Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006471

Physical Location & Seq

Genomic Coordinates Reverse (-)

85650092 .. 85652489

Gene Structure 2398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG506400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCTTCTTCTCTTAAATCTGCGACTGGTTTTCTTCAGCTAAAGAAGCCTCAAAGCCCATTGCTTTTCCGTTCTCCGGCTCAAAAGTCCACCCTTTCATTCAAGAAATTTACTCCAATGGCTTCTCTGACCACCACCAACACCAGCATCGGCCTCTCCAAAACTTTCATCAAACTGAAGGAGCAAGGCAAGGTTGCATTAATCCCTTACACTACTGCTGGTGATCCTGATCTATCAGTCACCGCAGAAGCATTGAAGGTCCTGGATTCTTGTGGATCGGACATAATTGAATTAGGCGTGCCATACTCTGATCCATTAGCAGCTGGGCCAGTTATACAGGCTGCAGCCACTCGTGCCTTGGCAAGAGGGACCAATTTGAATTCAATCCTGGAGATGTTGAAGGAGGTACCTTTACATGCAATCTTTTATTATCTGACCAATCTCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

149

Amino Acids

15.9

Weight (kDa)

9.41

Isoelectric Point (pI)

31.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trp_syntA	PF00290	56 - 136	8.6e-30	Tryptophan synthase alpha chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54640
fragaria_vesca	FvH4_2g22570
malus_domestica	MD05G1206300.v1.1 MD10G1193300.v1.1
prunus_persica	Prupe.8G232700_v2.0.a1
pyrus_communis	pycom05g19230 pycom10g16710
rosa_chinensis	RchiOBHm_Chr3g0488871 RchiOBHm_Chr6g0284041 RchiOBHm_Chr6g0289611
rosa_laevigata	RLG00000012288 RLG00000026432
rosa_multiflora	Rmu_co8332575.1_g000001 Rmu_sc0000607.1_g000042 Rmu_sc0001527.1_g000067 Rmu_sc0001850.1_g000026 Rmu_sc0005376.1_g000002
rosa_roxburghii	Rroxscaffold_1G00026080 Rroxscaffold_7G00177810
rosa_rugosa	Rorug06G0205100
rosa_samantha	Rh5AG506400 Rh6BG323300 Rh6CG329700 Rh6DG267800 Rh6DG315100
rosa_wichuraiana	Rw6G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	406
AccB1I	GGYRCC	1 cut(s)	406
AciI	CCGC	1 cut(s)	243
AclWI	GGATC	3 cut(s)	218, 283, 305
AcsI	RAATTY	2 cut(s)	107, 379
AcuI	CTGAAG	2 cut(s)	20, 197
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	6 cut(s)	103, 256, 290, 379, 384, 400
AjnI	CCWGG	2 cut(s)	261, 387
AluBI	AGCT	2 cut(s)	40, 323
AluI	AGCT	2 cut(s)	40, 323
AlwI	GGATC	3 cut(s)	218, 283, 305
AoxI	GGCC	2 cut(s)	151, 326
ApeKI	GCWGC	3 cut(s)	320, 341, 344
ApoI	RAATTY	2 cut(s)	107, 379
AseI	ATTAAT	1 cut(s)	200
Asp718I	GGTACC	1 cut(s)	406
AspS9I	GGNCC	3 cut(s)	259, 326, 369
AsuHPI	GGTGA	2 cut(s)	232, 233
AvaII	GGWCC	2 cut(s)	259, 369
BanI	GGYRCC	1 cut(s)	406
BauI	CACGAG	1 cut(s)	351
BbvI	GCAGC	3 cut(s)	328, 332, 356
BciT130I	CCWGG	2 cut(s)	263, 389
BfmI	CTRYAG	1 cut(s)	342
BisI	GCNGC	3 cut(s)	321, 342, 345
BlsI	GCNGC	3 cut(s)	322, 343, 346
Bme1390I	CCNGG	2 cut(s)	263, 389
Bme18I	GGWCC	2 cut(s)	259, 369
BmgT120I	GGNCC	3 cut(s)	259, 326, 369
BmiI	GGNNCC	2 cut(s)	370, 408
BmrFI	CCNGG	2 cut(s)	263, 389
BmsI	GCATC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	410
BsaBI	GATNNNNATC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	31, 329
Bse3DI	GCAATG	1 cut(s)	59
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	2 cut(s)	263, 389
BseDI	CCNNGG	1 cut(s)	357
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	59
BseNI	ACTGG	2 cut(s)	31, 329
BseXI	GCAGC	3 cut(s)	328, 332, 356
BseYI	CCCAGC	1 cut(s)	323
BshFI	GGCC	2 cut(s)	153, 328
BshNI	GGYRCC	1 cut(s)	406
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	2 cut(s)	153, 328
Bsp143I	GATC	4 cut(s)	223, 229, 275, 310
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	2 cut(s)	153, 328
BspLI	GGNNCC	2 cut(s)	370, 408
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	3 cut(s)	218, 283, 305
BspT107I	GGYRCC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	59
BsrI	ACTGG	2 cut(s)	31, 329
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	4 cut(s)	223, 229, 275, 310
BssSI	CACGAG	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	357
Bst2BI	CACGAG	1 cut(s)	351
Bst2UI	CCWGG	2 cut(s)	263, 389
BstC8I	GCNNGC	1 cut(s)	299
BstKTI	GATC	4 cut(s)	226, 232, 278, 313
BstMBI	GATC	4 cut(s)	223, 229, 275, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 353
BstNI	CCWGG	2 cut(s)	263, 389
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	2 cut(s)	261, 387
BstSFI	CTRYAG	1 cut(s)	342
BstV1I	GCAGC	3 cut(s)	328, 332, 356
BsuRI	GGCC	2 cut(s)	153, 328
Cac8I	GCNNGC	1 cut(s)	299
Cfr13I	GGNCC	3 cut(s)	259, 326, 369
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	1 cut(s)	416
CviQI	GTAC	1 cut(s)	407
DpnI	GATC	4 cut(s)	225, 231, 277, 312
DpnII	GATC	4 cut(s)	223, 229, 275, 310
Eco130I	CCWWGG	1 cut(s)	357
Eco47I	GGWCC	2 cut(s)	259, 369
Eco57I	CTGAAG	2 cut(s)	20, 197
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRI	GAATTC	1 cut(s)	379
EcoRII	CCWGG	2 cut(s)	261, 387
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	1 cut(s)	419
FaiI	YATR	4 cut(s)	284, 304, 335, 417
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	1 cut(s)	415
Fnu4HI	GCNGC	3 cut(s)	321, 342, 345
Fsp4HI	GCNGC	3 cut(s)	321, 342, 345
GluI	GCNGC	3 cut(s)	321, 342, 345
GsaI	CCCAGC	1 cut(s)	327
GsuI	CTGGAG	1 cut(s)	410
HaeIII	GGCC	2 cut(s)	153, 328
HapII	CCGG	1 cut(s)	77
Hin1II	CATG	1 cut(s)	419
HinfI	GANTC	1 cut(s)	266
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	2 cut(s)	232, 233
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	4 cut(s)	129, 280, 310, 435
Hpy188III	TCNNGA	2 cut(s)	103, 227
Hpy8I	GTNNAC	1 cut(s)	90
HpyAV	CCTTC	3 cut(s)	172, 250, 394
HpyCH4V	TGCA	3 cut(s)	197, 344, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 353
Hsp92II	CATG	1 cut(s)	419
KpnI	GGTACC	1 cut(s)	410
Kzo9I	GATC	4 cut(s)	223, 229, 275, 310
LmnI	GCTCC	1 cut(s)	181
Lsp1109I	GCAGC	3 cut(s)	328, 332, 356
LweI	GCATC	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	4 cut(s)	225, 231, 277, 312
MboI	GATC	4 cut(s)	223, 229, 275, 310
MboII	GAAGA	1 cut(s)	26
MluCI	AATT	5 cut(s)	107, 285, 290, 373, 379
MnlI	CCTC	4 cut(s)	60, 164, 359, 397
MseI	TTAA	2 cut(s)	15, 200
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	2 cut(s)	263, 389
MvaI	CCWGG	2 cut(s)	263, 389
MwoI	GCNNNNNNNGC	2 cut(s)	46, 353
NdeII	GATC	4 cut(s)	223, 229, 275, 310
NlaIII	CATG	1 cut(s)	419
NlaIV	GGNNCC	2 cut(s)	370, 408
NmuCI	GTSAC	1 cut(s)	238
NspI	RCATGY	1 cut(s)	419
PfeI	GAWTC	1 cut(s)	266
PfoI	TCCNGGA	2 cut(s)	261, 387
PkrI	GCNGC	3 cut(s)	322, 343, 346
PpuMI	RGGWCCY	1 cut(s)	259
PshBI	ATTAAT	1 cut(s)	200
Psp5II	RGGWCCY	1 cut(s)	259
Psp6I	CCWGG	2 cut(s)	261, 387
PspFI	CCCAGC	1 cut(s)	323
PspGI	CCWGG	2 cut(s)	261, 387
PspN4I	GGNNCC	2 cut(s)	370, 408
PspPI	GGNCC	3 cut(s)	259, 326, 369
PspPPI	RGGWCCY	1 cut(s)	259
PstI	CTGCAG	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
SaqAI	TTAA	2 cut(s)	15, 200
SatI	GCNGC	3 cut(s)	321, 342, 345
Sau3AI	GATC	4 cut(s)	223, 229, 275, 310
Sau96I	GGNCC	3 cut(s)	259, 326, 369
ScrFI	CCNGG	2 cut(s)	263, 389
SetI	ASST	6 cut(s)	42, 195, 261, 325, 408, 412
SfaNI	GCATC	1 cut(s)	156
SfcI	CTRYAG	1 cut(s)	342
SinI	GGWCC	2 cut(s)	259, 369
Sse9I	AATT	5 cut(s)	107, 285, 290, 373, 379
SsiI	CCGC	1 cut(s)	243
StyD4I	CCNGG	2 cut(s)	261, 387
StyI	CCWWGG	1 cut(s)	357
TasI	AATT	5 cut(s)	107, 285, 290, 373, 379
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	2 cut(s)	15, 200
Tru9I	TTAA	2 cut(s)	15, 200
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	3 cut(s)	320, 341, 344
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	87, 157
TspGWI	ACGGA	1 cut(s)	59
VpaK11BI	GGWCC	2 cut(s)	259, 369
VspI	ATTAAT	1 cut(s)	200
XapI	RAATTY	2 cut(s)	107, 379
XceI	RCATGY	1 cut(s)	419
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.