Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8332575.1

Orthogroup ID

OG0006471

Physical Location & Seq

Genomic Coordinates Forward (+)

57 .. 801

Gene Structure 745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8332575.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atggcttctctgaccaccaccaacgccaccgtcggcctctccaaaactttcatcaaactgaaggagcagggcaaggttgcattaatcccttacattactgccggtgatcctgatctatcggtcaccgcagacgcattgaaggtcctggattcttgtggatcggacataattgaattaggtgtgccatactctgatccattagcagatgggccagttatacaggctgcagccactcgtgccttggcaagagggaccaatttggattcaatcctggcaatgttgaaggaggtacctttacatgcaatcttttattatccgaccaatttcttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

110

Amino Acids

11.59

Weight (kDa)

4.83

Isoelectric Point (pI)

19.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54640
fragaria_vesca	FvH4_2g22570
malus_domestica	MD05G1206300.v1.1 MD10G1193300.v1.1
prunus_persica	Prupe.8G232700_v2.0.a1
pyrus_communis	pycom05g19230 pycom10g16710
rosa_chinensis	RchiOBHm_Chr3g0488871 RchiOBHm_Chr6g0284041 RchiOBHm_Chr6g0289611
rosa_laevigata	RLG00000012288 RLG00000026432
rosa_multiflora	Rmu_co8332575.1_g000001 Rmu_sc0000607.1_g000042 Rmu_sc0001527.1_g000067 Rmu_sc0001850.1_g000026 Rmu_sc0005376.1_g000002
rosa_roxburghii	Rroxscaffold_1G00026080 Rroxscaffold_7G00177810
rosa_rugosa	Rorug06G0205100
rosa_samantha	Rh5AG506400 Rh6BG323300 Rh6CG329700 Rh6DG267800 Rh6DG315100
rosa_wichuraiana	Rw6G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	289
AccB1I	GGYRCC	1 cut(s)	289
AciI	CCGC	1 cut(s)	126
AclWI	GGATC	3 cut(s)	101, 166, 188
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	1 cut(s)	291
AgsI	TTSAA	4 cut(s)	139, 173, 267, 283
AjnI	CCWGG	2 cut(s)	144, 270
AlwI	GGATC	3 cut(s)	101, 166, 188
AoxI	GGCC	2 cut(s)	34, 209
ApeKI	GCWGC	2 cut(s)	224, 227
AseI	ATTAAT	1 cut(s)	83
Asp718I	GGTACC	1 cut(s)	289
AspS9I	GGNCC	3 cut(s)	142, 209, 252
AsuHPI	GGTGA	2 cut(s)	115, 116
AvaII	GGWCC	2 cut(s)	142, 252
BanI	GGYRCC	1 cut(s)	289
BauI	CACGAG	1 cut(s)	234
BbvI	GCAGC	2 cut(s)	211, 239
BccI	CCATC	1 cut(s)	200
BciT130I	CCWGG	2 cut(s)	146, 272
BfmI	CTRYAG	1 cut(s)	225
BisI	GCNGC	2 cut(s)	225, 228
BlsI	GCNGC	2 cut(s)	226, 229
Bme1390I	CCNGG	2 cut(s)	146, 272
Bme18I	GGWCC	2 cut(s)	142, 252
BmgT120I	GGNCC	3 cut(s)	142, 209, 252
BmiI	GGNNCC	2 cut(s)	253, 291
BmrFI	CCNGG	2 cut(s)	146, 272
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	240
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	212
Bse3DI	GCAATG	1 cut(s)	282
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	146, 272
BseDI	CCNNGG	1 cut(s)	240
BseJI	GATNNNNATC	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	212
BseXI	GCAGC	2 cut(s)	211, 239
BshFI	GGCC	2 cut(s)	36, 211
BshNI	GGYRCC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	265
BsmFI	GGGAC	1 cut(s)	265
BsnI	GGCC	2 cut(s)	36, 211
Bsp143I	GATC	4 cut(s)	106, 112, 158, 193
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	2 cut(s)	36, 211
BspLI	GGNNCC	2 cut(s)	253, 291
BspMAI	CTGCAG	1 cut(s)	229
BspPI	GGATC	3 cut(s)	101, 166, 188
BspT107I	GGYRCC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	4 cut(s)	106, 112, 158, 193
BssSI	CACGAG	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	240
Bst2BI	CACGAG	1 cut(s)	234
Bst2UI	CCWGG	2 cut(s)	146, 272
Bst4CI	ACNGT	1 cut(s)	31
BstEII	GGTNACC	1 cut(s)	121
BstKTI	GATC	4 cut(s)	109, 115, 161, 196
BstMBI	GATC	4 cut(s)	106, 112, 158, 193
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	2 cut(s)	146, 272
BstNSI	RCATGY	1 cut(s)	302
BstPI	GGTNACC	1 cut(s)	121
BstSCI	CCNGG	2 cut(s)	144, 270
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	211, 239
BsuRI	GGCC	2 cut(s)	36, 211
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	3 cut(s)	142, 209, 252
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	1 cut(s)	299
CviJI	RGCY	5 cut(s)	5, 36, 211, 224, 230
CviKI_1	RGCY	5 cut(s)	5, 36, 211, 224, 230
CviQI	GTAC	1 cut(s)	290
DpnI	GATC	4 cut(s)	108, 114, 160, 195
DpnII	GATC	4 cut(s)	106, 112, 158, 193
Eco130I	CCWWGG	1 cut(s)	240
Eco47I	GGWCC	2 cut(s)	142, 252
Eco57I	CTGAAG	1 cut(s)	80
Eco91I	GGTNACC	1 cut(s)	121
EcoO109I	RGGNCCY	1 cut(s)	142
EcoO65I	GGTNACC	1 cut(s)	121
EcoRII	CCWGG	2 cut(s)	144, 270
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	1 cut(s)	302
FaiI	YATR	4 cut(s)	167, 187, 218, 300
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	1 cut(s)	298
Fnu4HI	GCNGC	2 cut(s)	225, 228
Fsp4HI	GCNGC	2 cut(s)	225, 228
GluI	GCNGC	2 cut(s)	225, 228
HaeIII	GGCC	2 cut(s)	36, 211
HapII	CCGG	1 cut(s)	102
HgaI	GACGC	1 cut(s)	140
Hin1II	CATG	1 cut(s)	302
HinfI	GANTC	2 cut(s)	149, 263
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	2 cut(s)	115, 116
Hpy188I	TCNGA	4 cut(s)	12, 163, 193, 318
Hpy188III	TCNNGA	1 cut(s)	110
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	3 cut(s)	55, 133, 277
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	3 cut(s)	80, 227, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
Hsp92II	CATG	1 cut(s)	302
KpnI	GGTACC	1 cut(s)	293
Kzo9I	GATC	4 cut(s)	106, 112, 158, 193
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	9 cut(s)	53, 115, 123, 131, 158, 206, 225, 257, 284
Lsp1109I	GCAGC	2 cut(s)	211, 239
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	4 cut(s)	108, 114, 160, 195
MboI	GATC	4 cut(s)	106, 112, 158, 193
MluCI	AATT	4 cut(s)	168, 173, 256, 322
MnlI	CCTC	3 cut(s)	47, 242, 280
MseI	TTAA	1 cut(s)	83
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	2 cut(s)	146, 272
MvaI	CCWGG	2 cut(s)	146, 272
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeII	GATC	4 cut(s)	106, 112, 158, 193
NlaIII	CATG	1 cut(s)	302
NlaIV	GGNNCC	2 cut(s)	253, 291
NmuCI	GTSAC	1 cut(s)	121
NspI	RCATGY	1 cut(s)	302
PfeI	GAWTC	2 cut(s)	149, 263
PfoI	TCCNGGA	1 cut(s)	144
PkrI	GCNGC	2 cut(s)	226, 229
PpuMI	RGGWCCY	1 cut(s)	142
PshBI	ATTAAT	1 cut(s)	83
Psp5II	RGGWCCY	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	144, 270
PspEI	GGTNACC	1 cut(s)	121
PspGI	CCWGG	2 cut(s)	144, 270
PspN4I	GGNNCC	2 cut(s)	253, 291
PspPI	GGNCC	3 cut(s)	142, 209, 252
PspPPI	RGGWCCY	1 cut(s)	142
PstI	CTGCAG	1 cut(s)	229
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	2 cut(s)	225, 228
Sau3AI	GATC	4 cut(s)	106, 112, 158, 193
Sau96I	GGNCC	3 cut(s)	142, 209, 252
ScrFI	CCNGG	2 cut(s)	146, 272
SetI	ASST	5 cut(s)	78, 144, 181, 291, 295
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	2 cut(s)	142, 252
Sse9I	AATT	4 cut(s)	168, 173, 256, 322
SsiI	CCGC	1 cut(s)	126
StyD4I	CCNGG	2 cut(s)	144, 270
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	31
TaqII	GACCGA	1 cut(s)	109
TasI	AATT	4 cut(s)	168, 173, 256, 322
TfiI	GAWTC	2 cut(s)	149, 263
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	2 cut(s)	224, 227
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	40
VpaK11BI	GGWCC	2 cut(s)	142, 252
VspI	ATTAAT	1 cut(s)	83
XceI	RCATGY	1 cut(s)	302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.