Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000607.1

Orthogroup ID

OG0006471

Physical Location & Seq

Genomic Coordinates Reverse (-)

210825 .. 211733

Gene Structure 909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000607.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atggcttctctgaccaccaccaacaccagcatcggcctctccaaaactttcatcaaactgaaggagcaagacaaggttgaattaatctcttacactactgtcggtgatcctgatctatcagtcaccgcagaagcattgaaggtcctggattcttgtggatcggctgcagccactcgtgccttggcaagagggaccaatttgaattcaatcctggcaatgttgaaggagctacctttacatgcaatcttttattatctgaccaatctcttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

90

Amino Acids

9.66

Weight (kDa)

6.54

Isoelectric Point (pI)

12.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54640
fragaria_vesca	FvH4_2g22570
malus_domestica	MD05G1206300.v1.1 MD10G1193300.v1.1
prunus_persica	Prupe.8G232700_v2.0.a1
pyrus_communis	pycom05g19230 pycom10g16710
rosa_chinensis	RchiOBHm_Chr3g0488871 RchiOBHm_Chr6g0284041 RchiOBHm_Chr6g0289611
rosa_laevigata	RLG00000012288 RLG00000026432
rosa_multiflora	Rmu_co8332575.1_g000001 Rmu_sc0000607.1_g000042 Rmu_sc0001527.1_g000067 Rmu_sc0001850.1_g000026 Rmu_sc0005376.1_g000002
rosa_roxburghii	Rroxscaffold_1G00026080 Rroxscaffold_7G00177810
rosa_rugosa	Rorug06G0205100
rosa_samantha	Rh5AG506400 Rh6BG323300 Rh6CG329700 Rh6DG267800 Rh6DG315100
rosa_wichuraiana	Rw6G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	126
AclWI	GGATC	2 cut(s)	101, 166
AcsI	RAATTY	1 cut(s)	202
AcuI	CTGAAG	1 cut(s)	80
AgsI	TTSAA	5 cut(s)	80, 139, 202, 207, 223
AjnI	CCWGG	2 cut(s)	144, 210
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
AlwI	GGATC	2 cut(s)	101, 166
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	164, 167
ApoI	RAATTY	1 cut(s)	202
AseI	ATTAAT	1 cut(s)	83
AspS9I	GGNCC	2 cut(s)	142, 192
AsuHPI	GGTGA	2 cut(s)	115, 116
AvaII	GGWCC	2 cut(s)	142, 192
BauI	CACGAG	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	151, 179
BciT130I	CCWGG	2 cut(s)	146, 212
BfmI	CTRYAG	1 cut(s)	165
BisI	GCNGC	2 cut(s)	165, 168
BlsI	GCNGC	2 cut(s)	166, 169
Bme1390I	CCNGG	2 cut(s)	146, 212
Bme18I	GGWCC	2 cut(s)	142, 192
BmgT120I	GGNCC	2 cut(s)	142, 192
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	2 cut(s)	146, 212
BmsI	GCATC	1 cut(s)	39
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	222
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	146, 212
BseDI	CCNNGG	1 cut(s)	180
BseJI	GATNNNNATC	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	222
BseXI	GCAGC	2 cut(s)	151, 179
BshFI	GGCC	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	36
Bsp143I	GATC	3 cut(s)	106, 112, 158
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	193
BspMAI	CTGCAG	1 cut(s)	169
BspPI	GGATC	2 cut(s)	101, 166
BsrDI	GCAATG	1 cut(s)	222
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	3 cut(s)	106, 112, 158
BssSI	CACGAG	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	180
Bst2BI	CACGAG	1 cut(s)	174
Bst2UI	CCWGG	2 cut(s)	146, 212
Bst4CI	ACNGT	1 cut(s)	100
BstKTI	GATC	3 cut(s)	109, 115, 161
BstMBI	GATC	3 cut(s)	106, 112, 158
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNI	CCWGG	2 cut(s)	146, 212
BstNSI	RCATGY	1 cut(s)	242
BstSCI	CCNGG	2 cut(s)	144, 210
BstSFI	CTRYAG	1 cut(s)	165
BstV1I	GCAGC	2 cut(s)	151, 179
BsuRI	GGCC	1 cut(s)	36
Cfr13I	GGNCC	2 cut(s)	142, 192
CviAII	CATG	1 cut(s)	239
CviJI	RGCY	5 cut(s)	5, 36, 164, 170, 229
CviKI_1	RGCY	5 cut(s)	5, 36, 164, 170, 229
DpnI	GATC	3 cut(s)	108, 114, 160
DpnII	GATC	3 cut(s)	106, 112, 158
Eco130I	CCWWGG	1 cut(s)	180
Eco47I	GGWCC	2 cut(s)	142, 192
Eco57I	CTGAAG	1 cut(s)	80
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRI	GAATTC	1 cut(s)	202
EcoRII	CCWGG	2 cut(s)	144, 210
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	1 cut(s)	242
FaiI	YATR	1 cut(s)	240
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	1 cut(s)	238
Fnu4HI	GCNGC	2 cut(s)	165, 168
Fsp4HI	GCNGC	2 cut(s)	165, 168
GluI	GCNGC	2 cut(s)	165, 168
HaeIII	GGCC	1 cut(s)	36
Hin1II	CATG	1 cut(s)	242
HinfI	GANTC	1 cut(s)	149
HphI	GGTGA	2 cut(s)	115, 116
Hpy188I	TCNGA	2 cut(s)	12, 258
Hpy188III	TCNNGA	1 cut(s)	110
HpyAV	CCTTC	3 cut(s)	55, 133, 217
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	2 cut(s)	167, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
Hsp92II	CATG	1 cut(s)	242
Kzo9I	GATC	3 cut(s)	106, 112, 158
LmnI	GCTCC	2 cut(s)	64, 226
LpnPI	CCDG	6 cut(s)	40, 123, 131, 158, 197, 224
Lsp1109I	GCAGC	2 cut(s)	151, 179
LweI	GCATC	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	3 cut(s)	108, 114, 160
MboI	GATC	3 cut(s)	106, 112, 158
MluCI	AATT	3 cut(s)	80, 196, 202
MnlI	CCTC	2 cut(s)	47, 182
MseI	TTAA	1 cut(s)	83
MspR9I	CCNGG	2 cut(s)	146, 212
MvaI	CCWGG	2 cut(s)	146, 212
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	3 cut(s)	106, 112, 158
NlaIII	CATG	1 cut(s)	242
NlaIV	GGNNCC	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	121
NspI	RCATGY	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	149
PfoI	TCCNGGA	1 cut(s)	144
PkrI	GCNGC	2 cut(s)	166, 169
PpuMI	RGGWCCY	1 cut(s)	142
PshBI	ATTAAT	1 cut(s)	83
Psp5II	RGGWCCY	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	144, 210
PspGI	CCWGG	2 cut(s)	144, 210
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	2 cut(s)	142, 192
PspPPI	RGGWCCY	1 cut(s)	142
PstI	CTGCAG	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	2 cut(s)	165, 168
Sau3AI	GATC	3 cut(s)	106, 112, 158
Sau96I	GGNCC	2 cut(s)	142, 192
ScrFI	CCNGG	2 cut(s)	146, 212
SetI	ASST	4 cut(s)	78, 144, 231, 235
SfaNI	GCATC	1 cut(s)	39
SfcI	CTRYAG	1 cut(s)	165
SinI	GGWCC	2 cut(s)	142, 192
Sse9I	AATT	3 cut(s)	80, 196, 202
SsiI	CCGC	1 cut(s)	126
StyD4I	CCNGG	2 cut(s)	144, 210
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	100
TasI	AATT	3 cut(s)	80, 196, 202
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	2 cut(s)	164, 167
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	40
VpaK11BI	GGWCC	2 cut(s)	142, 192
VspI	ATTAAT	1 cut(s)	83
XapI	RAATTY	1 cut(s)	202
XceI	RCATGY	1 cut(s)	242
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.