Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001850.1

Orthogroup ID

OG0006471

Physical Location & Seq

Genomic Coordinates Forward (+)

113082 .. 115324

Gene Structure 2243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001850.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atggcctctctgaccaccaccaacaccagcgtcggcctctccaaaactttcatcaaactgaaggagcaagacaaggttgcattaatcccttacactactgccggtgatcctgatctatcaatcaccgcagaagcattgaaggtcctggattcttgtggatcggacataattgaattaggcatgccatactctgatccattagcagctgggccagctgcagccactcgtgccttggcaagaggaactaatttgaattcaatcctggaaatagaaactggggccttatgtgcaatgaaggaagttgatctcattcctcatgatcctaaatctgcagaaagtatcaagcaatcggaaaatgcttcagttacatggcatttcttcaatgttgctggttgcctcgcggaactaaatttgataagtgattcatctgtaacgagactggtcacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

149

Amino Acids

15.68

Weight (kDa)

4.68

Isoelectric Point (pI)

27.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54640
fragaria_vesca	FvH4_2g22570
malus_domestica	MD05G1206300.v1.1 MD10G1193300.v1.1
prunus_persica	Prupe.8G232700_v2.0.a1
pyrus_communis	pycom05g19230 pycom10g16710
rosa_chinensis	RchiOBHm_Chr3g0488871 RchiOBHm_Chr6g0284041 RchiOBHm_Chr6g0289611
rosa_laevigata	RLG00000012288 RLG00000026432
rosa_multiflora	Rmu_co8332575.1_g000001 Rmu_sc0000607.1_g000042 Rmu_sc0001527.1_g000067 Rmu_sc0001850.1_g000026 Rmu_sc0005376.1_g000002
rosa_roxburghii	Rroxscaffold_1G00026080 Rroxscaffold_7G00177810
rosa_rugosa	Rorug06G0205100
rosa_samantha	Rh5AG506400 Rh6BG323300 Rh6CG329700 Rh6DG267800 Rh6DG315100
rosa_wichuraiana	Rw6G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	401
AciI	CCGC	2 cut(s)	126, 401
AclWI	GGATC	4 cut(s)	101, 166, 188, 314
AcsI	RAATTY	2 cut(s)	253, 409
AcuI	CTGAAG	2 cut(s)	80, 345
AgsI	TTSAA	5 cut(s)	139, 173, 253, 258, 382
AjnI	CCWGG	2 cut(s)	144, 261
AluBI	AGCT	2 cut(s)	206, 215
AluI	AGCT	2 cut(s)	206, 215
Alw26I	GTCTC	1 cut(s)	430
AlwI	GGATC	4 cut(s)	101, 166, 188, 314
AoxI	GGCC	4 cut(s)	3, 34, 209, 279
ApeKI	GCWGC	3 cut(s)	203, 215, 218
ApoI	RAATTY	2 cut(s)	253, 409
AseI	ATTAAT	1 cut(s)	83
AspS9I	GGNCC	3 cut(s)	142, 209, 279
AsuHPI	GGTGA	3 cut(s)	115, 116, 436
AvaII	GGWCC	1 cut(s)	142
BauI	CACGAG	1 cut(s)	225
BbvI	GCAGC	3 cut(s)	202, 215, 230
BciT130I	CCWGG	2 cut(s)	146, 263
BcoDI	GTCTC	1 cut(s)	430
BfmI	CTRYAG	2 cut(s)	216, 330
BisI	GCNGC	3 cut(s)	204, 216, 219
BlsI	GCNGC	3 cut(s)	205, 217, 220
Bme1390I	CCNGG	2 cut(s)	146, 263
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	3 cut(s)	142, 209, 279
BmiI	GGNNCC	1 cut(s)	280
BmrFI	CCNGG	2 cut(s)	146, 263
BmrI	ACTGGG	1 cut(s)	285
BmuI	ACTGGG	1 cut(s)	285
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	231
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	2 cut(s)	280, 444
Bse3DI	GCAATG	1 cut(s)	297
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	146, 263
BseDI	CCNNGG	1 cut(s)	231
BseJI	GATNNNNATC	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	297
BseNI	ACTGG	2 cut(s)	280, 444
BseXI	GCAGC	3 cut(s)	202, 215, 230
BseYI	CCCAGC	1 cut(s)	206
Bsh1236I	CGCG	1 cut(s)	401
BshFI	GGCC	4 cut(s)	5, 36, 211, 281
BsiSI	CCGG	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	430
BsnI	GGCC	4 cut(s)	5, 36, 211, 281
Bsp143I	GATC	6 cut(s)	106, 112, 158, 193, 304, 319
BspACI	CCGC	2 cut(s)	126, 401
BspANI	GGCC	4 cut(s)	5, 36, 211, 281
BspFNI	CGCG	1 cut(s)	401
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	1 cut(s)	280
BspMAI	CTGCAG	2 cut(s)	220, 334
BspPI	GGATC	4 cut(s)	101, 166, 188, 314
BsrDI	GCAATG	1 cut(s)	297
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	280, 444
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	6 cut(s)	106, 112, 158, 193, 304, 319
BssSI	CACGAG	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	231
Bst2BI	CACGAG	1 cut(s)	225
Bst2UI	CCWGG	2 cut(s)	146, 263
BstC8I	GCNNGC	2 cut(s)	182, 213
BstEII	GGTNACC	1 cut(s)	442
BstFNI	CGCG	1 cut(s)	401
BstKTI	GATC	6 cut(s)	109, 115, 161, 196, 307, 322
BstMAI	GTCTC	1 cut(s)	430
BstMBI	GATC	6 cut(s)	106, 112, 158, 193, 304, 319
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 227, 287
BstNI	CCWGG	2 cut(s)	146, 263
BstNSI	RCATGY	1 cut(s)	184
BstPI	GGTNACC	1 cut(s)	442
BstSCI	CCNGG	2 cut(s)	144, 261
BstSFI	CTRYAG	2 cut(s)	216, 330
BstUI	CGCG	1 cut(s)	401
BstV1I	GCAGC	3 cut(s)	202, 215, 230
BsuRI	GGCC	4 cut(s)	5, 36, 211, 281
Cac8I	GCNNGC	2 cut(s)	182, 213
CciI	TCATGA	1 cut(s)	316
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	3 cut(s)	142, 209, 279
CseI	GACGC	1 cut(s)	19
CviAII	CATG	3 cut(s)	181, 317, 369
CviJI	RGCY	7 cut(s)	5, 36, 206, 211, 215, 221, 281
CviKI_1	RGCY	7 cut(s)	5, 36, 206, 211, 215, 221, 281
DpnI	GATC	6 cut(s)	108, 114, 160, 195, 306, 321
DpnII	GATC	6 cut(s)	106, 112, 158, 193, 304, 319
Eco130I	CCWWGG	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	142
Eco57I	CTGAAG	2 cut(s)	80, 345
Eco91I	GGTNACC	1 cut(s)	442
EcoO109I	RGGNCCY	2 cut(s)	142, 279
EcoO65I	GGTNACC	1 cut(s)	442
EcoRI	GAATTC	1 cut(s)	253
EcoRII	CCWGG	2 cut(s)	144, 261
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	3 cut(s)	184, 320, 372
FaiI	YATR	6 cut(s)	167, 182, 187, 286, 318, 370
FatI	CATG	3 cut(s)	180, 316, 368
Fnu4HI	GCNGC	3 cut(s)	204, 216, 219
Fsp4HI	GCNGC	3 cut(s)	204, 216, 219
GluI	GCNGC	3 cut(s)	204, 216, 219
GsaI	CCCAGC	1 cut(s)	210
HaeIII	GGCC	4 cut(s)	5, 36, 211, 281
HapII	CCGG	1 cut(s)	102
HgaI	GACGC	1 cut(s)	19
Hin1II	CATG	3 cut(s)	184, 320, 372
HinfI	GANTC	2 cut(s)	149, 422
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	3 cut(s)	115, 116, 436
Hpy188I	TCNGA	4 cut(s)	12, 163, 193, 352
Hpy188III	TCNNGA	2 cut(s)	110, 317
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	3 cut(s)	55, 133, 289
HpyCH4V	TGCA	4 cut(s)	80, 218, 290, 332
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 227, 287
Hsp92II	CATG	3 cut(s)	184, 320, 372
Kzo9I	GATC	6 cut(s)	106, 112, 158, 193, 304, 319
LmnI	GCTCC	1 cut(s)	64
Lsp1109I	GCAGC	3 cut(s)	202, 215, 230
MaeIII	GTNAC	3 cut(s)	364, 430, 442
MalI	GATC	6 cut(s)	108, 114, 160, 195, 306, 321
MboI	GATC	6 cut(s)	106, 112, 158, 193, 304, 319
MboII	GAAGA	1 cut(s)	370
MluCI	AATT	5 cut(s)	168, 173, 247, 253, 409
MnlI	CCTC	5 cut(s)	16, 47, 233, 324, 407
MseI	TTAA	1 cut(s)	83
MspA1I	CMGCKG	2 cut(s)	206, 215
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	2 cut(s)	146, 263
MvaI	CCWGG	2 cut(s)	146, 263
MvnI	CGCG	1 cut(s)	401
MwoI	GCNNNNNNNGC	3 cut(s)	212, 227, 287
NdeII	GATC	6 cut(s)	106, 112, 158, 193, 304, 319
NlaIII	CATG	3 cut(s)	184, 320, 372
NlaIV	GGNNCC	1 cut(s)	280
NmuCI	GTSAC	1 cut(s)	442
NspI	RCATGY	1 cut(s)	184
PaeI	GCATGC	1 cut(s)	184
PagI	TCATGA	1 cut(s)	316
PfeI	GAWTC	2 cut(s)	149, 422
PfoI	TCCNGGA	2 cut(s)	144, 261
PkrI	GCNGC	3 cut(s)	205, 217, 220
PpuMI	RGGWCCY	1 cut(s)	142
PshBI	ATTAAT	1 cut(s)	83
Psp5II	RGGWCCY	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	144, 261
PspEI	GGTNACC	1 cut(s)	442
PspFI	CCCAGC	1 cut(s)	206
PspGI	CCWGG	2 cut(s)	144, 261
PspN4I	GGNNCC	1 cut(s)	280
PspPI	GGNCC	3 cut(s)	142, 209, 279
PspPPI	RGGWCCY	1 cut(s)	142
PstI	CTGCAG	2 cut(s)	220, 334
PvuII	CAGCTG	2 cut(s)	206, 215
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	3 cut(s)	204, 216, 219
Sau3AI	GATC	6 cut(s)	106, 112, 158, 193, 304, 319
Sau96I	GGNCC	3 cut(s)	142, 209, 279
ScrFI	CCNGG	2 cut(s)	146, 263
SetI	ASST	5 cut(s)	78, 144, 208, 217, 449
SfcI	CTRYAG	2 cut(s)	216, 330
SinI	GGWCC	1 cut(s)	142
SphI	GCATGC	1 cut(s)	184
Sse9I	AATT	5 cut(s)	168, 173, 247, 253, 409
SsiI	CCGC	2 cut(s)	126, 401
StyD4I	CCNGG	2 cut(s)	144, 261
StyI	CCWWGG	1 cut(s)	231
TasI	AATT	5 cut(s)	168, 173, 247, 253, 409
TfiI	GAWTC	2 cut(s)	149, 422
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	3 cut(s)	203, 215, 218
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	3 cut(s)	40, 308, 414
VpaK11BI	GGWCC	1 cut(s)	142
VspI	ATTAAT	1 cut(s)	83
XapI	RAATTY	2 cut(s)	253, 409
XceI	RCATGY	1 cut(s)	184
XcmI	CCANNNNNNNNNTGG	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.