Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006471

Physical Location & Seq

Genomic Coordinates Reverse (-)

47305726 .. 47307418

Gene Structure 1693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25472

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCCTTCGTCATTTCAGCCGTCAAGCTATGCGAGCTCTCTCAGTACGTCAGACTGCTGGTGGTAGGCGTTGGTGGGTTGGGTTGTGAATTGCTCAAGGACTTGGCTTTGTCTGGCTTCCAAGAAATCGAAGTCATCGACATGGATCTCCCTGAGGTCTCTAACCTCAATCGACAGTTTCTCTTCAGTTGGAGTATCGGGCTCGTGGTCAACTGGTCTTGCTCTTGGAGTCTTAGTTCAATTCAGAAATCTTCAAGCTCGGATGGGAGTGTTTCATTAATCCCTTACACTACTGTCGGTGATCCTGATCTATCAGTCACCGCAGAAGCATTGAAGGTCCTCGATTCTTGTGGATCAGACATAATTGAATTAGGCGTGCCATACTCTGATCCATTAGCAGCTGGACCAGTTATACAGGCTGCAGCCACTCGTGCCTTGGCAAGATGGACCAATTTGAATTCAATCCTGGCAATGTTGAAGGCGGTACCTTTGCATGCAATCTTTTATTATCTGACCAATCTCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

175

Amino Acids

18.78

Weight (kDa)

4.47

Isoelectric Point (pI)

32.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ThiF	PF00899	17 - 63	2.1e-17	ThiF family
Trp_syntA	PF00290	89 - 162	2.1e-24	Tryptophan synthase alpha chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54640
fragaria_vesca	FvH4_2g22570
malus_domestica	MD05G1206300.v1.1 MD10G1193300.v1.1
prunus_persica	Prupe.8G232700_v2.0.a1
pyrus_communis	pycom05g19230 pycom10g16710
rosa_chinensis	RchiOBHm_Chr3g0488871 RchiOBHm_Chr6g0284041 RchiOBHm_Chr6g0289611
rosa_laevigata	RLG00000012288 RLG00000026432
rosa_multiflora	Rmu_co8332575.1_g000001 Rmu_sc0000607.1_g000042 Rmu_sc0001527.1_g000067 Rmu_sc0001850.1_g000026 Rmu_sc0005376.1_g000002
rosa_roxburghii	Rroxscaffold_1G00026080 Rroxscaffold_7G00177810
rosa_rugosa	Rorug06G0205100
rosa_samantha	Rh5AG506400 Rh6BG323300 Rh6CG329700 Rh6DG267800 Rh6DG315100
rosa_wichuraiana	Rw6G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	484
AccB1I	GGYRCC	1 cut(s)	484
AciI	CCGC	2 cut(s)	321, 482
AclWI	GGATC	4 cut(s)	153, 296, 361, 383
AcsI	RAATTY	1 cut(s)	457
AcuI	CTGAAG	1 cut(s)	169
AfaI	GTAC	2 cut(s)	47, 486
AgsI	TTSAA	7 cut(s)	240, 255, 334, 368, 457, 462, 478
AjnI	CCWGG	1 cut(s)	465
AloI	GAACNNNNNNTCC	2 cut(s)	220, 252
AluBI	AGCT	4 cut(s)	28, 37, 258, 401
AluI	AGCT	4 cut(s)	28, 37, 258, 401
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	4 cut(s)	153, 296, 361, 383
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	398, 419, 422
ApoI	RAATTY	1 cut(s)	457
AseI	ATTAAT	1 cut(s)	278
Asp718I	GGTACC	1 cut(s)	484
AspS9I	GGNCC	3 cut(s)	337, 404, 447
AsuHPI	GGTGA	2 cut(s)	310, 311
AvaII	GGWCC	3 cut(s)	337, 404, 447
AxyI	CCTNAGG	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	484
BanII	GRGCYC	2 cut(s)	39, 204
BauI	CACGAG	2 cut(s)	203, 429
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	3 cut(s)	406, 410, 434
BccI	CCATC	2 cut(s)	257, 438
BceAI	ACGGC	1 cut(s)	5
BciT130I	CCWGG	1 cut(s)	467
BcoDI	GTCTC	1 cut(s)	163
BfmI	CTRYAG	1 cut(s)	420
BisI	GCNGC	3 cut(s)	399, 420, 423
BlsI	GCNGC	3 cut(s)	400, 421, 424
Bme1390I	CCNGG	1 cut(s)	467
Bme18I	GGWCC	3 cut(s)	337, 404, 447
BmgT120I	GGNCC	3 cut(s)	337, 404, 447
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	1 cut(s)	467
BpuEI	CTTGAG	1 cut(s)	80
BsaBI	GATNNNNATC	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	435
BsaXI	ACNNNNNCTCC	2 cut(s)	220, 250
Bse1I	ACTGG	2 cut(s)	218, 407
Bse21I	CCTNAGG	1 cut(s)	153
Bse3DI	GCAATG	1 cut(s)	477
Bse8I	GATNNNNATC	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	467
BseDI	CCNNGG	1 cut(s)	435
BseGI	GGATG	1 cut(s)	268
BseJI	GATNNNNATC	1 cut(s)	306
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	2 cut(s)	56, 144
BseNI	ACTGG	2 cut(s)	218, 407
BseXI	GCAGC	3 cut(s)	406, 410, 434
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	484
BsiHKAI	GWGCWC	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	163
Bsp1286I	GDGCHC	2 cut(s)	39, 204
Bsp143I	GATC	5 cut(s)	145, 301, 307, 353, 388
BspACI	CCGC	2 cut(s)	321, 482
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	55, 145
BspLI	GGNNCC	1 cut(s)	486
BspMAI	CTGCAG	1 cut(s)	424
BspPI	GGATC	4 cut(s)	153, 296, 361, 383
BspT107I	GGYRCC	1 cut(s)	484
BspTNI	GGTCTC	1 cut(s)	163
BsrDI	GCAATG	1 cut(s)	477
BsrI	ACTGG	2 cut(s)	218, 407
BssECI	CCNNGG	1 cut(s)	435
BssMI	GATC	5 cut(s)	145, 301, 307, 353, 388
BssSI	CACGAG	2 cut(s)	203, 429
BssT1I	CCWWGG	1 cut(s)	435
Bst2BI	CACGAG	2 cut(s)	203, 429
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	2 cut(s)	177, 295
Bst6I	CTCTTC	1 cut(s)	188
BstC8I	GCNNGC	3 cut(s)	35, 377, 495
BstDEI	CTNAG	3 cut(s)	42, 153, 233
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	5 cut(s)	148, 304, 310, 356, 391
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	5 cut(s)	145, 301, 307, 353, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 431
BstNI	CCWGG	1 cut(s)	467
BstNSI	RCATGY	1 cut(s)	497
BstSCI	CCNGG	1 cut(s)	465
BstSFI	CTRYAG	1 cut(s)	420
BstV1I	GCAGC	3 cut(s)	406, 410, 434
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
Bsu36I	CCTNAGG	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	268
Cac8I	GCNNGC	3 cut(s)	35, 377, 495
Cfr13I	GGNCC	3 cut(s)	337, 404, 447
Csp6I	GTAC	2 cut(s)	46, 485
CviAII	CATG	2 cut(s)	142, 494
CviQI	GTAC	2 cut(s)	46, 485
DdeI	CTNAG	3 cut(s)	42, 153, 233
DpnI	GATC	5 cut(s)	147, 303, 309, 355, 390
DpnII	GATC	5 cut(s)	145, 301, 307, 353, 388
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	435
Eco24I	GRGCYC	2 cut(s)	39, 204
Eco31I	GGTCTC	1 cut(s)	163
Eco47I	GGWCC	3 cut(s)	337, 404, 447
Eco53kI	GAGCTC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	169
Eco81I	CCTNAGG	1 cut(s)	153
EcoICRI	GAGCTC	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRI	GAATTC	1 cut(s)	457
EcoRII	CCWGG	1 cut(s)	465
EcoT14I	CCWWGG	1 cut(s)	435
EcoT38I	GRGCYC	2 cut(s)	39, 204
ErhI	CCWWGG	1 cut(s)	435
FaeI	CATG	2 cut(s)	145, 497
FaiI	YATR	6 cut(s)	31, 143, 362, 382, 413, 495
FatI	CATG	2 cut(s)	141, 493
Fnu4HI	GCNGC	3 cut(s)	399, 420, 423
FokI	GGATG	1 cut(s)	275
FriOI	GRGCYC	2 cut(s)	39, 204
Fsp4HI	GCNGC	3 cut(s)	399, 420, 423
GluI	GCNGC	3 cut(s)	399, 420, 423
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	145, 497
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	2 cut(s)	229, 344
HphI	GGTGA	2 cut(s)	310, 311
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	6 cut(s)	53, 246, 262, 358, 388, 513
Hpy188III	TCNNGA	1 cut(s)	305
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	3 cut(s)	16, 328, 472
HpyCH4III	ACNGT	2 cut(s)	177, 295
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	3 cut(s)	422, 493, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 431
HpyF3I	CTNAG	3 cut(s)	42, 153, 233
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	145, 497
KpnI	GGTACC	1 cut(s)	488
Kzo9I	GATC	5 cut(s)	145, 301, 307, 353, 388
Lsp1109I	GCAGC	3 cut(s)	406, 410, 434
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	5 cut(s)	147, 303, 309, 355, 390
MboI	GATC	5 cut(s)	145, 301, 307, 353, 388
MboII	GAAGA	2 cut(s)	175, 243
MflI	RGATCY	1 cut(s)	145
MhlI	GDGCHC	2 cut(s)	39, 204
MluCI	AATT	6 cut(s)	89, 240, 363, 368, 451, 457
MlyI	GAGTC	1 cut(s)	238
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	3 cut(s)	148, 176, 350
MseI	TTAA	1 cut(s)	278
MslI	CAYNNNNRTG	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	401
MspR9I	CCNGG	1 cut(s)	467
MvaI	CCWGG	1 cut(s)	467
MwoI	GCNNNNNNNGC	2 cut(s)	34, 431
NdeII	GATC	5 cut(s)	145, 301, 307, 353, 388
NlaIII	CATG	2 cut(s)	145, 497
NlaIV	GGNNCC	1 cut(s)	486
NmuCI	GTSAC	1 cut(s)	316
NspI	RCATGY	1 cut(s)	497
PaeI	GCATGC	1 cut(s)	497
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	344
PkrI	GCNGC	3 cut(s)	400, 421, 424
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
PpuMI	RGGWCCY	1 cut(s)	337
PshBI	ATTAAT	1 cut(s)	278
Psp124BI	GAGCTC	1 cut(s)	39
Psp5II	RGGWCCY	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	465
PspGI	CCWGG	1 cut(s)	465
PspN4I	GGNNCC	1 cut(s)	486
PspPI	GGNCC	3 cut(s)	337, 404, 447
PspPPI	RGGWCCY	1 cut(s)	337
PstI	CTGCAG	1 cut(s)	424
PsuI	RGATCY	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	2 cut(s)	47, 486
RsaNI	GTAC	2 cut(s)	46, 485
RseI	CAYNNNNRTG	1 cut(s)	140
SacI	GAGCTC	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	3 cut(s)	399, 420, 423
Sau3AI	GATC	5 cut(s)	145, 301, 307, 353, 388
Sau96I	GGNCC	3 cut(s)	337, 404, 447
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	467
SduI	GDGCHC	2 cut(s)	39, 204
SetI	ASST	9 cut(s)	30, 39, 51, 159, 168, 260, 339, 403, 490
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	3 cut(s)	337, 404, 447
SmiMI	CAYNNNNRTG	1 cut(s)	140
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SphI	GCATGC	1 cut(s)	497
Sse9I	AATT	6 cut(s)	89, 240, 363, 368, 451, 457
SsiI	CCGC	2 cut(s)	321, 482
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	465
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	2 cut(s)	177, 295
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	4 cut(s)	129, 138, 172, 342
TasI	AATT	6 cut(s)	89, 240, 363, 368, 451, 457
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	3 cut(s)	398, 419, 422
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	264
VpaK11BI	GGWCC	3 cut(s)	337, 404, 447
VspI	ATTAAT	1 cut(s)	278
XapI	RAATTY	1 cut(s)	457
XceI	RCATGY	1 cut(s)	497
XcmI	CCANNNNNNNNNTGG	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.