Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006471

Physical Location & Seq

Genomic Coordinates Forward (+)

18508620 .. 18512364

Gene Structure 3745 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g22570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCTTCTTCTCTTAAATCGGCGACTGGTTTTCTTCACCTGAAGAACCCTCAAACCCCATTGCTTTTCCGGTCCCCGGCTCAAAAATCCTCCCTTTCGTTCAAGAAATTGACTCCAATGGCTTCTCTGACCACCGCCAACACCACCGTTGGCCTGGCCAAAACATTCATCAAACTCAAGGAGCAAGGCAAGGTTGCATTAATCCCTTACATTACTGCTGGTGATCCTGATCTATCAGTCACTGCAGAGGCATTGAAGGTGCTGGATTCATGTGGATCGGACATAATTGAACTAGGCGTGCCGTACTCGGATCCGTTAGCAGATGGGCCTGTTATTCAGGCCGCGGCCACTCGTGCCTTGGCAAGAGGGACTAATTTGAATGCAATCTTGGCAATGTTGAAGGAGGTGATTCCTAAACTGTCTTGCCCGATTGCTCTTTTTACATACTACAATCCTATTATGAAGCGTGGTGTTGGAGAGTTTATGTCCACCATTCAAGACGTAGGTGTACATGGACTTGTGGTTCCAGATGTCCCGTTGGAAGAGACGGTCATTTTGAGAAAGGAAGCCTTGAAAAATAATATTGAATTGGTTTTACTAACTACTCCCACCACTCCAATGGAGCGAATGAAGGCTATTGCAGAAGCCTCCGAAGGCTTTTTGTACCTGGTGAGCTCAATTGGAGTTACGGGGGCACGGGCATCTGTGAATGAACGAGTTCCTGCTCTTTTAAGGGAAATTAAAGAGGCTACATCAAAGCCGGTAGCAGTTGGTTTTGGCATTTCTAAGCCTGAACAAGCGAAACAGGTAGCGGGGTGGGGAGCTGATGGTGTAATTGTTGGTAGTGCAATCGTAAAGATCTTGGGTGATGCCAACACTCCCGAGGAAGGACTGAAGGAACTAGAAATCTTCACCAAGTCGTTGAAATCTGCACTCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

314

Amino Acids

33.15

Weight (kDa)

8.69

Isoelectric Point (pI)

28.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trp_syntA	PF00290	56 - 311	7.8e-95	Tryptophan synthase alpha chain
His_biosynth	PF00977	229 - 286	4.9e-06	Histidine biosynthesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54640
fragaria_vesca	FvH4_2g22570
malus_domestica	MD05G1206300.v1.1 MD10G1193300.v1.1
prunus_persica	Prupe.8G232700_v2.0.a1
pyrus_communis	pycom05g19230 pycom10g16710
rosa_chinensis	RchiOBHm_Chr3g0488871 RchiOBHm_Chr6g0284041 RchiOBHm_Chr6g0289611
rosa_laevigata	RLG00000012288 RLG00000026432
rosa_multiflora	Rmu_co8332575.1_g000001 Rmu_sc0000607.1_g000042 Rmu_sc0001527.1_g000067 Rmu_sc0001850.1_g000026 Rmu_sc0005376.1_g000002
rosa_roxburghii	Rroxscaffold_1G00026080 Rroxscaffold_7G00177810
rosa_rugosa	Rorug06G0205100
rosa_samantha	Rh5AG506400 Rh6BG323300 Rh6CG329700 Rh6DG267800 Rh6DG315100
rosa_wichuraiana	Rw6G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	344
AciI	CCGC	4 cut(s)	135, 342, 344, 812
AclWI	GGATC	4 cut(s)	218, 283, 305, 318
AcoI	YGGCCR	2 cut(s)	156, 345
AcuI	CTGAAG	2 cut(s)	62, 914
AfaI	GTAC	3 cut(s)	305, 510, 665
AfiI	CCNNNNNNNGG	2 cut(s)	76, 887
AgsI	TTSAA	9 cut(s)	103, 256, 290, 379, 400, 497, 574, 587, 925
AjnI	CCWGG	2 cut(s)	153, 666
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
AloI	GAACNNNNNNTCC	2 cut(s)	507, 539
AluBI	AGCT	2 cut(s)	675, 824
AluI	AGCT	2 cut(s)	675, 824
Alw21I	GWGCWC	1 cut(s)	677
Alw26I	GTCTC	1 cut(s)	539
AlwI	GGATC	4 cut(s)	218, 283, 305, 318
AlwNI	CAGNNNCTG	1 cut(s)	242
Ama87I	CYCGRG	1 cut(s)	881
AoxI	GGCC	5 cut(s)	151, 156, 326, 339, 345
ArsI	GACNNNNNNTTYG	2 cut(s)	538, 570
AseI	ATTAAT	1 cut(s)	200
Asp700I	GAANNNNTTC	1 cut(s)	717
AspS9I	GGNCC	2 cut(s)	72, 326
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	6 cut(s)	29, 233, 418, 682, 878, 904
AvaI	CYCGRG	1 cut(s)	881
AvaII	GGWCC	1 cut(s)	72
BaeGI	GKGCMC	1 cut(s)	697
BalI	TGGCCA	1 cut(s)	158
BamHI	GGATCC	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	677
BauI	CACGAG	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	677
BccI	CCATC	2 cut(s)	317, 821
BceAI	ACGGC	1 cut(s)	286
BciT130I	CCWGG	2 cut(s)	155, 668
BcnI	CCSGG	1 cut(s)	77
BcoDI	GTCTC	1 cut(s)	539
BfaI	CTAG	2 cut(s)	293, 902
BfmI	CTRYAG	1 cut(s)	243
BglII	AGATCT	1 cut(s)	858
BisI	GCNGC	2 cut(s)	342, 345
BlsI	GCNGC	2 cut(s)	343, 346
Bme1390I	CCNGG	3 cut(s)	77, 155, 668
Bme18I	GGWCC	1 cut(s)	72
BmeT110I	CYCGRG	1 cut(s)	881
BmgT120I	GGNCC	2 cut(s)	72, 326
BmiI	GGNNCC	3 cut(s)	74, 312, 525
BmrFI	CCNGG	3 cut(s)	77, 155, 668
BmsI	GCATC	2 cut(s)	710, 859
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	77
BsaBI	GATNNNNATC	1 cut(s)	228
BsaJI	CCNNGG	4 cut(s)	75, 342, 357, 882
BsaWI	WCCGGW	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 887
Bse118I	RCCGGY	1 cut(s)	760
Bse1I	ACTGG	1 cut(s)	31
Bse3DI	GCAATG	2 cut(s)	59, 399
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	2 cut(s)	155, 668
BseDI	CCNNGG	4 cut(s)	75, 342, 357, 882
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	2 cut(s)	76, 887
BseMI	GCAATG	2 cut(s)	59, 399
BseNI	ACTGG	1 cut(s)	31
BseSI	GKGCMC	1 cut(s)	697
BsgI	GTGCAG	1 cut(s)	915
Bsh1236I	CGCG	1 cut(s)	344
BshFI	GGCC	5 cut(s)	153, 158, 328, 341, 347
BsiHKAI	GWGCWC	1 cut(s)	677
BsiHKCI	CYCGRG	1 cut(s)	881
BsiSI	CCGG	3 cut(s)	70, 77, 761
BslFI	GGGAC	3 cut(s)	58, 382, 518
BslI	CCNNNNNNNGG	2 cut(s)	76, 887
BsmAI	GTCTC	1 cut(s)	539
BsmBI	CGTCTC	1 cut(s)	539
BsmFI	GGGAC	3 cut(s)	58, 382, 518
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	5 cut(s)	153, 158, 328, 341, 347
BsoBI	CYCGRG	1 cut(s)	881
Bsp1286I	GDGCHC	2 cut(s)	677, 697
Bsp1407I	TGTACA	1 cut(s)	508
Bsp143I	GATC	5 cut(s)	223, 229, 275, 310, 858
BspACI	CCGC	4 cut(s)	135, 342, 344, 812
BspANI	GGCC	5 cut(s)	153, 158, 328, 341, 347
BspFNI	CGCG	1 cut(s)	344
BspLI	GGNNCC	3 cut(s)	74, 312, 525
BspMAI	CTGCAG	1 cut(s)	247
BspPI	GGATC	4 cut(s)	218, 283, 305, 318
BsrDI	GCAATG	2 cut(s)	59, 399
BsrFI	RCCGGY	1 cut(s)	760
BsrGI	TGTACA	1 cut(s)	508
BsrI	ACTGG	1 cut(s)	31
BssAI	RCCGGY	1 cut(s)	760
BssECI	CCNNGG	4 cut(s)	75, 342, 357, 882
BssMI	GATC	5 cut(s)	223, 229, 275, 310, 858
BssSI	CACGAG	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	357
Bst2BI	CACGAG	1 cut(s)	351
Bst2UI	CCWGG	2 cut(s)	155, 668
Bst4CI	ACNGT	3 cut(s)	148, 420, 550
Bst6I	CTCTTC	1 cut(s)	537
BstAUI	TGTACA	1 cut(s)	508
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	786
BstDSI	CCRYGG	1 cut(s)	342
BstFNI	CGCG	1 cut(s)	344
BstKTI	GATC	5 cut(s)	226, 232, 278, 313, 861
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	5 cut(s)	223, 229, 275, 310, 858
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 389
BstNI	CCWGG	2 cut(s)	155, 668
BstSCI	CCNGG	3 cut(s)	75, 153, 666
BstSFI	CTRYAG	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	697
BstUI	CGCG	1 cut(s)	344
BstX2I	RGATCY	2 cut(s)	310, 858
BstXI	CCANNNNNNTGG	1 cut(s)	619
BstYI	RGATCY	2 cut(s)	310, 858
BsuRI	GGCC	5 cut(s)	153, 158, 328, 341, 347
BtgI	CCRYGG	1 cut(s)	342
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	299
CaiI	CAGNNNCTG	1 cut(s)	242
Cfr10I	RCCGGY	1 cut(s)	760
Cfr13I	GGNCC	2 cut(s)	72, 326
Cfr42I	CCGCGG	1 cut(s)	345
CsiI	ACCWGGT	1 cut(s)	666
Csp6I	GTAC	3 cut(s)	304, 509, 664
CviAII	CATG	2 cut(s)	270, 512
CviQI	GTAC	3 cut(s)	304, 509, 664
DdeI	CTNAG	1 cut(s)	786
DpnI	GATC	5 cut(s)	225, 231, 277, 312, 860
DpnII	GATC	5 cut(s)	223, 229, 275, 310, 858
EaeI	YGGCCR	2 cut(s)	156, 345
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
Ecl136II	GAGCTC	1 cut(s)	675
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	677
Eco47I	GGWCC	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	675
Eco57I	CTGAAG	2 cut(s)	62, 914
Eco88I	CYCGRG	1 cut(s)	881
EcoICRI	GAGCTC	1 cut(s)	675
EcoRII	CCWGG	2 cut(s)	153, 666
EcoT14I	CCWWGG	1 cut(s)	357
EcoT38I	GRGCYC	1 cut(s)	677
ErhI	CCWWGG	1 cut(s)	357
Esp3I	CGTCTC	1 cut(s)	539
FaeI	CATG	2 cut(s)	273, 515
FaiI	YATR	6 cut(s)	271, 284, 445, 461, 485, 513
FalI	AAGNNNNNCTT	2 cut(s)	554, 586
FaqI	GGGAC	3 cut(s)	58, 382, 518
FatI	CATG	2 cut(s)	269, 511
FauI	CCCGC	1 cut(s)	805
Fnu4HI	GCNGC	2 cut(s)	342, 345
FriOI	GRGCYC	1 cut(s)	677
Fsp4HI	GCNGC	2 cut(s)	342, 345
FspBI	CTAG	2 cut(s)	293, 902
GluI	GCNGC	2 cut(s)	342, 345
HaeIII	GGCC	5 cut(s)	153, 158, 328, 341, 347
HapII	CCGG	3 cut(s)	70, 77, 761
Hin1II	CATG	2 cut(s)	273, 515
HinfI	GANTC	3 cut(s)	112, 266, 409
HpaII	CCGG	3 cut(s)	70, 77, 761
HphI	GGTGA	6 cut(s)	29, 233, 418, 682, 878, 904
Hpy166II	GTNNAC	2 cut(s)	489, 509
Hpy188I	TCNGA	4 cut(s)	129, 280, 310, 652
Hpy188III	TCNNGA	5 cut(s)	103, 227, 497, 527, 881
Hpy8I	GTNNAC	2 cut(s)	489, 509
HpyAV	CCTTC	6 cut(s)	250, 394, 625, 647, 881, 889
HpyCH4III	ACNGT	3 cut(s)	148, 420, 550
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	6 cut(s)	197, 245, 383, 641, 848, 932
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 389
HpyF3I	CTNAG	1 cut(s)	786
HpySE526I	ACGT	1 cut(s)	501
Hsp92II	CATG	2 cut(s)	273, 515
KspI	CCGCGG	1 cut(s)	345
Kzo9I	GATC	5 cut(s)	223, 229, 275, 310, 858
LmnI	GCTCC	3 cut(s)	181, 622, 821
LweI	GCATC	2 cut(s)	710, 859
MabI	ACCWGGT	1 cut(s)	666
MaeI	CTAG	2 cut(s)	293, 902
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	2 cut(s)	238, 685
MalI	GATC	5 cut(s)	225, 231, 277, 312, 860
MboI	GATC	5 cut(s)	223, 229, 275, 310, 858
MboII	GAAGA	4 cut(s)	26, 55, 554, 901
MfeI	CAATTG	1 cut(s)	678
MflI	RGATCY	2 cut(s)	310, 858
MhlI	GDGCHC	2 cut(s)	677, 697
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	7 cut(s)	107, 285, 373, 587, 678, 738, 834
MluNI	TGGCCA	1 cut(s)	158
MlyI	GAGTC	1 cut(s)	106
MmeI	TCCRAC	2 cut(s)	454, 519
MnlI	CCTC	8 cut(s)	60, 100, 241, 359, 397, 658, 739, 877
Mox20I	TGGCCA	1 cut(s)	158
MroXI	GAANNNNTTC	1 cut(s)	717
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	5 cut(s)	15, 200, 731, 741, 940
MslI	CAYNNNNRTG	1 cut(s)	617
Msp20I	TGGCCA	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	3 cut(s)	70, 77, 761
MspR9I	CCNGG	3 cut(s)	77, 155, 668
MunI	CAATTG	1 cut(s)	678
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	2 cut(s)	155, 668
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	2 cut(s)	353, 389
NciI	CCSGG	1 cut(s)	77
NdeII	GATC	5 cut(s)	223, 229, 275, 310, 858
NlaIII	CATG	2 cut(s)	273, 515
NlaIV	GGNNCC	3 cut(s)	74, 312, 525
NmuCI	GTSAC	1 cut(s)	238
PctI	GAATGC	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	717
PfeI	GAWTC	2 cut(s)	266, 409
PkrI	GCNGC	2 cut(s)	343, 346
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PshBI	ATTAAT	1 cut(s)	200
Psp124BI	GAGCTC	1 cut(s)	677
Psp6I	CCWGG	2 cut(s)	153, 666
PspGI	CCWGG	2 cut(s)	153, 666
PspN4I	GGNNCC	3 cut(s)	74, 312, 525
PspPI	GGNCC	2 cut(s)	72, 326
PstI	CTGCAG	1 cut(s)	247
PstNI	CAGNNNCTG	1 cut(s)	242
PsuI	RGATCY	2 cut(s)	310, 858
RsaI	GTAC	3 cut(s)	305, 510, 665
RsaNI	GTAC	3 cut(s)	304, 509, 664
RseI	CAYNNNNRTG	1 cut(s)	617
SacI	GAGCTC	1 cut(s)	677
SacII	CCGCGG	1 cut(s)	345
SaqAI	TTAA	5 cut(s)	15, 200, 731, 741, 940
SatI	GCNGC	2 cut(s)	342, 345
Sau3AI	GATC	5 cut(s)	223, 229, 275, 310, 858
Sau96I	GGNCC	2 cut(s)	72, 326
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	3 cut(s)	77, 155, 668
SduI	GDGCHC	2 cut(s)	677, 697
SexAI	ACCWGGT	1 cut(s)	666
SfaNI	GCATC	2 cut(s)	710, 859
SfcI	CTRYAG	1 cut(s)	243
Sfr303I	CCGCGG	1 cut(s)	345
SgrBI	CCGCGG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	617
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	7 cut(s)	107, 285, 373, 587, 678, 738, 834
SsiI	CCGC	4 cut(s)	135, 342, 344, 812
SspI	AATATT	1 cut(s)	583
SspMI	CTAG	2 cut(s)	293, 902
SstI	GAGCTC	1 cut(s)	677
StyD4I	CCNGG	3 cut(s)	75, 153, 666
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	3 cut(s)	148, 420, 550
TaiI	ACGT	1 cut(s)	504
TasI	AATT	7 cut(s)	107, 285, 373, 587, 678, 738, 834
TatI	WGTACW	1 cut(s)	508
TauI	GCSGC	2 cut(s)	344, 347
TfiI	GAWTC	2 cut(s)	266, 409
Tru1I	TTAA	5 cut(s)	15, 200, 731, 741, 940
Tru9I	TTAA	5 cut(s)	15, 200, 731, 741, 940
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	5 cut(s)	157, 258, 476, 644, 726
TspGWI	ACGGA	1 cut(s)	303
TspRI	CASTG	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	72
VspI	ATTAAT	1 cut(s)	200
XcmI	CCANNNNNNNNNTGG	3 cut(s)	151, 355, 616
XmnI	GAANNNNTTC	1 cut(s)	717
XspI	CTAG	2 cut(s)	293, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.