	CCTTC	4 cut(s)	935, 994, 1303, 1486
HpyCH4III	ACNGT	3 cut(s)	380, 625, 630
Hsp92II	CATG	5 cut(s)	111, 248, 786, 836, 1465
KpnI	GGTACC	1 cut(s)	709
Kzo9I	GATC	4 cut(s)	94, 267, 493, 1297
LguI	GCTCTTC	1 cut(s)	633
LmnI	GCTCC	4 cut(s)	81, 429, 481, 964
Lsp1109I	GCAGC	8 cut(s)	151, 720, 1223, 1234, 1240, 1250, 1312, 1315
LweI	GCATC	3 cut(s)	49, 815, 1225
MaeIII	GTNAC	2 cut(s)	551, 1456
MalI	GATC	4 cut(s)	96, 269, 495, 1299
MboI	GATC	4 cut(s)	94, 267, 493, 1297
MfeI	CAATTG	5 cut(s)	392, 428, 563, 671, 875
MflI	RGATCY	1 cut(s)	267
MhlI	GDGCHC	4 cut(s)	78, 731, 832, 851
MlsI	TGGCCA	1 cut(s)	1173
MluNI	TGGCCA	1 cut(s)	1173
MlyI	GAGTC	6 cut(s)	29, 215, 260, 523, 676, 1430
MmeI	TCCRAC	2 cut(s)	459, 957
Mox20I	TGGCCA	1 cut(s)	1173
MroXI	GAANNNNTTC	2 cut(s)	720, 1375
MscI	TGGCCA	1 cut(s)	1173
MseI	TTAA	7 cut(s)	177, 501, 632, 1074, 1178, 1274, 1283
Msp20I	TGGCCA	1 cut(s)	1173
MspA1I	CMGCKG	4 cut(s)	856, 1127, 1231, 1316
MspR9I	CCNGG	3 cut(s)	308, 358, 1427
MunI	CAATTG	5 cut(s)	392, 428, 563, 671, 875
MvaI	CCWGG	3 cut(s)	308, 358, 1427
NdeI	CATATG	1 cut(s)	751
NdeII	GATC	4 cut(s)	94, 267, 493, 1297
NlaIII	CATG	5 cut(s)	111, 248, 786, 836, 1465
NlaIV	GGNNCC	1 cut(s)	707
NmuCI	GTSAC	1 cut(s)	1456
NspI	RCATGY	1 cut(s)	248
PaeI	GCATGC	1 cut(s)	248
PciSI	GCTCTTC	1 cut(s)	633
PdmI	GAANNNNTTC	2 cut(s)	720, 1375
PfeI	GAWTC	7 cut(s)	113, 152, 347, 419, 764, 779, 947
PleI	GAGTC	6 cut(s)	28, 215, 259, 522, 675, 1430
PpsI	GAGTC	6 cut(s)	28, 215, 259, 522, 675, 1430
PshBI	ATTAAT	1 cut(s)	177
Psp124BI	GAGCTC	1 cut(s)	78
Psp6I	CCWGG	3 cut(s)	306, 356, 1425
PspGI	CCWGG	3 cut(s)	306, 356, 1425
PspN4I	GGNNCC	1 cut(s)	707
PspPI	GGNCC	3 cut(s)	360, 438, 1495
PstI	CTGCAG	3 cut(s)	39, 738, 988
PstNI	CAGNNNCTG	2 cut(s)	34, 263
PsuI	RGATCY	1 cut(s)	267
PvuII	CAGCTG	3 cut(s)	856, 1127, 1231
RsaI	GTAC	5 cut(s)	382, 455, 627, 707, 1201
RsaNI	GTAC	5 cut(s)	381, 454, 626, 706, 1200
SacI	GAGCTC	1 cut(s)	78
SapI	GCTCTTC	1 cut(s)	633
SaqAI	TTAA	7 cut(s)	177, 501, 632, 1074, 1178, 1274, 1283
Sau3AI	GATC	4 cut(s)	94, 267, 493, 1297
Sau96I	GGNCC	3 cut(s)	360, 438, 1495
ScaI	AGTACT	1 cut(s)	382
SchI	GAGTC	6 cut(s)	29, 215, 260, 523, 676, 1430
ScrFI	CCNGG	3 cut(s)	308, 358, 1427
SduI	GDGCHC	4 cut(s)	78, 731, 832, 851
SfaNI	GCATC	3 cut(s)	49, 815, 1225
SfcI	CTRYAG	4 cut(s)	35, 530, 734, 984
SinI	GGWCC	1 cut(s)	438
SmlI	CTYRAG	4 cut(s)	277, 844, 1182, 1402
SmoI	CTYRAG	4 cut(s)	277, 844, 1182, 1402
SphI	GCATGC	1 cut(s)	248
SsiI	CCGC	4 cut(s)	218, 692, 1314, 1322
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	3 cut(s)	306, 356, 1425
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	3 cut(s)	380, 625, 630
TaqI	TCGA	2 cut(s)	97, 146
TatI	WGTACW	3 cut(s)	380, 625, 1199
TauI	GCSGC	3 cut(s)	695, 1316, 1325
TfiI	GAWTC	7 cut(s)	113, 152, 347, 419, 764, 779, 947
Tru1I	TTAA	7 cut(s)	177, 501, 632, 1074, 1178, 1274, 1283
Tru9I	TTAA	7 cut(s)	177, 501, 632, 1074, 1178, 1274, 1283
TscAI	CASTG	4 cut(s)	163, 513, 993, 1307
TseFI	GTSAC	1 cut(s)	1456
TseI	GCWGC	8 cut(s)	139, 733, 1211, 1228, 1238, 1247, 1325, 1328
Tsp45I	GTSAC	1 cut(s)	1456
TspDTI	ATGAA	4 cut(s)	195, 630, 771, 1068
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	4 cut(s)	163, 513, 993, 1307
VpaK11BI	GGWCC	1 cut(s)	438
VspI	ATTAAT	1 cut(s)	177
XapI	RAATTY	3 cut(s)	42, 183, 1252
XceI	RCATGY	1 cut(s)	248
XmnI	GAANNNNTTC	2 cut(s)	720, 1375
ZrmI	AGTACT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.