Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001527.1

Orthogroup ID

OG0006471

Physical Location & Seq

Genomic Coordinates Forward (+)

318555 .. 319416

Gene Structure 862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001527.1_g000067.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atggcttcttctcttaaatcggcgactggtgttcttcaggtgaagaaccctcaaagcccagtgctttgccgttctccggctcaaaagtccaccctttcattcaagaaatttactccaatggcttctctgaccaccaccaacgccaccgtcggcctctccaaaactttcgtcaaactgaaggagcagggcaaggttgcattaatcccttacattactgccggtgatcctgatctatcggtcaccgcagacgcattgaaggtcctggattcttgtggatcggacataattgaattaggtgtgccatactctgatccattagcagatgggccagttatacaggctgcagccactcgtgccttggcaagagggaccaatttggattcaatcctggcaatgttgaaggaggtacctttacatgcaatcttttattatccgaccaatttcttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

149

Amino Acids

15.73

Weight (kDa)

8.91

Isoelectric Point (pI)

33.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54640
fragaria_vesca	FvH4_2g22570
malus_domestica	MD05G1206300.v1.1 MD10G1193300.v1.1
prunus_persica	Prupe.8G232700_v2.0.a1
pyrus_communis	pycom05g19230 pycom10g16710
rosa_chinensis	RchiOBHm_Chr3g0488871 RchiOBHm_Chr6g0284041 RchiOBHm_Chr6g0289611
rosa_laevigata	RLG00000012288 RLG00000026432
rosa_multiflora	Rmu_co8332575.1_g000001 Rmu_sc0000607.1_g000042 Rmu_sc0001527.1_g000067 Rmu_sc0001850.1_g000026 Rmu_sc0005376.1_g000002
rosa_roxburghii	Rroxscaffold_1G00026080 Rroxscaffold_7G00177810
rosa_rugosa	Rorug06G0205100
rosa_samantha	Rh5AG506400 Rh6BG323300 Rh6CG329700 Rh6DG267800 Rh6DG315100
rosa_wichuraiana	Rw6G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	406
AccB1I	GGYRCC	1 cut(s)	406
AciI	CCGC	1 cut(s)	243
AclWI	GGATC	3 cut(s)	218, 283, 305
AcsI	RAATTY	1 cut(s)	107
AcuI	CTGAAG	2 cut(s)	20, 197
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	5 cut(s)	103, 256, 290, 384, 400
AjnI	CCWGG	2 cut(s)	261, 387
AlwI	GGATC	3 cut(s)	218, 283, 305
AoxI	GGCC	2 cut(s)	151, 326
ApeKI	GCWGC	2 cut(s)	341, 344
ApoI	RAATTY	1 cut(s)	107
ArsI	GACNNNNNNTTYG	2 cut(s)	153, 185
AseI	ATTAAT	1 cut(s)	200
Asp718I	GGTACC	1 cut(s)	406
AspS9I	GGNCC	3 cut(s)	259, 326, 369
AsuHPI	GGTGA	3 cut(s)	52, 232, 233
AvaII	GGWCC	2 cut(s)	259, 369
BanI	GGYRCC	1 cut(s)	406
BauI	CACGAG	1 cut(s)	351
BbvI	GCAGC	2 cut(s)	328, 356
BccI	CCATC	1 cut(s)	317
BceAI	ACGGC	1 cut(s)	54
BciT130I	CCWGG	2 cut(s)	263, 389
BfmI	CTRYAG	1 cut(s)	342
BisI	GCNGC	2 cut(s)	342, 345
BlsI	GCNGC	2 cut(s)	343, 346
Bme1390I	CCNGG	2 cut(s)	263, 389
Bme18I	GGWCC	2 cut(s)	259, 369
BmgT120I	GGNCC	3 cut(s)	259, 326, 369
BmiI	GGNNCC	2 cut(s)	370, 408
BmrFI	CCNGG	2 cut(s)	263, 389
BmrI	ACTGGG	1 cut(s)	53
BmuI	ACTGGG	1 cut(s)	53
BsaBI	GATNNNNATC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	3 cut(s)	31, 59, 329
Bse3DI	GCAATG	1 cut(s)	399
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	2 cut(s)	263, 389
BseDI	CCNNGG	1 cut(s)	357
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	399
BseNI	ACTGG	3 cut(s)	31, 59, 329
BseXI	GCAGC	2 cut(s)	328, 356
BshFI	GGCC	2 cut(s)	153, 328
BshNI	GGYRCC	1 cut(s)	406
BsiSI	CCGG	2 cut(s)	77, 219
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	2 cut(s)	153, 328
Bsp143I	GATC	4 cut(s)	223, 229, 275, 310
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	2 cut(s)	153, 328
BspLI	GGNNCC	2 cut(s)	370, 408
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	3 cut(s)	218, 283, 305
BspT107I	GGYRCC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	399
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	3 cut(s)	31, 59, 329
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	4 cut(s)	223, 229, 275, 310
BssSI	CACGAG	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	357
Bst2BI	CACGAG	1 cut(s)	351
Bst2UI	CCWGG	2 cut(s)	263, 389
Bst4CI	ACNGT	1 cut(s)	148
BstEII	GGTNACC	1 cut(s)	238
BstKTI	GATC	4 cut(s)	226, 232, 278, 313
BstMBI	GATC	4 cut(s)	223, 229, 275, 310
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNI	CCWGG	2 cut(s)	263, 389
BstNSI	RCATGY	1 cut(s)	419
BstPI	GGTNACC	1 cut(s)	238
BstSCI	CCNGG	2 cut(s)	261, 387
BstSFI	CTRYAG	1 cut(s)	342
BstV1I	GCAGC	2 cut(s)	328, 356
BsuRI	GGCC	2 cut(s)	153, 328
BtsIMutI	CAGTG	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	3 cut(s)	259, 326, 369
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	1 cut(s)	416
CviJI	RGCY	8 cut(s)	5, 57, 80, 122, 153, 328, 341, 347
CviKI_1	RGCY	8 cut(s)	5, 57, 80, 122, 153, 328, 341, 347
CviQI	GTAC	1 cut(s)	407
DpnI	GATC	4 cut(s)	225, 231, 277, 312
DpnII	GATC	4 cut(s)	223, 229, 275, 310
Eco130I	CCWWGG	1 cut(s)	357
Eco47I	GGWCC	2 cut(s)	259, 369
Eco57I	CTGAAG	2 cut(s)	20, 197
Eco91I	GGTNACC	1 cut(s)	238
EcoO109I	RGGNCCY	1 cut(s)	259
EcoO65I	GGTNACC	1 cut(s)	238
EcoRII	CCWGG	2 cut(s)	261, 387
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	1 cut(s)	419
FaiI	YATR	4 cut(s)	284, 304, 335, 417
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	1 cut(s)	415
Fnu4HI	GCNGC	2 cut(s)	342, 345
Fsp4HI	GCNGC	2 cut(s)	342, 345
GluI	GCNGC	2 cut(s)	342, 345
HaeIII	GGCC	2 cut(s)	153, 328
HapII	CCGG	2 cut(s)	77, 219
HgaI	GACGC	1 cut(s)	257
Hin1II	CATG	1 cut(s)	419
HinfI	GANTC	2 cut(s)	266, 380
HpaII	CCGG	2 cut(s)	77, 219
HphI	GGTGA	3 cut(s)	52, 232, 233
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	4 cut(s)	129, 280, 310, 435
Hpy188III	TCNNGA	2 cut(s)	103, 227
Hpy8I	GTNNAC	1 cut(s)	90
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	3 cut(s)	172, 250, 394
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	3 cut(s)	197, 344, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
Hsp92II	CATG	1 cut(s)	419
KpnI	GGTACC	1 cut(s)	410
Kzo9I	GATC	4 cut(s)	223, 229, 275, 310
LmnI	GCTCC	1 cut(s)	181
Lsp1109I	GCAGC	2 cut(s)	328, 356
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	4 cut(s)	225, 231, 277, 312
MboI	GATC	4 cut(s)	223, 229, 275, 310
MboII	GAAGA	2 cut(s)	26, 55
MluCI	AATT	5 cut(s)	107, 285, 290, 373, 439
MnlI	CCTC	4 cut(s)	60, 164, 359, 397
MseI	TTAA	2 cut(s)	15, 200
MspI	CCGG	2 cut(s)	77, 219
MspR9I	CCNGG	2 cut(s)	263, 389
MvaI	CCWGG	2 cut(s)	263, 389
MwoI	GCNNNNNNNGC	1 cut(s)	353
NdeII	GATC	4 cut(s)	223, 229, 275, 310
NlaIII	CATG	1 cut(s)	419
NlaIV	GGNNCC	2 cut(s)	370, 408
NmuCI	GTSAC	1 cut(s)	238
NspI	RCATGY	1 cut(s)	419
PfeI	GAWTC	2 cut(s)	266, 380
PfoI	TCCNGGA	1 cut(s)	261
PkrI	GCNGC	2 cut(s)	343, 346
PpuMI	RGGWCCY	1 cut(s)	259
PshBI	ATTAAT	1 cut(s)	200
Psp5II	RGGWCCY	1 cut(s)	259
Psp6I	CCWGG	2 cut(s)	261, 387
PspEI	GGTNACC	1 cut(s)	238
PspGI	CCWGG	2 cut(s)	261, 387
PspN4I	GGNNCC	2 cut(s)	370, 408
PspPI	GGNCC	3 cut(s)	259, 326, 369
PspPPI	RGGWCCY	1 cut(s)	259
PstI	CTGCAG	1 cut(s)	346
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
SaqAI	TTAA	2 cut(s)	15, 200
SatI	GCNGC	2 cut(s)	342, 345
Sau3AI	GATC	4 cut(s)	223, 229, 275, 310
Sau96I	GGNCC	3 cut(s)	259, 326, 369
ScrFI	CCNGG	2 cut(s)	263, 389
SetI	ASST	6 cut(s)	42, 195, 261, 298, 408, 412
SfcI	CTRYAG	1 cut(s)	342
SinI	GGWCC	2 cut(s)	259, 369
Sse9I	AATT	5 cut(s)	107, 285, 290, 373, 439
SsiI	CCGC	1 cut(s)	243
StyD4I	CCNGG	2 cut(s)	261, 387
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	148
TaqII	GACCGA	1 cut(s)	226
TasI	AATT	5 cut(s)	107, 285, 290, 373, 439
TfiI	GAWTC	2 cut(s)	266, 380
Tru1I	TTAA	2 cut(s)	15, 200
Tru9I	TTAA	2 cut(s)	15, 200
TscAI	CASTG	1 cut(s)	66
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	2 cut(s)	341, 344
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	66
VpaK11BI	GGWCC	2 cut(s)	259, 369
VspI	ATTAAT	1 cut(s)	200
XapI	RAATTY	1 cut(s)	107
XceI	RCATGY	1 cut(s)	419
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.