Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006471

Physical Location & Seq

Genomic Coordinates Reverse (-)

20223034 .. 20225523

Gene Structure 2490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G54640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCGATTGCTTTCAAATCCGGCGTCTTCTTCCTCCAATCCCCAAAATCTCAAATTGGATTCCGCCATTCTTCTCCTCCTGATTCATCGCTTTCTTTCAAGAGATTCACTCCCATGGCTTCTCTCTCCACCTCTTCTCCTACTCTCGGTCTCGCTGATACTTTCACACAGCTCAAAAAACAAGGCAAAGTAGCATTCATACCATATATCACAGCTGGTGATCCGGATCTCTCTACTACTGCTGAAGCATTGAAAGTTCTTGATGCTTGTGGTTCTGACATAATCGAATTGGGTGTTCCTTACTCTGACCCTTTAGCTGATGGACCTGTTATTCAGGCTGCGGCAACAAGGTCGTTGGAGAGGGGAACAAACCTCGATAGCATCCTTGAGATGTTGGATAAGGTTGTTCCACAAATATCTTGTCCGATTTCGTTGTTCACGTATTACAACCCGATTCTTAAACGTGGGTTGGGGAAGTTCATGTCCAGCATCAGAGCTGTTGGTGTACAGGGACTTGTGGTTCCCGATGTTCCTCTTGAGGAAACTGAGATGCTGAGAAAAGAAGCCCTCAACAACGACATTGAGCTGGTCCTACTCACTACACCAACCACACCAACAGAGCGAATGAAGCTAATTGTTGATGCGTCAGAAGGATTTATTTACCTTGTGAGCTCAATTGGAGTGACTGGTGCACGATCATCTGTAAGCGGAAAGGTTCAGTCGCTCTTGAAGGATATCAAAGAGGCGACAGACAAGCCGGTGGCAGTCGGTTTTGGAATATCAAAGCCGGAGCATGTGAAACAGATAGCTGGATGGGGAGCTGATGGAGTGATCGTAGGCAGTGCAATGGTAAAGCTATTGGGTGATGCAAAGTCGCCAACTGAAGGACTTAAGGAGCTTGAGAAACTAACCAAGTCTCTTAAATCTGCTCTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016830 GO:0016832 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0033984 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

312

Amino Acids

33.2

Weight (kDa)

6.76

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trp_syntA	PF00290	55 - 310	1.2e-96	Tryptophan synthase alpha chain
His_biosynth	PF00977	236 - 285	8.1e-06	Histidine biosynthesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54640
fragaria_vesca	FvH4_2g22570
malus_domestica	MD05G1206300.v1.1 MD10G1193300.v1.1
prunus_persica	Prupe.8G232700_v2.0.a1
pyrus_communis	pycom05g19230 pycom10g16710
rosa_chinensis	RchiOBHm_Chr3g0488871 RchiOBHm_Chr6g0284041 RchiOBHm_Chr6g0289611
rosa_laevigata	RLG00000012288 RLG00000026432
rosa_multiflora	Rmu_co8332575.1_g000001 Rmu_sc0000607.1_g000042 Rmu_sc0001527.1_g000067 Rmu_sc0001850.1_g000026 Rmu_sc0005376.1_g000002
rosa_roxburghii	Rroxscaffold_1G00026080 Rroxscaffold_7G00177810
rosa_rugosa	Rorug06G0205100
rosa_samantha	Rh5AG506400 Rh6BG323300 Rh6CG329700 Rh6DG267800 Rh6DG315100
rosa_wichuraiana	Rw6G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	223
AciI	CCGC	3 cut(s)	64, 341, 708
AclWI	GGATC	2 cut(s)	215, 234
AcuI	CTGAAG	2 cut(s)	264, 903
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	1 cut(s)	507
AfiI	CCNNNNNNNGG	2 cut(s)	146, 884
AflII	CTTAAG	1 cut(s)	890
AgsI	TTSAA	4 cut(s)	16, 100, 253, 730
AloI	GAACNNNNNNTCC	2 cut(s)	504, 536
Alw21I	GWGCWC	2 cut(s)	674, 694
Alw26I	GTCTC	2 cut(s)	155, 921
Alw44I	GTGCAC	1 cut(s)	690
AlwI	GGATC	2 cut(s)	215, 234
Aor13HI	TCCGGA	1 cut(s)	223
ApaLI	GTGCAC	1 cut(s)	690
ApeKI	GCWGC	1 cut(s)	338
ArsI	GACNNNNNNTTYG	4 cut(s)	9, 41, 406, 438
AspS9I	GGNCC	2 cut(s)	323, 589
AsuHPI	GGTGA	2 cut(s)	230, 875
AvaII	GGWCC	2 cut(s)	323, 589
BaeGI	GKGCMC	1 cut(s)	694
BanII	GRGCYC	1 cut(s)	674
BbsI	GAAGAC	1 cut(s)	19
Bbv12I	GWGCWC	2 cut(s)	674, 694
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	3 cut(s)	314, 807, 818
BcgI	CGANNNNNNTGC	2 cut(s)	333, 367
BcoDI	GTCTC	2 cut(s)	155, 921
BfrI	CTTAAG	1 cut(s)	890
BisI	GCNGC	2 cut(s)	339, 342
BlsI	GCNGC	2 cut(s)	340, 343
Bme18I	GGWCC	2 cut(s)	323, 589
BmgT120I	GGNCC	2 cut(s)	323, 589
BmiI	GGNNCC	1 cut(s)	522
BmsI	GCATC	6 cut(s)	253, 390, 498, 540, 631, 856
BpiI	GAAGAC	1 cut(s)	19
BplI	GAGNNNNNCTC	2 cut(s)	94, 126
BpuEI	CTTGAG	3 cut(s)	407, 557, 920
BsaAI	YACGTR	1 cut(s)	441
BsaBI	GATNNNNATC	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	223
BsaXI	ACNNNNNCTCC	4 cut(s)	121, 151, 819, 849
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 884
Bse118I	RCCGGY	1 cut(s)	757
Bse1I	ACTGG	1 cut(s)	691
Bse3DI	GCAATG	1 cut(s)	852
Bse8I	GATNNNNATC	1 cut(s)	225
BseAI	TCCGGA	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	2 cut(s)	381, 818
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	2 cut(s)	146, 884
BseMI	GCAATG	1 cut(s)	852
BseMII	CTCAG	2 cut(s)	537, 545
BseNI	ACTGG	1 cut(s)	691
BseRI	GAGGAG	1 cut(s)	66
BseSI	GKGCMC	1 cut(s)	694
BseXI	GCAGC	1 cut(s)	325
BsiHKAI	GWGCWC	2 cut(s)	674, 694
BsiSI	CCGG	4 cut(s)	21, 224, 758, 788
BslFI	GGGAC	1 cut(s)	525
BslI	CCNNNNNNNGG	2 cut(s)	146, 884
BsmAI	GTCTC	2 cut(s)	155, 921
BsmFI	GGGAC	1 cut(s)	525
BsmI	GAATGC	1 cut(s)	194
Bso31I	GGTCTC	1 cut(s)	155
Bsp1286I	GDGCHC	2 cut(s)	674, 694
Bsp13I	TCCGGA	1 cut(s)	223
Bsp1407I	TGTACA	1 cut(s)	505
Bsp143I	GATC	4 cut(s)	220, 226, 695, 831
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	3 cut(s)	64, 341, 708
BspCNI	CTCAG	2 cut(s)	538, 546
BspEI	TCCGGA	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	522
BspPI	GGATC	2 cut(s)	215, 234
BspQI	GCTCTTC	1 cut(s)	936
BspTI	CTTAAG	1 cut(s)	890
BspTNI	GGTCTC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	852
BsrFI	RCCGGY	1 cut(s)	757
BsrGI	TGTACA	1 cut(s)	505
BsrI	ACTGG	1 cut(s)	691
BssAI	RCCGGY	1 cut(s)	757
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	4 cut(s)	220, 226, 695, 831
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	114
Bst6I	CTCTTC	2 cut(s)	139, 936
BstACI	GRCGYC	1 cut(s)	24
BstAFI	CTTAAG	1 cut(s)	890
BstAUI	TGTACA	1 cut(s)	505
BstBAI	YACGTR	1 cut(s)	441
BstDEI	CTNAG	2 cut(s)	546, 554
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	2 cut(s)	381, 818
BstKTI	GATC	4 cut(s)	223, 229, 698, 834
BstMAI	GTCTC	2 cut(s)	155, 921
BstMBI	GATC	4 cut(s)	220, 226, 695, 831
BstMWI	GCNNNNNNNGC	1 cut(s)	628
BstNSI	RCATGY	1 cut(s)	797
BstSLI	GKGCMC	1 cut(s)	694
BstV1I	GCAGC	1 cut(s)	325
BstV2I	GAAGAC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BtgI	CCRYGG	1 cut(s)	114
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	381, 818
BtsI	GCAGTG	1 cut(s)	847
BtsIMutI	CAGTG	1 cut(s)	847
Cfr10I	RCCGGY	1 cut(s)	757
Cfr13I	GGNCC	2 cut(s)	323, 589
CseI	GACGC	2 cut(s)	13, 633
Csp6I	GTAC	1 cut(s)	506
CviAII	CATG	3 cut(s)	115, 481, 794
CviQI	GTAC	1 cut(s)	506
DdeI	CTNAG	2 cut(s)	546, 554
DpnI	GATC	4 cut(s)	222, 228, 697, 833
DpnII	GATC	4 cut(s)	220, 226, 695, 831
Eam1104I	CTCTTC	2 cut(s)	139, 936
EarI	CTCTTC	2 cut(s)	139, 936
EciI	GGCGGA	1 cut(s)	53
Ecl136II	GAGCTC	1 cut(s)	672
Eco130I	CCWWGG	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	674
Eco31I	GGTCTC	1 cut(s)	155
Eco32I	GATATC	1 cut(s)	736
Eco47I	GGWCC	2 cut(s)	323, 589
Eco53kI	GAGCTC	1 cut(s)	672
Eco57I	CTGAAG	2 cut(s)	264, 903
EcoICRI	GAGCTC	1 cut(s)	672
EcoRV	GATATC	1 cut(s)	736
EcoT14I	CCWWGG	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	674
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	3 cut(s)	118, 484, 797
FaiI	YATR	7 cut(s)	116, 200, 205, 207, 281, 482, 795
FaqI	GGGAC	1 cut(s)	525
FatI	CATG	3 cut(s)	114, 480, 793
Fnu4HI	GCNGC	2 cut(s)	339, 342
FokI	GGATG	2 cut(s)	368, 825
FriOI	GRGCYC	1 cut(s)	674
Fsp4HI	GCNGC	2 cut(s)	339, 342
GluI	GCNGC	2 cut(s)	339, 342
HapII	CCGG	4 cut(s)	21, 224, 758, 788
HgaI	GACGC	2 cut(s)	13, 633
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	3 cut(s)	118, 484, 797
HinfI	GANTC	4 cut(s)	60, 83, 105, 454
HpaII	CCGG	4 cut(s)	21, 224, 758, 788
HphI	GGTGA	2 cut(s)	230, 875
Hpy166II	GTNNAC	3 cut(s)	438, 506, 692
Hpy188I	TCNGA	5 cut(s)	277, 307, 426, 494, 649
Hpy188III	TCNNGA	7 cut(s)	80, 100, 224, 260, 524, 536, 727
Hpy8I	GTNNAC	3 cut(s)	438, 506, 692
HpyAV	CCTTC	3 cut(s)	644, 724, 878
HpyCH4IV	ACGT	2 cut(s)	440, 463
HpyCH4V	TGCA	3 cut(s)	692, 845, 869
HpyF10VI	GCNNNNNNNGC	1 cut(s)	628
HpyF3I	CTNAG	2 cut(s)	546, 554
HpySE526I	ACGT	2 cut(s)	440, 463
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	3 cut(s)	118, 484, 797
Kpn2I	TCCGGA	1 cut(s)	223
Kzo9I	GATC	4 cut(s)	220, 226, 695, 831
LguI	GCTCTTC	1 cut(s)	936
LmnI	GCTCC	3 cut(s)	790, 818, 895
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	6 cut(s)	253, 390, 498, 540, 631, 856
MaeII	ACGT	2 cut(s)	440, 463
MaeIII	GTNAC	1 cut(s)	682
MalI	GATC	4 cut(s)	222, 228, 697, 833
MboI	GATC	4 cut(s)	220, 226, 695, 831
MboII	GAAGA	5 cut(s)	19, 22, 63, 126, 923
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	2 cut(s)	674, 694
MluCI	AATT	4 cut(s)	54, 287, 633, 675
MmeI	TCCRAC	2 cut(s)	336, 375
MnlI	CCTC	9 cut(s)	44, 87, 142, 354, 383, 532, 543, 578, 736
MroI	TCCGGA	1 cut(s)	223
MseI	TTAA	3 cut(s)	459, 891, 921
MslI	CAYNNNNRTG	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	215
MspCI	CTTAAG	1 cut(s)	890
MspI	CCGG	4 cut(s)	21, 224, 758, 788
MunI	CAATTG	1 cut(s)	675
Mva1269I	GAATGC	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	628
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	4 cut(s)	220, 226, 695, 831
NlaIII	CATG	3 cut(s)	118, 484, 797
NlaIV	GGNNCC	1 cut(s)	522
NmuCI	GTSAC	1 cut(s)	682
NspI	RCATGY	1 cut(s)	797
PciSI	GCTCTTC	1 cut(s)	936
PcsI	WCGNNNNNNNCGW	1 cut(s)	437
PctI	GAATGC	1 cut(s)	194
PfeI	GAWTC	4 cut(s)	60, 83, 105, 454
PkrI	GCNGC	2 cut(s)	340, 343
Ppu21I	YACGTR	1 cut(s)	441
Psp124BI	GAGCTC	1 cut(s)	674
PspN4I	GGNNCC	1 cut(s)	522
PspPI	GGNCC	2 cut(s)	323, 589
PsuI	RGATCY	1 cut(s)	226
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	1 cut(s)	507
RsaNI	GTAC	1 cut(s)	506
RseI	CAYNNNNRTG	1 cut(s)	113
SacI	GAGCTC	1 cut(s)	674
SapI	GCTCTTC	1 cut(s)	936
SaqAI	TTAA	3 cut(s)	459, 891, 921
SatI	GCNGC	2 cut(s)	339, 342
Sau3AI	GATC	4 cut(s)	220, 226, 695, 831
Sau96I	GGNCC	2 cut(s)	323, 589
SduI	GDGCHC	2 cut(s)	674, 694
SfaNI	GCATC	6 cut(s)	253, 390, 498, 540, 631, 856
SinI	GGWCC	2 cut(s)	323, 589
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	4 cut(s)	386, 536, 890, 899
SmoI	CTYRAG	4 cut(s)	386, 536, 890, 899
Sse9I	AATT	4 cut(s)	54, 287, 633, 675
SsiI	CCGC	3 cut(s)	64, 341, 708
SstI	GAGCTC	1 cut(s)	674
StyI	CCWWGG	1 cut(s)	114
TaiI	ACGT	2 cut(s)	443, 466
TaqI	TCGA	2 cut(s)	285, 375
TaqII	GACCGA	1 cut(s)	137
TasI	AATT	4 cut(s)	54, 287, 633, 675
TatI	WGTACW	1 cut(s)	505
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	4 cut(s)	60, 83, 105, 454
Tru1I	TTAA	3 cut(s)	459, 891, 921
Tru9I	TTAA	3 cut(s)	459, 891, 921
TscAI	CASTG	1 cut(s)	847
TseFI	GTSAC	1 cut(s)	682
TseI	GCWGC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	682
TspDTI	ATGAA	4 cut(s)	75, 187, 469, 641
TspRI	CASTG	1 cut(s)	847
Vha464I	CTTAAG	1 cut(s)	890
VneI	GTGCAC	1 cut(s)	690
VpaK11BI	GGWCC	2 cut(s)	323, 589
XceI	RCATGY	1 cut(s)	797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.