Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006471

Physical Location & Seq

Genomic Coordinates Forward (+)

32771015 .. 32772850

Gene Structure 1836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00026080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCTTCTCCGACCACCACTAACACCAGCGTCGGCCTCTCCAAACTTTCATCAAGCTGCGGGAGCAAGGCAAGGTATGAAATTCTAATTGGTGTGCCAGGACTATTTTCATATCAGTTAAATGTCAAGGTTGCATTAATCCCTTACACTACTGCCGGTGATCCCGATCTATCGGTCACCACGAAGCATTGGAGGTCCTGGATTCTTGCTGCAGCCACTCGTGCCTTGGCAAGAGGGACCAATTTGAATTCAATCCTGGCAATGTTGAAGGAGTTTGCAAGTACTGATAAAATCATGACTTGTGTTAATGCTGCCATCCTTAGCACTCTTACTCTCCAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

114

Amino Acids

12.14

Weight (kDa)

9.56

Isoelectric Point (pI)

23.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54640
fragaria_vesca	FvH4_2g22570
malus_domestica	MD05G1206300.v1.1 MD10G1193300.v1.1
prunus_persica	Prupe.8G232700_v2.0.a1
pyrus_communis	pycom05g19230 pycom10g16710
rosa_chinensis	RchiOBHm_Chr3g0488871 RchiOBHm_Chr6g0284041 RchiOBHm_Chr6g0289611
rosa_laevigata	RLG00000012288 RLG00000026432
rosa_multiflora	Rmu_co8332575.1_g000001 Rmu_sc0000607.1_g000042 Rmu_sc0001527.1_g000067 Rmu_sc0001850.1_g000026 Rmu_sc0005376.1_g000002
rosa_roxburghii	Rroxscaffold_1G00026080 Rroxscaffold_7G00177810
rosa_rugosa	Rorug06G0205100
rosa_samantha	Rh5AG506400 Rh6BG323300 Rh6CG329700 Rh6DG267800 Rh6DG315100
rosa_wichuraiana	Rw6G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	60
AclWI	GGATC	1 cut(s)	155
AcsI	RAATTY	3 cut(s)	81, 247, 339
AfaI	GTAC	1 cut(s)	283
AgsI	TTSAA	3 cut(s)	247, 252, 268
AjnI	CCWGG	3 cut(s)	97, 197, 255
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
AlwI	GGATC	1 cut(s)	155
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	4 cut(s)	57, 209, 212, 311
ApoI	RAATTY	3 cut(s)	81, 247, 339
AseI	ATTAAT	1 cut(s)	137
AspS9I	GGNCC	2 cut(s)	195, 237
AsuHPI	GGTGA	2 cut(s)	169, 170
AvaII	GGWCC	2 cut(s)	195, 237
BauI	CACGAG	1 cut(s)	219
BbvI	GCAGC	4 cut(s)	44, 196, 224, 298
BccI	CCATC	1 cut(s)	323
BciT130I	CCWGG	3 cut(s)	99, 199, 257
BfmI	CTRYAG	1 cut(s)	210
BisI	GCNGC	4 cut(s)	58, 210, 213, 312
BlsI	GCNGC	4 cut(s)	59, 211, 214, 313
BmcAI	AGTACT	1 cut(s)	283
Bme1390I	CCNGG	3 cut(s)	99, 199, 257
Bme18I	GGWCC	2 cut(s)	195, 237
BmgT120I	GGNCC	2 cut(s)	195, 237
BmiI	GGNNCC	1 cut(s)	238
BmrFI	CCNGG	3 cut(s)	99, 199, 257
Bpu10I	CCTNAGC	1 cut(s)	320
BsaBI	GATNNNNATC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	225
Bse118I	RCCGGY	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	267
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	3 cut(s)	99, 199, 257
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	315
BseJI	GATNNNNATC	1 cut(s)	165
BseMI	GCAATG	1 cut(s)	267
BseXI	GCAGC	4 cut(s)	44, 196, 224, 298
BshFI	GGCC	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	250
BsnI	GGCC	1 cut(s)	36
Bsp143I	GATC	2 cut(s)	160, 166
BspACI	CCGC	1 cut(s)	60
BspANI	GGCC	1 cut(s)	36
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	238
BspMAI	CTGCAG	1 cut(s)	214
BspPI	GGATC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	267
BsrFI	RCCGGY	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	2 cut(s)	160, 166
BssSI	CACGAG	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	225
Bst2BI	CACGAG	1 cut(s)	219
Bst2UI	CCWGG	3 cut(s)	99, 199, 257
BstDEI	CTNAG	1 cut(s)	320
BstEII	GGTNACC	1 cut(s)	175
BstF5I	GGATG	1 cut(s)	315
BstKTI	GATC	2 cut(s)	163, 169
BstMBI	GATC	2 cut(s)	160, 166
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 221
BstNI	CCWGG	3 cut(s)	99, 199, 257
BstPI	GGTNACC	1 cut(s)	175
BstSCI	CCNGG	3 cut(s)	97, 197, 255
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	4 cut(s)	44, 196, 224, 298
BsuRI	GGCC	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	315
CciI	TCATGA	1 cut(s)	294
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	2 cut(s)	195, 237
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	282
CviAII	CATG	1 cut(s)	295
CviJI	RGCY	4 cut(s)	5, 36, 57, 215
CviKI_1	RGCY	4 cut(s)	5, 36, 57, 215
CviQI	GTAC	1 cut(s)	282
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	2 cut(s)	162, 168
DpnII	GATC	2 cut(s)	160, 166
Eco130I	CCWWGG	1 cut(s)	225
Eco47I	GGWCC	2 cut(s)	195, 237
Eco91I	GGTNACC	1 cut(s)	175
EcoO109I	RGGNCCY	1 cut(s)	195
EcoO65I	GGTNACC	1 cut(s)	175
EcoRI	GAATTC	1 cut(s)	247
EcoRII	CCWGG	3 cut(s)	97, 197, 255
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	1 cut(s)	298
FaiI	YATR	3 cut(s)	78, 112, 296
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	1 cut(s)	294
FauI	CCCGC	1 cut(s)	53
Fnu4HI	GCNGC	4 cut(s)	58, 210, 213, 312
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	4 cut(s)	58, 210, 213, 312
GluI	GCNGC	4 cut(s)	58, 210, 213, 312
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	1 cut(s)	19
Hin1II	CATG	1 cut(s)	298
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	2 cut(s)	169, 170
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	2 cut(s)	164, 295
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	262
HpyCH4V	TGCA	3 cut(s)	134, 212, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 221
HpyF3I	CTNAG	1 cut(s)	320
Hsp92II	CATG	1 cut(s)	298
Kzo9I	GATC	2 cut(s)	160, 166
LmnI	GCTCC	1 cut(s)	63
LpnPI	CCDG	8 cut(s)	40, 84, 111, 169, 184, 211, 242, 269
Lsp1109I	GCAGC	4 cut(s)	44, 196, 224, 298
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	2 cut(s)	162, 168
MboI	GATC	2 cut(s)	160, 166
MluCI	AATT	5 cut(s)	81, 87, 241, 247, 339
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	3 cut(s)	47, 186, 227
MseI	TTAA	3 cut(s)	119, 137, 306
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	3 cut(s)	99, 199, 257
MvaI	CCWGG	3 cut(s)	99, 199, 257
MwoI	GCNNNNNNNGC	2 cut(s)	63, 221
NdeII	GATC	2 cut(s)	160, 166
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	1 cut(s)	238
NmuCI	GTSAC	1 cut(s)	175
PagI	TCATGA	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	202
PfoI	TCCNGGA	1 cut(s)	197
PkrI	GCNGC	4 cut(s)	59, 211, 214, 313
PpuMI	RGGWCCY	1 cut(s)	195
PshBI	ATTAAT	1 cut(s)	137
Psp5II	RGGWCCY	1 cut(s)	195
Psp6I	CCWGG	3 cut(s)	97, 197, 255
PspEI	GGTNACC	1 cut(s)	175
PspGI	CCWGG	3 cut(s)	97, 197, 255
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	2 cut(s)	195, 237
PspPPI	RGGWCCY	1 cut(s)	195
PstI	CTGCAG	1 cut(s)	214
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
SaqAI	TTAA	3 cut(s)	119, 137, 306
SatI	GCNGC	4 cut(s)	58, 210, 213, 312
Sau3AI	GATC	2 cut(s)	160, 166
Sau96I	GGNCC	2 cut(s)	195, 237
ScaI	AGTACT	1 cut(s)	283
ScrFI	CCNGG	3 cut(s)	99, 199, 257
SetI	ASST	4 cut(s)	59, 77, 132, 197
SfcI	CTRYAG	1 cut(s)	210
SinI	GGWCC	2 cut(s)	195, 237
Sse9I	AATT	5 cut(s)	81, 87, 241, 247, 339
SsiI	CCGC	1 cut(s)	60
StyD4I	CCNGG	3 cut(s)	97, 197, 255
StyI	CCWWGG	1 cut(s)	225
TaqII	GACCGA	1 cut(s)	163
TasI	AATT	5 cut(s)	81, 87, 241, 247, 339
TatI	WGTACW	1 cut(s)	281
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	3 cut(s)	119, 137, 306
Tru9I	TTAA	3 cut(s)	119, 137, 306
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	4 cut(s)	57, 209, 212, 311
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	3 cut(s)	39, 93, 99
VpaK11BI	GGWCC	2 cut(s)	195, 237
VspI	ATTAAT	1 cut(s)	137
XapI	RAATTY	3 cut(s)	81, 247, 339
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
ZrmI	AGTACT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.