Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006471

Physical Location & Seq

Genomic Coordinates Reverse (-)

3022681 .. 3023588

Gene Structure 908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026432

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCCGCTTATCCTCGGATTCCTCGAACTCCGGGAATCTGAAAACTTTCGGCAGGCTCGACCCACGGCACATCGGATCCAGATCGTCGTCCTCGCATTCCTTGTAGCTCGCTTTCTTCAGCTGAAGAAGCCTCAAAGCCCATTGCTTTCTCGTTCCCCGGCTCAGAAGTCCACCCTTATGTTCAACAAAGTTACTCCAATGACTTCTCTGACCACCAACGTCGGCCTCTCCAGAACTTTCATAAAATTGAAGGAGCAAGGCAAAGTTGCATTAATCCCTTACATTACTGCTGGTGATCCTGATCTATCAGTCACCGCAGAAGCATTGAAGGTACTGGATTCTTGTGGATCAGACATAATTGAATTAGGAGTGCCATACTCCGATCCATTAGCAGATGGGCCAGTTATACAGGCTGCAGCCACTCGTTCTTTGGCAAGAGGGACCAATTTGAATGCAATCTTGGCAATGTTGAAGGAGGTGATTCCCAAATTGTCTTGCCCAATTGCTCTCTTTACATTCTACAATCCTATTTTGAAGCCTGGTGTTGGAGAGTTCATGTGCAGCATTAAAGATGTCGGTGTACATGGACATTCTGCGAAAGGAAGCCATGAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

206

Amino Acids

22.21

Weight (kDa)

9.45

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trp_syntA	PF00290	80 - 196	1.1e-40	Tryptophan synthase alpha chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54640
fragaria_vesca	FvH4_2g22570
malus_domestica	MD05G1206300.v1.1 MD10G1193300.v1.1
prunus_persica	Prupe.8G232700_v2.0.a1
pyrus_communis	pycom05g19230 pycom10g16710
rosa_chinensis	RchiOBHm_Chr3g0488871 RchiOBHm_Chr6g0284041 RchiOBHm_Chr6g0289611
rosa_laevigata	RLG00000012288 RLG00000026432
rosa_multiflora	Rmu_co8332575.1_g000001 Rmu_sc0000607.1_g000042 Rmu_sc0001527.1_g000067 Rmu_sc0001850.1_g000026 Rmu_sc0005376.1_g000002
rosa_roxburghii	Rroxscaffold_1G00026080 Rroxscaffold_7G00177810
rosa_rugosa	Rorug06G0205100
rosa_samantha	Rh5AG506400 Rh6BG323300 Rh6CG329700 Rh6DG267800 Rh6DG315100
rosa_wichuraiana	Rw6G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 315
AclWI	GGATC	5 cut(s)	70, 83, 290, 355, 377
AcuI	CTGAAG	2 cut(s)	101, 143
AfaI	GTAC	2 cut(s)	333, 582
AfiI	CCNNNNNNNGG	1 cut(s)	545
AgsI	TTSAA	7 cut(s)	184, 250, 328, 362, 451, 472, 535
AjnI	CCWGG	1 cut(s)	538
AjuI	GAANNNNNNNTTGG	2 cut(s)	443, 475
AluBI	AGCT	2 cut(s)	107, 121
AluI	AGCT	2 cut(s)	107, 121
AlwI	GGATC	5 cut(s)	70, 83, 290, 355, 377
AoxI	GGCC	2 cut(s)	223, 398
ApeKI	GCWGC	3 cut(s)	413, 416, 561
AseI	ATTAAT	1 cut(s)	272
Asp700I	GAANNNNTTC	1 cut(s)	45
AspS9I	GGNCC	2 cut(s)	398, 441
AsuC2I	CCSGG	2 cut(s)	32, 158
AsuHPI	GGTGA	3 cut(s)	304, 305, 490
AvaII	GGWCC	1 cut(s)	441
BamHI	GGATCC	1 cut(s)	75
BbvI	GCAGC	3 cut(s)	400, 428, 573
BccI	CCATC	1 cut(s)	389
BceAI	ACGGC	1 cut(s)	81
BciT130I	CCWGG	1 cut(s)	540
BcnI	CCSGG	2 cut(s)	32, 158
BfmI	CTRYAG	1 cut(s)	414
BisI	GCNGC	4 cut(s)	5, 414, 417, 562
BlsI	GCNGC	4 cut(s)	6, 415, 418, 563
Bme1390I	CCNGG	3 cut(s)	32, 158, 540
Bme18I	GGWCC	1 cut(s)	441
BmgT120I	GGNCC	2 cut(s)	398, 441
BmiI	GGNNCC	2 cut(s)	77, 442
BmrFI	CCNGG	3 cut(s)	32, 158, 540
BpmI	CTGGAG	1 cut(s)	214
BpuMI	CCSGG	2 cut(s)	32, 158
BsaBI	GATNNNNATC	2 cut(s)	80, 300
BsaJI	CCNNGG	3 cut(s)	13, 63, 156
Bsc4I	CCNNNNNNNGG	1 cut(s)	545
Bse1I	ACTGG	2 cut(s)	339, 401
Bse3DI	GCAATG	2 cut(s)	140, 471
Bse8I	GATNNNNATC	2 cut(s)	80, 300
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	3 cut(s)	13, 63, 156
BseJI	GATNNNNATC	2 cut(s)	80, 300
BseLI	CCNNNNNNNGG	1 cut(s)	545
BseMI	GCAATG	2 cut(s)	140, 471
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	2 cut(s)	339, 401
BseXI	GCAGC	3 cut(s)	400, 428, 573
BsgI	GTGCAG	1 cut(s)	580
BshFI	GGCC	2 cut(s)	225, 400
BsiSI	CCGG	2 cut(s)	31, 158
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	1 cut(s)	545
BsmFI	GGGAC	1 cut(s)	454
BsmI	GAATGC	2 cut(s)	95, 457
BsnI	GGCC	2 cut(s)	225, 400
Bsp1407I	TGTACA	1 cut(s)	580
Bsp143I	GATC	6 cut(s)	75, 81, 295, 301, 347, 382
BspACI	CCGC	2 cut(s)	5, 315
BspANI	GGCC	2 cut(s)	225, 400
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	77, 442
BspMAI	CTGCAG	1 cut(s)	418
BspPI	GGATC	5 cut(s)	70, 83, 290, 355, 377
BsrDI	GCAATG	2 cut(s)	140, 471
BsrGI	TGTACA	1 cut(s)	580
BsrI	ACTGG	2 cut(s)	339, 401
BssECI	CCNNGG	3 cut(s)	13, 63, 156
BssMI	GATC	6 cut(s)	75, 81, 295, 301, 347, 382
Bst2UI	CCWGG	1 cut(s)	540
BstAUI	TGTACA	1 cut(s)	580
BstC8I	GCNNGC	2 cut(s)	54, 109
BstDEI	CTNAG	1 cut(s)	162
BstDSI	CCRYGG	1 cut(s)	63
BstKTI	GATC	6 cut(s)	78, 84, 298, 304, 350, 385
BstMBI	GATC	6 cut(s)	75, 81, 295, 301, 347, 382
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 461
BstNI	CCWGG	1 cut(s)	540
BstSCI	CCNGG	3 cut(s)	30, 156, 538
BstSFI	CTRYAG	1 cut(s)	414
BstV1I	GCAGC	3 cut(s)	400, 428, 573
BstX2I	RGATCY	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	75
BsuRI	GGCC	2 cut(s)	225, 400
BtgI	CCRYGG	1 cut(s)	63
Cac8I	GCNNGC	2 cut(s)	54, 109
Cfr13I	GGNCC	2 cut(s)	398, 441
Csp6I	GTAC	2 cut(s)	332, 581
CviAII	CATG	3 cut(s)	556, 584, 608
CviQI	GTAC	2 cut(s)	332, 581
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	6 cut(s)	77, 83, 297, 303, 349, 384
DpnII	GATC	6 cut(s)	75, 81, 295, 301, 347, 382
Eco47I	GGWCC	1 cut(s)	441
Eco57I	CTGAAG	2 cut(s)	101, 143
EcoRII	CCWGG	1 cut(s)	538
FaeI	CATG	3 cut(s)	559, 587, 611
FaiI	YATR	8 cut(s)	179, 242, 356, 376, 407, 557, 585, 609
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	3 cut(s)	555, 583, 607
Fnu4HI	GCNGC	4 cut(s)	5, 414, 417, 562
Fsp4HI	GCNGC	4 cut(s)	5, 414, 417, 562
GluI	GCNGC	4 cut(s)	5, 414, 417, 562
GsuI	CTGGAG	1 cut(s)	214
HaeIII	GGCC	2 cut(s)	225, 400
HapII	CCGG	2 cut(s)	31, 158
Hin1II	CATG	3 cut(s)	559, 587, 611
HinfI	GANTC	4 cut(s)	18, 35, 338, 481
HpaII	CCGG	2 cut(s)	31, 158
HphI	GGTGA	3 cut(s)	304, 305, 490
Hpy166II	GTNNAC	2 cut(s)	171, 581
Hpy188I	TCNGA	7 cut(s)	17, 40, 75, 165, 210, 352, 382
Hpy188III	TCNNGA	3 cut(s)	79, 231, 299
Hpy8I	GTNNAC	2 cut(s)	171, 581
Hpy99I	CGWCG	2 cut(s)	89, 224
HpyAV	CCTTC	3 cut(s)	244, 322, 466
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	4 cut(s)	269, 416, 455, 561
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 461
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	3 cut(s)	559, 587, 611
Kzo9I	GATC	6 cut(s)	75, 81, 295, 301, 347, 382
LmnI	GCTCC	1 cut(s)	253
Lsp1109I	GCAGC	3 cut(s)	400, 428, 573
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	2 cut(s)	190, 310
MalI	GATC	6 cut(s)	77, 83, 297, 303, 349, 384
MboI	GATC	6 cut(s)	75, 81, 295, 301, 347, 382
MboII	GAAGA	2 cut(s)	107, 136
MfeI	CAATTG	1 cut(s)	501
MflI	RGATCY	1 cut(s)	75
MluCI	AATT	6 cut(s)	245, 357, 362, 445, 488, 501
MmeI	TCCRAC	1 cut(s)	526
MnlI	CCTC	7 cut(s)	23, 32, 101, 141, 236, 431, 469
MroXI	GAANNNNTTC	1 cut(s)	45
MseI	TTAA	2 cut(s)	272, 567
MslI	CAYNNNNRTG	1 cut(s)	176
MspA1I	CMGCKG	1 cut(s)	121
MspI	CCGG	2 cut(s)	31, 158
MspR9I	CCNGG	3 cut(s)	32, 158, 540
MunI	CAATTG	1 cut(s)	501
Mva1269I	GAATGC	2 cut(s)	95, 457
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	2 cut(s)	127, 461
NciI	CCSGG	2 cut(s)	32, 158
NdeII	GATC	6 cut(s)	75, 81, 295, 301, 347, 382
NlaIII	CATG	3 cut(s)	559, 587, 611
NlaIV	GGNNCC	2 cut(s)	77, 442
NmuCI	GTSAC	1 cut(s)	310
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 55
PctI	GAATGC	2 cut(s)	95, 457
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	4 cut(s)	18, 35, 338, 481
PfoI	TCCNGGA	1 cut(s)	30
PkrI	GCNGC	4 cut(s)	6, 415, 418, 563
PshBI	ATTAAT	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	2 cut(s)	77, 442
PspPI	GGNCC	2 cut(s)	398, 441
PstI	CTGCAG	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	75
PvuII	CAGCTG	1 cut(s)	121
RsaI	GTAC	2 cut(s)	333, 582
RsaNI	GTAC	2 cut(s)	332, 581
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	272, 567
SatI	GCNGC	4 cut(s)	5, 414, 417, 562
Sau3AI	GATC	6 cut(s)	75, 81, 295, 301, 347, 382
Sau96I	GGNCC	2 cut(s)	398, 441
ScrFI	CCNGG	3 cut(s)	32, 158, 540
SetI	ASST	5 cut(s)	109, 123, 222, 333, 480
SfcI	CTRYAG	1 cut(s)	414
SinI	GGWCC	1 cut(s)	441
SmiMI	CAYNNNNRTG	1 cut(s)	176
Sse9I	AATT	6 cut(s)	245, 357, 362, 445, 488, 501
SsiI	CCGC	2 cut(s)	5, 315
StyD4I	CCNGG	3 cut(s)	30, 156, 538
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	2 cut(s)	24, 58
TasI	AATT	6 cut(s)	245, 357, 362, 445, 488, 501
TatI	WGTACW	1 cut(s)	580
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	4 cut(s)	18, 35, 338, 481
Tru1I	TTAA	2 cut(s)	272, 567
Tru9I	TTAA	2 cut(s)	272, 567
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	3 cut(s)	413, 416, 561
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	2 cut(s)	229, 544
VpaK11BI	GGWCC	1 cut(s)	441
VspI	ATTAAT	1 cut(s)	272
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.