Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0006471

Physical Location & Seq

Genomic Coordinates Forward (+)

20663277 .. 20667004

Gene Structure 3728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G232700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCTGCTTCTTCTCTTAAATCTGCAGCTGGTTTTCTGCAACTGAAGAAGCCTCAAAATCCATTGCTTCTGCGCTCTCCATCTCAAGCATCCACACTCTCACTCAAGAAATTTACTCCAATGGCTGCTCTCACCACCACCCCAGCCGTCGGTCTCTCCCAAACCTTCACAAAGTTGAAGGAGCAAGGCAAGGTTGCATTGATCCCTTACATCACTGCTGGTGATCCCGATCTTTCAATCACGGCAGAAGCATTGAAGGTACTTGATTCTTGTGGTTCGGACATAATCGAATTAGGTGTGCCATATTCTGATCCATTAGCAGATGGTCCAGTTATACAGGCTGCAACCACCCGTTCCTTGTCAAAGGGGACCAATCTGAATTCAATTGTTTCAATGTTGAAGGAGGTGATTCCACAACTGTCTTGCCCAATTGCTCTCTTTACATACTATAACCCAATATTGAAGCGTGGAATTGGAGAATTCATGTCCACCATTAGAGACGTTGGTGTACATGGGCTTGTGGTTCCAGATGTTCCATTGGAAGAGACGGAAATTTTGAGAAAGGAAGCTGTGAAACATAATATTGAATTGGTATTACTAACTACGCCCACTACACCAATTGATCGGATGAGGGCCATTGCTGAAGCTTCAGAAGGATTTTTGTACCTGGTGAGCTCGATCGGAGTTACCGGTGCCCGTGCATCTGTGAATGAACGAGTTCCTGCTCTTTTGAAGGAAATTAAAGAGGCAACGTCAAAGCCTGTAGCAGTTGGTTTTGGCATCTCAAAGCCCGAACAGGCGAAACAGGTAGCAGGATGGGGAGCTGATGGTGTCATTGTTGGCAGTGCAATCGTGAGGCTGTTGGGTGAAGCCAAAACTCCTGAGGAAGGGTTGAAGGAACTAGCAATTTTCACCAAGTCTCTAAAATCTGCACTCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

314

Amino Acids

33.11

Weight (kDa)

8.7

Isoelectric Point (pI)

34.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54640
fragaria_vesca	FvH4_2g22570
malus_domestica	MD05G1206300.v1.1 MD10G1193300.v1.1
prunus_persica	Prupe.8G232700_v2.0.a1
pyrus_communis	pycom05g19230 pycom10g16710
rosa_chinensis	RchiOBHm_Chr3g0488871 RchiOBHm_Chr6g0284041 RchiOBHm_Chr6g0289611
rosa_laevigata	RLG00000012288 RLG00000026432
rosa_multiflora	Rmu_co8332575.1_g000001 Rmu_sc0000607.1_g000042 Rmu_sc0001527.1_g000067 Rmu_sc0001850.1_g000026 Rmu_sc0005376.1_g000002
rosa_roxburghii	Rroxscaffold_1G00026080 Rroxscaffold_7G00177810
rosa_rugosa	Rorug06G0205100
rosa_samantha	Rh5AG506400 Rh6BG323300 Rh6CG329700 Rh6DG267800 Rh6DG315100
rosa_wichuraiana	Rw6G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	692
AclWI	GGATC	3 cut(s)	196, 218, 305
AcsI	RAATTY	4 cut(s)	110, 379, 479, 552
AcuI	CTGAAG	3 cut(s)	65, 633, 663
AfaI	GTAC	3 cut(s)	261, 510, 665
AfiI	CCNNNNNNNGG	2 cut(s)	149, 887
AgeI	ACCGGT	1 cut(s)	689
AjnI	CCWGG	1 cut(s)	666
AleI	CACNNNNGTG	1 cut(s)	937
AluBI	AGCT	5 cut(s)	29, 569, 647, 675, 824
AluI	AGCT	5 cut(s)	29, 569, 647, 675, 824
Alw21I	GWGCWC	1 cut(s)	677
Alw26I	GTCTC	4 cut(s)	158, 492, 539, 924
AlwI	GGATC	3 cut(s)	196, 218, 305
AoxI	GGCC	1 cut(s)	633
ApeKI	GCWGC	4 cut(s)	5, 26, 125, 341
ApoI	RAATTY	4 cut(s)	110, 379, 479, 552
ArsI	GACNNNNNNTTYG	2 cut(s)	538, 570
AsiGI	ACCGGT	1 cut(s)	689
Asp700I	GAANNNNTTC	1 cut(s)	717
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	3 cut(s)	326, 369, 633
AsuHPI	GGTGA	6 cut(s)	124, 233, 418, 682, 878, 904
AvaII	GGWCC	2 cut(s)	326, 369
AxyI	CCTNAGG	1 cut(s)	882
BaeGI	GKGCMC	1 cut(s)	697
BanI	GGYRCC	1 cut(s)	692
BanII	GRGCYC	1 cut(s)	677
Bbv12I	GWGCWC	1 cut(s)	677
BbvI	GCAGC	3 cut(s)	38, 112, 328
BccI	CCATC	4 cut(s)	88, 317, 810, 821
BceAI	ACGGC	2 cut(s)	131, 258
BcgI	CGANNNNNNTGC	2 cut(s)	832, 866
BciT130I	CCWGG	1 cut(s)	668
BcoDI	GTCTC	4 cut(s)	158, 492, 539, 924
BfaI	CTAG	1 cut(s)	902
BfmI	CTRYAG	2 cut(s)	24, 762
BisI	GCNGC	4 cut(s)	6, 27, 126, 342
BlsI	GCNGC	4 cut(s)	7, 28, 127, 343
Bme1390I	CCNGG	1 cut(s)	668
Bme18I	GGWCC	2 cut(s)	326, 369
BmgT120I	GGNCC	3 cut(s)	326, 369, 633
BmiI	GGNNCC	3 cut(s)	370, 525, 694
BmrFI	CCNGG	1 cut(s)	668
BmsI	GCATC	3 cut(s)	98, 710, 789
BpuEI	CTTGAG	2 cut(s)	69, 89
BsaBI	GATNNNNATC	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	158
BsaWI	WCCGGW	1 cut(s)	689
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 887
Bse118I	RCCGGY	1 cut(s)	689
Bse1I	ACTGG	1 cut(s)	329
Bse21I	CCTNAGG	1 cut(s)	882
Bse3DI	GCAATG	2 cut(s)	62, 636
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	668
BseGI	GGATG	3 cut(s)	89, 633, 821
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	2 cut(s)	149, 887
BseMI	GCAATG	2 cut(s)	62, 636
BseMII	CTCAG	1 cut(s)	873
BseNI	ACTGG	1 cut(s)	329
BseSI	GKGCMC	1 cut(s)	697
BseXI	GCAGC	3 cut(s)	38, 112, 328
BseYI	CCCAGC	1 cut(s)	142
BsgI	GTGCAG	1 cut(s)	915
Bsh1285I	CGRYCG	1 cut(s)	681
BshFI	GGCC	1 cut(s)	635
BshNI	GGYRCC	1 cut(s)	692
BshTI	ACCGGT	1 cut(s)	689
BsiEI	CGRYCG	1 cut(s)	681
BsiHKAI	GWGCWC	1 cut(s)	677
BsiSI	CCGG	1 cut(s)	690
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	2 cut(s)	149, 887
BsmAI	GTCTC	4 cut(s)	158, 492, 539, 924
BsmBI	CGTCTC	2 cut(s)	492, 539
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	635
Bso31I	GGTCTC	1 cut(s)	158
Bsp1286I	GDGCHC	2 cut(s)	677, 697
Bsp1407I	TGTACA	1 cut(s)	508
Bsp143I	GATC	6 cut(s)	201, 223, 229, 310, 622, 678
BspANI	GGCC	1 cut(s)	635
BspCNI	CTCAG	1 cut(s)	874
BspLI	GGNNCC	3 cut(s)	370, 525, 694
BspMAI	CTGCAG	1 cut(s)	28
BspPI	GGATC	3 cut(s)	196, 218, 305
BspT107I	GGYRCC	1 cut(s)	692
BspTNI	GGTCTC	1 cut(s)	158
BsrDI	GCAATG	2 cut(s)	62, 636
BsrFI	RCCGGY	1 cut(s)	689
BsrGI	TGTACA	1 cut(s)	508
BsrI	ACTGG	1 cut(s)	329
BssAI	RCCGGY	1 cut(s)	689
BssMI	GATC	6 cut(s)	201, 223, 229, 310, 622, 678
Bst2UI	CCWGG	1 cut(s)	668
Bst4CI	ACNGT	1 cut(s)	420
Bst6I	CTCTTC	1 cut(s)	537
BstAUI	TGTACA	1 cut(s)	508
BstDEI	CTNAG	1 cut(s)	882
BstENI	CCTNNNNNAGG	1 cut(s)	885
BstF5I	GGATG	3 cut(s)	89, 633, 821
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	6 cut(s)	204, 226, 232, 313, 625, 681
BstMAI	GTCTC	4 cut(s)	158, 492, 539, 924
BstMBI	GATC	6 cut(s)	201, 223, 229, 310, 622, 678
BstMCI	CGRYCG	1 cut(s)	681
BstNI	CCWGG	1 cut(s)	668
BstSCI	CCNGG	1 cut(s)	666
BstSFI	CTRYAG	2 cut(s)	24, 762
BstSLI	GKGCMC	1 cut(s)	697
BstV1I	GCAGC	3 cut(s)	38, 112, 328
Bsu36I	CCTNAGG	1 cut(s)	882
BsuRI	GGCC	1 cut(s)	635
BtsCI	GGATG	3 cut(s)	89, 633, 821
BtsI	GCAGTG	2 cut(s)	213, 850
BtsIMutI	CAGTG	2 cut(s)	213, 850
CfoI	GCGC	1 cut(s)	75
Cfr10I	RCCGGY	1 cut(s)	689
Cfr13I	GGNCC	3 cut(s)	326, 369, 633
CsiI	ACCWGGT	1 cut(s)	666
Csp6I	GTAC	3 cut(s)	260, 509, 664
CspAI	ACCGGT	1 cut(s)	689
CviAII	CATG	2 cut(s)	484, 512
CviQI	GTAC	3 cut(s)	260, 509, 664
DdeI	CTNAG	1 cut(s)	882
DpnI	GATC	6 cut(s)	203, 225, 231, 312, 624, 680
DpnII	GATC	6 cut(s)	201, 223, 229, 310, 622, 678
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
Ecl136II	GAGCTC	1 cut(s)	675
Eco24I	GRGCYC	1 cut(s)	677
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	2 cut(s)	326, 369
Eco53kI	GAGCTC	1 cut(s)	675
Eco57I	CTGAAG	3 cut(s)	65, 633, 663
Eco81I	CCTNAGG	1 cut(s)	882
EcoICRI	GAGCTC	1 cut(s)	675
EcoNI	CCTNNNNNAGG	1 cut(s)	885
EcoRI	GAATTC	2 cut(s)	379, 479
EcoRII	CCWGG	1 cut(s)	666
EcoT38I	GRGCYC	1 cut(s)	677
Esp3I	CGTCTC	2 cut(s)	492, 539
FaeI	CATG	2 cut(s)	487, 515
FaiI	YATR	8 cut(s)	284, 304, 335, 445, 450, 485, 513, 579
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	2 cut(s)	483, 511
Fnu4HI	GCNGC	4 cut(s)	6, 27, 126, 342
FokI	GGATG	3 cut(s)	76, 640, 828
FriOI	GRGCYC	1 cut(s)	677
Fsp4HI	GCNGC	4 cut(s)	6, 27, 126, 342
FspBI	CTAG	1 cut(s)	902
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	4 cut(s)	6, 27, 126, 342
GsaI	CCCAGC	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	635
HapII	CCGG	1 cut(s)	690
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	487, 515
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	645
HinfI	GANTC	2 cut(s)	266, 409
HpaII	CCGG	1 cut(s)	690
HphI	GGTGA	6 cut(s)	124, 233, 418, 682, 878, 904
Hpy166II	GTNNAC	2 cut(s)	489, 509
Hpy188I	TCNGA	6 cut(s)	280, 310, 378, 627, 652, 683
Hpy188III	TCNNGA	5 cut(s)	106, 227, 527, 853, 881
Hpy8I	GTNNAC	2 cut(s)	489, 509
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	8 cut(s)	172, 175, 250, 394, 647, 727, 881, 889
HpyCH4III	ACNGT	1 cut(s)	420
HpyCH4IV	ACGT	2 cut(s)	501, 752
HpyCH4V	TGCA	7 cut(s)	26, 40, 197, 344, 701, 848, 932
HpyF3I	CTNAG	1 cut(s)	882
HpySE526I	ACGT	2 cut(s)	501, 752
Hsp92II	CATG	2 cut(s)	487, 515
HspAI	GCGC	1 cut(s)	73
Kzo9I	GATC	6 cut(s)	201, 223, 229, 310, 622, 678
LmnI	GCTCC	2 cut(s)	181, 821
Lsp1109I	GCAGC	3 cut(s)	38, 112, 328
LweI	GCATC	3 cut(s)	98, 710, 789
MabI	ACCWGGT	1 cut(s)	666
MaeI	CTAG	1 cut(s)	902
MaeII	ACGT	2 cut(s)	501, 752
MaeIII	GTNAC	1 cut(s)	685
MalI	GATC	6 cut(s)	203, 225, 231, 312, 624, 680
MboI	GATC	6 cut(s)	201, 223, 229, 310, 622, 678
MboII	GAAGA	3 cut(s)	3, 58, 554
MfeI	CAATTG	3 cut(s)	384, 429, 618
MhlI	GDGCHC	2 cut(s)	677, 697
MnlI	CCTC	6 cut(s)	63, 397, 624, 739, 849, 877
MroXI	GAANNNNTTC	1 cut(s)	717
MseI	TTAA	2 cut(s)	18, 741
MslI	CAYNNNNRTG	1 cut(s)	937
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	1 cut(s)	690
MspR9I	CCNGG	1 cut(s)	668
MunI	CAATTG	3 cut(s)	384, 429, 618
MvaI	CCWGG	1 cut(s)	668
NdeII	GATC	6 cut(s)	201, 223, 229, 310, 622, 678
NlaIII	CATG	2 cut(s)	487, 515
NlaIV	GGNNCC	3 cut(s)	370, 525, 694
OliI	CACNNNNGTG	1 cut(s)	937
PdmI	GAANNNNTTC	1 cut(s)	717
PfeI	GAWTC	2 cut(s)	266, 409
PinAI	ACCGGT	1 cut(s)	689
PkrI	GCNGC	4 cut(s)	7, 28, 127, 343
Ple19I	CGATCG	1 cut(s)	681
Psp124BI	GAGCTC	1 cut(s)	677
Psp6I	CCWGG	1 cut(s)	666
PspFI	CCCAGC	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	666
PspN4I	GGNNCC	3 cut(s)	370, 525, 694
PspPI	GGNCC	3 cut(s)	326, 369, 633
PstI	CTGCAG	1 cut(s)	28
PvuI	CGATCG	1 cut(s)	681
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	3 cut(s)	261, 510, 665
RsaNI	GTAC	3 cut(s)	260, 509, 664
RseI	CAYNNNNRTG	1 cut(s)	937
SacI	GAGCTC	1 cut(s)	677
SaqAI	TTAA	2 cut(s)	18, 741
SatI	GCNGC	4 cut(s)	6, 27, 126, 342
Sau3AI	GATC	6 cut(s)	201, 223, 229, 310, 622, 678
Sau96I	GGNCC	3 cut(s)	326, 369, 633
ScrFI	CCNGG	1 cut(s)	668
SduI	GDGCHC	2 cut(s)	677, 697
SexAI	ACCWGGT	1 cut(s)	666
SfaNI	GCATC	3 cut(s)	98, 710, 789
SfcI	CTRYAG	2 cut(s)	24, 762
SinI	GGWCC	2 cut(s)	326, 369
SmiMI	CAYNNNNRTG	1 cut(s)	937
SmlI	CTYRAG	2 cut(s)	84, 104
SmoI	CTYRAG	2 cut(s)	84, 104
SspI	AATATT	2 cut(s)	459, 583
SspMI	CTAG	1 cut(s)	902
SstI	GAGCTC	1 cut(s)	677
StyD4I	CCNGG	1 cut(s)	666
TaaI	ACNGT	1 cut(s)	420
TaiI	ACGT	2 cut(s)	504, 755
TaqI	TCGA	2 cut(s)	288, 677
TaqII	GACCGA	1 cut(s)	140
TatI	WGTACW	1 cut(s)	508
TfiI	GAWTC	2 cut(s)	266, 409
Tru1I	TTAA	2 cut(s)	18, 741
Tru9I	TTAA	2 cut(s)	18, 741
TscAI	CASTG	2 cut(s)	220, 850
TseI	GCWGC	4 cut(s)	5, 26, 125, 341
TspDTI	ATGAA	2 cut(s)	472, 726
TspGWI	ACGGA	1 cut(s)	563
TspRI	CASTG	2 cut(s)	220, 850
VpaK11BI	GGWCC	2 cut(s)	326, 369
XagI	CCTNNNNNAGG	1 cut(s)	885
XapI	RAATTY	4 cut(s)	110, 379, 479, 552
XmnI	GAANNNNTTC	1 cut(s)	717
XspI	CTAG	1 cut(s)	902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.