Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006471

Physical Location & Seq

Genomic Coordinates Forward (+)

51016640 .. 51020103

Gene Structure 3464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G027310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCTTCTTCTCTTAAATCGCGACTGTCCACCCTTTCATTCAAGAAATTTACTCCAATGGCTTCTCTGACCACCACCAACGCCACCGTCGGCCTCTCCAAAACTTTCATCAAACTGAAGGAGCAGGGCAAGGTTGCATTAATCCCTTACATTACTGCCGGTGATCCTGATCTATTGGTCACCGCAGAAGCATTGAAGGTCCTGGATTCTTGTGGATCGGACATAATTGAATTAGGTGTGCCATACTCTGATCCATTAGCAGATGGGCCAGTTATACAGGCTGCAGCCACTCGTGCCTTGGCAAGAGGGACCAATTTGGATTCAATCCTGGCAATGTTGAAGGAGGTGATTCCCAAACTGTCCTGCCCAATTGCTCTCTTCACATACTACAATCCCATTTTGAAGCGTGGTGTTGGAGAGTTCATGTCCATCATTAAAGACGTCGGGGTACACGGACTTGTGGTTCCAGATGTTCCATTGGAAGAGACGGACACTCTGAGAAAGGAAGCCTTGAAAAATAATATTGAATTGGTATTACTAACTACACCCACCACTCCAATGGAGCGAATGAAGGCCATTGCTGAAGCTTCCGAAGGATTTTTGTACCTGGTGAGCTCAATTGGAGTTACAGGGGCCCGGGCATCTGTGAATGAACGAGTTCCTGCCCTTTTAAAGGAAATTAAAGAGGCTACATCAAAGCCCGTAGCTGTTGGTTTTGGCATCTCGAAGCCTGAACAAGCTAAACAGGTAGCGGGGTGGGGAGCTGATGGTGTCATTGTTGGTAGCGCAATGGTGAAGCTGTTGGGTGATGCCAAAACTCCCGAGGAAGGGTTGAAGGAACTGGAAATTTTCACCAAGTCTCTGAAATCTGCACTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

293

Amino Acids

31.08

Weight (kDa)

7.65

Isoelectric Point (pI)

24.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trp_syntA	PF00290	36 - 291	8.8e-95	Tryptophan synthase alpha chain
His_biosynth	PF00977	209 - 266	2.9e-06	Histidine biosynthesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54640
fragaria_vesca	FvH4_2g22570
malus_domestica	MD05G1206300.v1.1 MD10G1193300.v1.1
prunus_persica	Prupe.8G232700_v2.0.a1
pyrus_communis	pycom05g19230 pycom10g16710
rosa_chinensis	RchiOBHm_Chr3g0488871 RchiOBHm_Chr6g0284041 RchiOBHm_Chr6g0289611
rosa_laevigata	RLG00000012288 RLG00000026432
rosa_multiflora	Rmu_co8332575.1_g000001 Rmu_sc0000607.1_g000042 Rmu_sc0001527.1_g000067 Rmu_sc0001850.1_g000026 Rmu_sc0005376.1_g000002
rosa_roxburghii	Rroxscaffold_1G00026080 Rroxscaffold_7G00177810
rosa_rugosa	Rorug06G0205100
rosa_samantha	Rh5AG506400 Rh6BG323300 Rh6CG329700 Rh6DG267800 Rh6DG315100
rosa_wichuraiana	Rw6G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	444
AccII	CGCG	1 cut(s)	22
AciI	CCGC	2 cut(s)	183, 752
AclWI	GGATC	3 cut(s)	158, 223, 245
AcsI	RAATTY	2 cut(s)	47, 846
AcuI	CTGAAG	2 cut(s)	137, 603
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	2 cut(s)	450, 605
AfiI	CCNNNNNNNGG	3 cut(s)	673, 827, 828
AgsI	TTSAA	9 cut(s)	43, 196, 230, 324, 340, 403, 514, 527, 835
AjnI	CCWGG	3 cut(s)	201, 327, 606
AloI	GAACNNNNNNTCC	2 cut(s)	447, 479
AluBI	AGCT	6 cut(s)	587, 615, 707, 740, 764, 799
AluI	AGCT	6 cut(s)	587, 615, 707, 740, 764, 799
Alw21I	GWGCWC	1 cut(s)	617
Alw26I	GTCTC	2 cut(s)	479, 864
AlwI	GGATC	3 cut(s)	158, 223, 245
Ama87I	CYCGRG	2 cut(s)	636, 821
AoxI	GGCC	4 cut(s)	91, 266, 573, 633
ApaI	GGGCCC	1 cut(s)	637
ApeKI	GCWGC	2 cut(s)	281, 284
ApoI	RAATTY	2 cut(s)	47, 846
AseI	ATTAAT	1 cut(s)	140
Asp700I	GAANNNNTTC	1 cut(s)	657
AspLEI	GCGC	1 cut(s)	788
AspS9I	GGNCC	5 cut(s)	199, 266, 309, 633, 634
AsuC2I	CCSGG	2 cut(s)	637, 638
AsuHPI	GGTGA	7 cut(s)	172, 173, 358, 622, 805, 818, 844
AvaI	CYCGRG	2 cut(s)	636, 821
AvaII	GGWCC	2 cut(s)	199, 309
BaeGI	GKGCMC	1 cut(s)	637
BanII	GRGCYC	2 cut(s)	617, 637
BauI	CACGAG	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	617
BbvI	GCAGC	2 cut(s)	268, 296
BccI	CCATC	3 cut(s)	257, 437, 761
BciT130I	CCWGG	3 cut(s)	203, 329, 608
BcnI	CCSGG	2 cut(s)	637, 638
BcoDI	GTCTC	2 cut(s)	479, 864
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	2 cut(s)	282, 285
BlsI	GCNGC	2 cut(s)	283, 286
Bme1390I	CCNGG	5 cut(s)	203, 329, 608, 637, 638
Bme18I	GGWCC	2 cut(s)	199, 309
BmeT110I	CYCGRG	2 cut(s)	636, 821
BmgT120I	GGNCC	5 cut(s)	199, 266, 309, 633, 634
BmiI	GGNNCC	4 cut(s)	310, 465, 634, 635
BmrFI	CCNGG	5 cut(s)	203, 329, 608, 637, 638
BmsI	GCATC	3 cut(s)	650, 729, 799
BpuMI	CCSGG	2 cut(s)	637, 638
BsaBI	GATNNNNATC	1 cut(s)	168
BsaHI	GRCGYC	1 cut(s)	441
BsaJI	CCNNGG	3 cut(s)	297, 636, 822
Bsc4I	CCNNNNNNNGG	3 cut(s)	673, 827, 828
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	2 cut(s)	269, 846
Bse3DI	GCAATG	3 cut(s)	339, 576, 795
Bse8I	GATNNNNATC	1 cut(s)	168
BseBI	CCWGG	3 cut(s)	203, 329, 608
BseDI	CCNNGG	3 cut(s)	297, 636, 822
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	3 cut(s)	673, 827, 828
BseMI	GCAATG	3 cut(s)	339, 576, 795
BseMII	CTCAG	1 cut(s)	488
BseNI	ACTGG	2 cut(s)	269, 846
BseSI	GKGCMC	1 cut(s)	637
BseXI	GCAGC	2 cut(s)	268, 296
BsgI	GTGCAG	1 cut(s)	855
Bsh1236I	CGCG	1 cut(s)	22
BshFI	GGCC	4 cut(s)	93, 268, 575, 635
BsiHKAI	GWGCWC	1 cut(s)	617
BsiHKCI	CYCGRG	2 cut(s)	636, 821
BsiSI	CCGG	2 cut(s)	159, 637
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	3 cut(s)	673, 827, 828
BsmAI	GTCTC	2 cut(s)	479, 864
BsmBI	CGTCTC	1 cut(s)	479
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	4 cut(s)	93, 268, 575, 635
BsoBI	CYCGRG	2 cut(s)	636, 821
Bsp120I	GGGCCC	1 cut(s)	633
Bsp1286I	GDGCHC	2 cut(s)	617, 637
Bsp143I	GATC	4 cut(s)	163, 169, 215, 250
Bsp68I	TCGCGA	1 cut(s)	22
BspACI	CCGC	2 cut(s)	183, 752
BspANI	GGCC	4 cut(s)	93, 268, 575, 635
BspCNI	CTCAG	1 cut(s)	489
BspFNI	CGCG	1 cut(s)	22
BspLI	GGNNCC	4 cut(s)	310, 465, 634, 635
BspMAI	CTGCAG	1 cut(s)	286
BspPI	GGATC	3 cut(s)	158, 223, 245
BsrDI	GCAATG	3 cut(s)	339, 576, 795
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	2 cut(s)	269, 846
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	3 cut(s)	297, 636, 822
BssMI	GATC	4 cut(s)	163, 169, 215, 250
BssNI	GRCGYC	1 cut(s)	441
BssSI	CACGAG	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	297
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	3 cut(s)	203, 329, 608
Bst4CI	ACNGT	3 cut(s)	27, 88, 360
Bst6I	CTCTTC	2 cut(s)	383, 477
BstACI	GRCGYC	1 cut(s)	441
BstDEI	CTNAG	1 cut(s)	497
BstEII	GGTNACC	1 cut(s)	178
BstENI	CCTNNNNNAGG	1 cut(s)	671
BstFNI	CGCG	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	788
BstKTI	GATC	4 cut(s)	166, 172, 218, 253
BstMAI	GTCTC	2 cut(s)	479, 864
BstMBI	GATC	4 cut(s)	163, 169, 215, 250
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNI	CCWGG	3 cut(s)	203, 329, 608
BstPI	GGTNACC	1 cut(s)	178
BstSCI	CCNGG	5 cut(s)	201, 327, 606, 635, 636
BstSFI	CTRYAG	1 cut(s)	282
BstSLI	GKGCMC	1 cut(s)	637
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	268, 296
BstXI	CCANNNNNNTGG	1 cut(s)	559
BsuRI	GGCC	4 cut(s)	93, 268, 575, 635
BtuMI	TCGCGA	1 cut(s)	22
CfoI	GCGC	1 cut(s)	788
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	5 cut(s)	199, 266, 309, 633, 634
Cfr9I	CCCGGG	1 cut(s)	636
CsiI	ACCWGGT	1 cut(s)	606
Csp6I	GTAC	2 cut(s)	449, 604
CviAII	CATG	1 cut(s)	424
CviQI	GTAC	2 cut(s)	449, 604
DdeI	CTNAG	1 cut(s)	497
DpnI	GATC	4 cut(s)	165, 171, 217, 252
DpnII	GATC	4 cut(s)	163, 169, 215, 250
DraI	TTTAAA	1 cut(s)	672
Eam1104I	CTCTTC	2 cut(s)	383, 477
EarI	CTCTTC	2 cut(s)	383, 477
Ecl136II	GAGCTC	1 cut(s)	615
Eco130I	CCWWGG	1 cut(s)	297
Eco24I	GRGCYC	2 cut(s)	617, 637
Eco47I	GGWCC	2 cut(s)	199, 309
Eco53kI	GAGCTC	1 cut(s)	615
Eco57I	CTGAAG	2 cut(s)	137, 603
Eco88I	CYCGRG	2 cut(s)	636, 821
Eco91I	GGTNACC	1 cut(s)	178
EcoICRI	GAGCTC	1 cut(s)	615
EcoNI	CCTNNNNNAGG	1 cut(s)	671
EcoO109I	RGGNCCY	2 cut(s)	199, 633
EcoO65I	GGTNACC	1 cut(s)	178
EcoRII	CCWGG	3 cut(s)	201, 327, 606
EcoT14I	CCWWGG	1 cut(s)	297
EcoT38I	GRGCYC	2 cut(s)	617, 637
ErhI	CCWWGG	1 cut(s)	297
Esp3I	CGTCTC	1 cut(s)	479
FaeI	CATG	1 cut(s)	427
FaiI	YATR	5 cut(s)	224, 244, 275, 385, 425
FalI	AAGNNNNNCTT	2 cut(s)	494, 526
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	1 cut(s)	423
FauI	CCCGC	1 cut(s)	745
Fnu4HI	GCNGC	2 cut(s)	282, 285
FriOI	GRGCYC	2 cut(s)	617, 637
Fsp4HI	GCNGC	2 cut(s)	282, 285
GlaI	GCGC	1 cut(s)	787
GluI	GCNGC	2 cut(s)	282, 285
HaeIII	GGCC	4 cut(s)	93, 268, 575, 635
HapII	CCGG	2 cut(s)	159, 637
HhaI	GCGC	1 cut(s)	788
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	1 cut(s)	427
Hin6I	GCGC	1 cut(s)	786
HinP1I	GCGC	1 cut(s)	786
HindIII	AAGCTT	1 cut(s)	585
HinfI	GANTC	3 cut(s)	206, 320, 349
HpaII	CCGG	2 cut(s)	159, 637
HphI	GGTGA	7 cut(s)	172, 173, 358, 622, 805, 818, 844
Hpy166II	GTNNAC	2 cut(s)	30, 451
Hpy188I	TCNGA	6 cut(s)	69, 220, 250, 498, 592, 864
Hpy188III	TCNNGA	6 cut(s)	21, 43, 167, 467, 724, 821
Hpy8I	GTNNAC	2 cut(s)	30, 451
Hpy99I	CGWCG	2 cut(s)	92, 446
HpyAV	CCTTC	7 cut(s)	112, 190, 334, 565, 587, 821, 829
HpyCH4III	ACNGT	3 cut(s)	27, 88, 360
HpyCH4IV	ACGT	1 cut(s)	441
HpyCH4V	TGCA	3 cut(s)	137, 284, 872
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	1 cut(s)	497
HpySE526I	ACGT	1 cut(s)	441
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	1 cut(s)	427
HspAI	GCGC	1 cut(s)	786
Kzo9I	GATC	4 cut(s)	163, 169, 215, 250
LmnI	GCTCC	3 cut(s)	121, 562, 761
Lsp1109I	GCAGC	2 cut(s)	268, 296
LweI	GCATC	3 cut(s)	650, 729, 799
MabI	ACCWGGT	1 cut(s)	606
MaeII	ACGT	1 cut(s)	441
MaeIII	GTNAC	2 cut(s)	178, 625
MalI	GATC	4 cut(s)	165, 171, 217, 252
MboI	GATC	4 cut(s)	163, 169, 215, 250
MboII	GAAGA	2 cut(s)	370, 494
MfeI	CAATTG	2 cut(s)	369, 618
MhlI	GDGCHC	2 cut(s)	617, 637
MluCI	AATT	9 cut(s)	47, 225, 230, 313, 369, 527, 618, 678, 846
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	5 cut(s)	104, 299, 337, 679, 817
MroXI	GAANNNNTTC	1 cut(s)	657
MseI	TTAA	5 cut(s)	15, 140, 435, 671, 681
MslI	CAYNNNNRTG	1 cut(s)	557
MspI	CCGG	2 cut(s)	159, 637
MspR9I	CCNGG	5 cut(s)	203, 329, 608, 637, 638
MunI	CAATTG	2 cut(s)	369, 618
MvaI	CCWGG	3 cut(s)	203, 329, 608
MvnI	CGCG	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	293
NciI	CCSGG	2 cut(s)	637, 638
NdeII	GATC	4 cut(s)	163, 169, 215, 250
NlaIII	CATG	1 cut(s)	427
NlaIV	GGNNCC	4 cut(s)	310, 465, 634, 635
NmuCI	GTSAC	1 cut(s)	178
NruI	TCGCGA	1 cut(s)	22
PdmI	GAANNNNTTC	1 cut(s)	657
PfeI	GAWTC	3 cut(s)	206, 320, 349
PfoI	TCCNGGA	1 cut(s)	201
PkrI	GCNGC	2 cut(s)	283, 286
PpuMI	RGGWCCY	1 cut(s)	199
PshBI	ATTAAT	1 cut(s)	140
Psp124BI	GAGCTC	1 cut(s)	617
Psp5II	RGGWCCY	1 cut(s)	199
Psp6I	CCWGG	3 cut(s)	201, 327, 606
PspEI	GGTNACC	1 cut(s)	178
PspGI	CCWGG	3 cut(s)	201, 327, 606
PspN4I	GGNNCC	4 cut(s)	310, 465, 634, 635
PspOMI	GGGCCC	1 cut(s)	633
PspPI	GGNCC	5 cut(s)	199, 266, 309, 633, 634
PspPPI	RGGWCCY	1 cut(s)	199
PstI	CTGCAG	1 cut(s)	286
RruI	TCGCGA	1 cut(s)	22
RsaI	GTAC	2 cut(s)	450, 605
RsaNI	GTAC	2 cut(s)	449, 604
RseI	CAYNNNNRTG	1 cut(s)	557
SacI	GAGCTC	1 cut(s)	617
SaqAI	TTAA	5 cut(s)	15, 140, 435, 671, 681
SatI	GCNGC	2 cut(s)	282, 285
Sau3AI	GATC	4 cut(s)	163, 169, 215, 250
Sau96I	GGNCC	5 cut(s)	199, 266, 309, 633, 634
ScrFI	CCNGG	5 cut(s)	203, 329, 608, 637, 638
SduI	GDGCHC	2 cut(s)	617, 637
SexAI	ACCWGGT	1 cut(s)	606
SfaNI	GCATC	3 cut(s)	650, 729, 799
SfcI	CTRYAG	1 cut(s)	282
SinI	GGWCC	2 cut(s)	199, 309
SmaI	CCCGGG	1 cut(s)	638
SmiMI	CAYNNNNRTG	1 cut(s)	557
SrfI	GCCCGGGC	1 cut(s)	638
Sse9I	AATT	9 cut(s)	47, 225, 230, 313, 369, 527, 618, 678, 846
SsiI	CCGC	2 cut(s)	183, 752
SspI	AATATT	1 cut(s)	523
SstI	GAGCTC	1 cut(s)	617
StyD4I	CCNGG	5 cut(s)	201, 327, 606, 635, 636
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	3 cut(s)	27, 88, 360
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	1 cut(s)	725
TasI	AATT	9 cut(s)	47, 225, 230, 313, 369, 527, 618, 678, 846
TfiI	GAWTC	3 cut(s)	206, 320, 349
Tru1I	TTAA	5 cut(s)	15, 140, 435, 671, 681
Tru9I	TTAA	5 cut(s)	15, 140, 435, 671, 681
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	2 cut(s)	281, 284
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	5 cut(s)	27, 97, 412, 584, 666
TspGWI	ACGGA	2 cut(s)	468, 503
TspMI	CCCGGG	1 cut(s)	636
VpaK11BI	GGWCC	2 cut(s)	199, 309
VspI	ATTAAT	1 cut(s)	140
XagI	CCTNNNNNAGG	1 cut(s)	671
XapI	RAATTY	2 cut(s)	47, 846
XcmI	CCANNNNNNNNNTGG	2 cut(s)	295, 556
XmaI	CCCGGG	1 cut(s)	636
XmnI	GAANNNNTTC	1 cut(s)	657
ZraI	GACGTC	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.