Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006471

Physical Location & Seq

Genomic Coordinates Forward (+)

36605975 .. 36607887

Gene Structure 1913 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45318

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCTTCTCTGACCACCACCAACACCAGCGTCGGCCTCTCCAAAACTTTCATCAAACTGAAGGAGCAAGGCAAGGTTGCATTAATCCCTTACACTACTGCCGGTGATCCTGATCTATCAGTCACCGCAGAAGCATTGAAGGTCCTAGATTCTTGTGGATCGAACATAATTGAATTAGGCGTGCCATACTCTGATCCATTAGTAGCTGGGCTAGTTATACAGACTGTAGCCACTCGTGCCTTGGCAAGAGGGACCAATTTGAATTCAATCCTGGCAATGTTGAAGGAGGTACCTTTACATGCAATCTTTTATTATCTGATCAATCTCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

110

Amino Acids

11.66

Weight (kDa)

6.54

Isoelectric Point (pI)

21.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trp_syntA	PF00290	17 - 97	3e-25	Tryptophan synthase alpha chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54640
fragaria_vesca	FvH4_2g22570
malus_domestica	MD05G1206300.v1.1 MD10G1193300.v1.1
prunus_persica	Prupe.8G232700_v2.0.a1
pyrus_communis	pycom05g19230 pycom10g16710
rosa_chinensis	RchiOBHm_Chr3g0488871 RchiOBHm_Chr6g0284041 RchiOBHm_Chr6g0289611
rosa_laevigata	RLG00000012288 RLG00000026432
rosa_multiflora	Rmu_co8332575.1_g000001 Rmu_sc0000607.1_g000042 Rmu_sc0001527.1_g000067 Rmu_sc0001850.1_g000026 Rmu_sc0005376.1_g000002
rosa_roxburghii	Rroxscaffold_1G00026080 Rroxscaffold_7G00177810
rosa_rugosa	Rorug06G0205100
rosa_samantha	Rh5AG506400 Rh6BG323300 Rh6CG329700 Rh6DG267800 Rh6DG315100
rosa_wichuraiana	Rw6G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	289
AccB1I	GGYRCC	1 cut(s)	289
AciI	CCGC	1 cut(s)	126
AclWI	GGATC	3 cut(s)	101, 166, 188
AcsI	RAATTY	1 cut(s)	262
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	1 cut(s)	291
AgsI	TTSAA	5 cut(s)	139, 173, 262, 267, 283
AjnI	CCWGG	1 cut(s)	270
AluBI	AGCT	1 cut(s)	206
AluI	AGCT	1 cut(s)	206
AlwI	GGATC	3 cut(s)	101, 166, 188
AoxI	GGCC	1 cut(s)	34
ApoI	RAATTY	1 cut(s)	262
AseI	ATTAAT	1 cut(s)	83
Asp718I	GGTACC	1 cut(s)	289
AspS9I	GGNCC	2 cut(s)	142, 252
AsuHPI	GGTGA	2 cut(s)	115, 116
AvaII	GGWCC	2 cut(s)	142, 252
BanI	GGYRCC	1 cut(s)	289
BauI	CACGAG	1 cut(s)	234
BciT130I	CCWGG	1 cut(s)	272
BclI	TGATCA	1 cut(s)	318
BfaI	CTAG	2 cut(s)	146, 212
BfmI	CTRYAG	1 cut(s)	225
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	2 cut(s)	142, 252
BmgT120I	GGNCC	2 cut(s)	142, 252
BmiI	GGNNCC	2 cut(s)	253, 291
BmrFI	CCNGG	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	240
Bse118I	RCCGGY	1 cut(s)	101
Bse3DI	GCAATG	1 cut(s)	282
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	1 cut(s)	240
BseJI	GATNNNNATC	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	282
BseYI	CCCAGC	1 cut(s)	206
BshFI	GGCC	1 cut(s)	36
BshNI	GGYRCC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	265
BsmFI	GGGAC	1 cut(s)	265
BsnI	GGCC	1 cut(s)	36
Bsp143I	GATC	5 cut(s)	106, 112, 158, 193, 318
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	253, 291
BspPI	GGATC	3 cut(s)	101, 166, 188
BspT107I	GGYRCC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	5 cut(s)	106, 112, 158, 193, 318
BssSI	CACGAG	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	240
Bst2BI	CACGAG	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	182
BstKTI	GATC	5 cut(s)	109, 115, 161, 196, 321
BstMBI	GATC	5 cut(s)	106, 112, 158, 193, 318
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	1 cut(s)	272
BstNSI	RCATGY	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	270
BstSFI	CTRYAG	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	182
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	142, 252
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	1 cut(s)	299
CviJI	RGCY	5 cut(s)	5, 36, 206, 211, 230
CviKI_1	RGCY	5 cut(s)	5, 36, 206, 211, 230
CviQI	GTAC	1 cut(s)	290
DpnI	GATC	5 cut(s)	108, 114, 160, 195, 320
DpnII	GATC	5 cut(s)	106, 112, 158, 193, 318
Eco130I	CCWWGG	1 cut(s)	240
Eco47I	GGWCC	2 cut(s)	142, 252
Eco57I	CTGAAG	1 cut(s)	80
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRI	GAATTC	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	270
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	1 cut(s)	302
FaiI	YATR	4 cut(s)	167, 187, 218, 300
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	1 cut(s)	298
FbaI	TGATCA	1 cut(s)	318
FspBI	CTAG	2 cut(s)	146, 212
GsaI	CCCAGC	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	1 cut(s)	102
HgaI	GACGC	1 cut(s)	19
Hin1II	CATG	1 cut(s)	302
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	2 cut(s)	115, 116
Hpy188I	TCNGA	3 cut(s)	12, 193, 318
Hpy188III	TCNNGA	1 cut(s)	110
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	3 cut(s)	55, 133, 277
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4V	TGCA	2 cut(s)	80, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
Hsp92II	CATG	1 cut(s)	302
KpnI	GGTACC	1 cut(s)	293
Ksp22I	TGATCA	1 cut(s)	318
Kzo9I	GATC	5 cut(s)	106, 112, 158, 193, 318
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	6 cut(s)	40, 115, 123, 192, 257, 284
MaeI	CTAG	2 cut(s)	146, 212
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	5 cut(s)	108, 114, 160, 195, 320
MboI	GATC	5 cut(s)	106, 112, 158, 193, 318
MluCI	AATT	4 cut(s)	168, 173, 256, 262
MnlI	CCTC	3 cut(s)	47, 242, 280
MseI	TTAA	1 cut(s)	83
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	272
MvaI	CCWGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeII	GATC	5 cut(s)	106, 112, 158, 193, 318
NlaIII	CATG	1 cut(s)	302
NlaIV	GGNNCC	2 cut(s)	253, 291
NmuCI	GTSAC	1 cut(s)	121
NspI	RCATGY	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	149
PpuMI	RGGWCCY	1 cut(s)	142
PshBI	ATTAAT	1 cut(s)	83
Psp5II	RGGWCCY	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	270
PspFI	CCCAGC	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	2 cut(s)	253, 291
PspPI	GGNCC	2 cut(s)	142, 252
PspPPI	RGGWCCY	1 cut(s)	142
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	83
Sau3AI	GATC	5 cut(s)	106, 112, 158, 193, 318
Sau96I	GGNCC	2 cut(s)	142, 252
ScrFI	CCNGG	1 cut(s)	272
SetI	ASST	5 cut(s)	78, 144, 208, 291, 295
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	2 cut(s)	142, 252
Sse9I	AATT	4 cut(s)	168, 173, 256, 262
SsiI	CCGC	1 cut(s)	126
SspMI	CTAG	2 cut(s)	146, 212
StyD4I	CCNGG	1 cut(s)	270
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	226
TaqI	TCGA	1 cut(s)	161
TasI	AATT	4 cut(s)	168, 173, 256, 262
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	121
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	40
VpaK11BI	GGWCC	2 cut(s)	142, 252
VspI	ATTAAT	1 cut(s)	83
XapI	RAATTY	1 cut(s)	262
XceI	RCATGY	1 cut(s)	302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XspI	CTAG	2 cut(s)	146, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.