AT3G56900

WD40 repeats

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
21066122 .. 21069483
3362 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56900.1

Sequence Viewer

Length: 1344 bp
ATGGCATCTTTTCCTCATCCCGGTTCCGTCACCGTCTGCGAGATCAACAGAGACTTGATTACGGCTCAGAACTTATCTGATGAGCGAGCTCAGGAGACTTATGGAAAAGTTCTTGGAATGGTGTTTAGCCCTGTTTCGTTCGACTCTACTCCTAGCTCTCTTCAGGAAAATGAAGGACAAGAGAATGGAGATAAGGCAAGTGGTGAGAGTAAAGGACTGGTTGCAACACTGCAGATGAAGGTTGCAGACTCTCTTAAACAGATTTTACAACCCACCGATGTAACTCTACTCTCAGAGATTGATCTTCAAGGAGTGAGTTGGCATCAAGGGAAGCATATTATTGCCTTTATATCCGGTGCAAATCAAGTTACAATTCGTGATTATGAGGACAAAGATGAGAAAGAACCTTGCATTTTGACAAGTGATTCACAAAGAAATGTTAAAGCCCTTGAGTGGAGACCAAATGGTGGAAAATCCCTATCCATTGCCTGTCGGGGAGGAATATGCATATGGGCTGCTTCATATCCGGGTAACATGGCATTGGTTAGATCTGGTGGTTCCGCATTGAGGGGAAGTCTCTCTCGAGGATCTGGAACTCGTTGGATTTTGGTGGACTTTCTTCGGTGTCAAAATGATGAGCAAATTAGTGCTCTCTCATGGAGCCCCTGTGGAAGGTATTTAGCATCAGCCTCATATGACAGTTCATCTTTCACCATATGGGATGTTTCTCAAGGGGCAGGGACACCTATTAGACGGGGACTAGGTGGAATATCAATGCTTAAATGGTCACCTACAGGAGACTACTTCTTTGCAGCAAGATTTGATGGGACTTTTTGTCTTTGGGAAACAAACACATGGACATCTGAACCCTGGTCTTTGTCTAGTGGATCTGGATCTGTCACGGGAGCGATATGGGATCCCGAAGGACGGTTTATCTTGATTTCGTTTTCGAAATCTTCAACACTGGGCTCTGTTCATTTCTCATCCAAGCCACCATCCTTGGATGCCCATCTATTACCAGTTGAATTGCCAGAGATTGCTTCTCTAACTGGCTGTGAGGGCATCGAGAAGATAGCATGGGATGCATCTGGAGAACGATTGGCTGTGTCGTACAAAGGAGGCGATGAAAATTACAAAGGATTGATTGCCATCTACGACACACGAAGGACACCTATTGTATCAGCATCACTAGTCGGTTTCATCAGAGGACCTGGAGAAAACCCGAAAGCTCTCTCCTTTTCATTCCATGACAAGTTCAAGCAAGGTCCACTCCTTTCTGTGTGTTGGAGCACCGGATTCTGTTGCACCTATCCTCTCATCTTCCGCTCACATGTTCTTCCTTAA

Protein Analysis

447

Amino Acids

48.49

Weight (kDa)

5.74

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_Aladin PF25460 101 - 439 3.7e-51 Aladin seven-bladed propeller
Beta-prop_WDR19_1st PF23389 210 - 322 5.9e-06 WDR19 first beta-propeller
Beta-prop_WDR5 PF25175 212 - 313 1.6e-09 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 213 - 326 2.1e-11 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 467
AccBSI CCGCTC 1 cut(s) 1326
AciI CCGC 2 cut(s) 561, 1324
AclWI GGATC 5 cut(s) 595, 895, 901, 911, 924
AcuI CTGAAG 1 cut(s) 146
AfaI GTAC 1 cut(s) 1112
AfiI CCNNNNNNNGG 6 cut(s) 20, 453, 467, 567, 672, 927
AflIII ACRYGT 1 cut(s) 1330
AgsI TTSAA 4 cut(s) 308, 960, 1025, 1258
AhdI GACNNNNNGTC 1 cut(s) 834
AhlI ACTAGT 1 cut(s) 1189
AjnI CCWGG 2 cut(s) 869, 1210
AluBI AGCT 3 cut(s) 89, 156, 1229
AluI AGCT 3 cut(s) 89, 156, 1229
Alw21I GWGCWC 3 cut(s) 91, 652, 1292
Alw26I GTCTC 5 cut(s) 45, 89, 451, 581, 792
AlwI GGATC 5 cut(s) 595, 895, 901, 911, 924
Ama87I CYCGRG 1 cut(s) 582
ApeKI GCWGC 2 cut(s) 515, 812
ArsI GACNNNNNNTTYG 2 cut(s) 791, 823
AspS9I GGNCC 2 cut(s) 1208, 1265
AsuC2I CCSGG 2 cut(s) 21, 528
AsuHPI GGTGA 4 cut(s) 22, 215, 703, 780
AsuII TTCGAA 1 cut(s) 950
AvaI CYCGRG 1 cut(s) 582
AvaII GGWCC 2 cut(s) 1208, 1265
BamHI GGATCC 1 cut(s) 916
BanII GRGCYC 3 cut(s) 91, 665, 971
Bbv12I GWGCWC 3 cut(s) 91, 652, 1292
BbvI GCAGC 2 cut(s) 502, 824
BccI CCATC 4 cut(s) 818, 1003, 1017, 1157
BceAI ACGGC 1 cut(s) 78
BciT130I CCWGG 2 cut(s) 871, 1212
BcnI CCSGG 2 cut(s) 21, 528
BcoDI GTCTC 5 cut(s) 45, 89, 451, 581, 792
BcuI ACTAGT 1 cut(s) 1189
BfaI CTAG 4 cut(s) 153, 761, 882, 1190
BfmI CTRYAG 2 cut(s) 230, 792
BglII AGATCT 1 cut(s) 548
BisI GCNGC 2 cut(s) 516, 813
BlsI GCNGC 2 cut(s) 517, 814
Bme1390I CCNGG 4 cut(s) 21, 528, 871, 1212
Bme18I GGWCC 2 cut(s) 1208, 1265
BmeRI GACNNNNNGTC 1 cut(s) 834
BmeT110I CYCGRG 1 cut(s) 582
BmgT120I GGNCC 2 cut(s) 1208, 1265
BmiI GGNNCC 4 cut(s) 25, 559, 662, 918
BmrFI CCNGG 4 cut(s) 21, 528, 871, 1212
BmrI ACTGGG 1 cut(s) 974
BmsI GCATC 8 cut(s) 14, 331, 692, 994, 1071, 1072, 1094, 1193
BmuI ACTGGG 1 cut(s) 974
BpmI CTGGAG 2 cut(s) 1110, 1233
Bpu10I CCTNAGC 1 cut(s) 90
Bpu14I TTCGAA 1 cut(s) 950
BpuEI CTTGAG 2 cut(s) 470, 714
BpuMI CCSGG 2 cut(s) 21, 528
BsaBI GATNNNNATC 3 cut(s) 892, 1008, 1148
BsaI GGTCTC 1 cut(s) 451
BsaJI CCNNGG 2 cut(s) 869, 999
BsaWI WCCGGW 2 cut(s) 353, 1292
BsaXI ACNNNNNCTCC 2 cut(s) 652, 682
Bsc4I CCNNNNNNNGG 6 cut(s) 20, 453, 467, 567, 672, 927
Bse1I ACTGG 4 cut(s) 222, 969, 1019, 1054
Bse3DI GCAATG 1 cut(s) 483
Bse8I GATNNNNATC 3 cut(s) 892, 1008, 1148
BseBI CCWGG 2 cut(s) 871, 1212
BseDI CCNNGG 2 cut(s) 869, 999
BseGI GGATG 6 cut(s) 16, 727, 983, 995, 1009, 1087
BseJI GATNNNNATC 3 cut(s) 892, 1008, 1148
BseLI CCNNNNNNNGG 6 cut(s) 20, 453, 467, 567, 672, 927
BseMI GCAATG 1 cut(s) 483
BseMII CTCAG 3 cut(s) 80, 104, 306
BseNI ACTGG 4 cut(s) 222, 969, 1019, 1054
BseXI GCAGC 2 cut(s) 502, 824
BsiHKAI GWGCWC 3 cut(s) 91, 652, 1292
BsiHKCI CYCGRG 1 cut(s) 582
BsiSI CCGG 4 cut(s) 21, 354, 527, 1293
BslFI GGGAC 3 cut(s) 754, 771, 841
BslI CCNNNNNNNGG 6 cut(s) 20, 453, 467, 567, 672, 927
BsmAI GTCTC 5 cut(s) 45, 89, 451, 581, 792
BsmFI GGGAC 3 cut(s) 754, 771, 841
Bso31I GGTCTC 1 cut(s) 451
BsoBI CYCGRG 1 cut(s) 582
Bsp119I TTCGAA 1 cut(s) 950
Bsp1286I GDGCHC 5 cut(s) 91, 652, 665, 971, 1292
Bsp143I GATC 7 cut(s) 42, 301, 548, 587, 887, 893, 916
BspACI CCGC 2 cut(s) 561, 1324
BspCNI CTCAG 3 cut(s) 79, 103, 305
BspLI GGNNCC 4 cut(s) 25, 559, 662, 918
BspMAI CTGCAG 1 cut(s) 234
BspPI GGATC 5 cut(s) 595, 895, 901, 911, 924
BspT104I TTCGAA 1 cut(s) 950
BspTNI GGTCTC 1 cut(s) 451
BsrBI CCGCTC 1 cut(s) 1326
BsrDI GCAATG 1 cut(s) 483
BsrI ACTGG 4 cut(s) 222, 969, 1019, 1054
BssECI CCNNGG 2 cut(s) 869, 999
BssMI GATC 7 cut(s) 42, 301, 548, 587, 887, 893, 916
BssT1I CCWWGG 1 cut(s) 999
Bst2UI CCWGG 2 cut(s) 871, 1212
Bst4CI ACNGT 3 cut(s) 34, 701, 930
Bst6I CTCTTC 1 cut(s) 165
BstAPI GCANNNNNTGC 1 cut(s) 1082
BstBI TTCGAA 1 cut(s) 950
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 3 cut(s) 66, 90, 292
BstEII GGTNACC 1 cut(s) 786
BstENI CCTNNNNNAGG 1 cut(s) 670
BstF5I GGATG 6 cut(s) 16, 727, 983, 995, 1009, 1087
BstKTI GATC 7 cut(s) 45, 304, 551, 590, 890, 896, 919
BstMAI GTCTC 5 cut(s) 45, 89, 451, 581, 792
BstMBI GATC 7 cut(s) 42, 301, 548, 587, 887, 893, 916
BstMWI GCNNNNNNNGC 2 cut(s) 1059, 1082
BstNI CCWGG 2 cut(s) 871, 1212
BstNSI RCATGY 1 cut(s) 1334
BstPI GGTNACC 1 cut(s) 786
BstSCI CCNGG 4 cut(s) 19, 526, 869, 1210
BstSFI CTRYAG 2 cut(s) 230, 792
BstV1I GCAGC 2 cut(s) 502, 824
BstX2I RGATCY 5 cut(s) 548, 587, 887, 893, 916
BstYI RGATCY 5 cut(s) 548, 587, 887, 893, 916
BtgZI GCGATG 1 cut(s) 1137
BtsCI GGATG 6 cut(s) 16, 727, 983, 995, 1009, 1087
BtsI GCAGTG 1 cut(s) 227
BtsIMutI CAGTG 2 cut(s) 227, 962
Cac8I GCNNGC 1 cut(s) 87
Cfr13I GGNCC 2 cut(s) 1208, 1265
Csp6I GTAC 1 cut(s) 1111
CspCI CAANNNNNGTGG 2 cut(s) 981, 1016
CviAII CATG 6 cut(s) 535, 657, 855, 1077, 1247, 1331
CviQI GTAC 1 cut(s) 1111
DdeI CTNAG 3 cut(s) 66, 90, 292
DpnI GATC 7 cut(s) 44, 303, 550, 589, 889, 895, 918
DpnII GATC 7 cut(s) 42, 301, 548, 587, 887, 893, 916
DriI GACNNNNNGTC 1 cut(s) 834
Eam1104I CTCTTC 1 cut(s) 165
Eam1105I GACNNNNNGTC 1 cut(s) 834
EarI CTCTTC 1 cut(s) 165
Ecl136II GAGCTC 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 999
Eco24I GRGCYC 3 cut(s) 91, 665, 971
Eco31I GGTCTC 1 cut(s) 451
Eco47I GGWCC 2 cut(s) 1208, 1265
Eco53kI GAGCTC 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 146
Eco88I CYCGRG 1 cut(s) 582
Eco91I GGTNACC 1 cut(s) 786
EcoICRI GAGCTC 1 cut(s) 89
EcoNI CCTNNNNNAGG 1 cut(s) 670
EcoO109I RGGNCCY 1 cut(s) 1208
EcoO65I GGTNACC 1 cut(s) 786
EcoRII CCWGG 2 cut(s) 869, 1210
EcoT14I CCWWGG 1 cut(s) 999
EcoT22I ATGCAT 2 cut(s) 509, 1087
EcoT38I GRGCYC 3 cut(s) 91, 665, 971
ErhI CCWWGG 1 cut(s) 999
FaeI CATG 6 cut(s) 538, 660, 858, 1080, 1250, 1334
FaqI GGGAC 3 cut(s) 754, 771, 841
FatI CATG 6 cut(s) 534, 656, 854, 1076, 1246, 1330
FauNDI CATATG 3 cut(s) 509, 694, 716
Fnu4HI GCNGC 2 cut(s) 516, 813
FokI GGATG 6 cut(s) 3, 734, 970, 982, 1016, 1094
FriOI GRGCYC 3 cut(s) 91, 665, 971
Fsp4HI GCNGC 2 cut(s) 516, 813
FspBI CTAG 4 cut(s) 153, 761, 882, 1190
GluI GCNGC 2 cut(s) 516, 813
GsuI CTGGAG 2 cut(s) 1110, 1233
HapII CCGG 4 cut(s) 21, 354, 527, 1293
Hin1II CATG 6 cut(s) 538, 660, 858, 1080, 1250, 1334
HinfI GANTC 4 cut(s) 143, 248, 425, 1296
HpaII CCGG 4 cut(s) 21, 354, 527, 1293
HphI GGTGA 4 cut(s) 22, 215, 703, 780
Hpy166II GTNNAC 2 cut(s) 613, 1268
Hpy188I TCNGA 5 cut(s) 69, 79, 295, 865, 1205
Hpy8I GTNNAC 2 cut(s) 613, 1268
HpyAV CCTTC 5 cut(s) 167, 232, 666, 917, 1158
HpyCH4III ACNGT 3 cut(s) 34, 701, 930
HpyCH4V TGCA 9 cut(s) 224, 232, 245, 359, 411, 507, 812, 1085, 1305
HpyF10VI GCNNNNNNNGC 2 cut(s) 1059, 1082
HpyF3I CTNAG 3 cut(s) 66, 90, 292
Hsp92II CATG 6 cut(s) 538, 660, 858, 1080, 1250, 1334
Kzo9I GATC 7 cut(s) 42, 301, 548, 587, 887, 893, 916
LmnI GCTCC 3 cut(s) 660, 905, 1287
Lsp1109I GCAGC 2 cut(s) 502, 824
LweI GCATC 8 cut(s) 14, 331, 692, 994, 1071, 1072, 1094, 1193
MaeI CTAG 4 cut(s) 153, 761, 882, 1190
MaeIII GTNAC 6 cut(s) 28, 280, 367, 530, 786, 898
MalI GATC 7 cut(s) 44, 303, 550, 589, 889, 895, 918
MbiI CCGCTC 1 cut(s) 1326
MboI GATC 7 cut(s) 42, 301, 548, 587, 887, 893, 916
MboII GAAGA 7 cut(s) 152, 296, 611, 948, 1081, 1312, 1328
MflI RGATCY 5 cut(s) 548, 587, 887, 893, 916
MhlI GDGCHC 5 cut(s) 91, 652, 665, 971, 1292
MluCI AATT 4 cut(s) 372, 642, 1025, 1129
MlyI GAGTC 2 cut(s) 137, 242
MmeI TCCRAC 2 cut(s) 581, 1265
Mph1103I ATGCAT 2 cut(s) 509, 1087
MseI TTAA 4 cut(s) 255, 441, 780, 1342
MspI CCGG 4 cut(s) 21, 354, 527, 1293
MspR9I CCNGG 4 cut(s) 21, 528, 871, 1212
MvaI CCWGG 2 cut(s) 871, 1212
MwoI GCNNNNNNNGC 2 cut(s) 1059, 1082
NciI CCSGG 2 cut(s) 21, 528
NdeI CATATG 3 cut(s) 509, 694, 716
NdeII GATC 7 cut(s) 42, 301, 548, 587, 887, 893, 916
NlaIII CATG 6 cut(s) 538, 660, 858, 1080, 1250, 1334
NlaIV GGNNCC 4 cut(s) 25, 559, 662, 918
NmuCI GTSAC 3 cut(s) 28, 786, 898
NsiI ATGCAT 2 cut(s) 509, 1087
NspI RCATGY 1 cut(s) 1334
NspV TTCGAA 1 cut(s) 950
PaeR7I CTCGAG 1 cut(s) 582
PciI ACATGT 1 cut(s) 1330
PfeI GAWTC 2 cut(s) 425, 1296
PflMI CCANNNNNTGG 1 cut(s) 467
PkrI GCNGC 2 cut(s) 517, 814
PleI GAGTC 2 cut(s) 137, 242
PpsI GAGTC 2 cut(s) 137, 242
PpuMI RGGWCCY 1 cut(s) 1208
PscI ACATGT 1 cut(s) 1330
Psp124BI GAGCTC 1 cut(s) 91
Psp5II RGGWCCY 1 cut(s) 1208
Psp6I CCWGG 2 cut(s) 869, 1210
PspEI GGTNACC 1 cut(s) 786
PspGI CCWGG 2 cut(s) 869, 1210
PspN4I GGNNCC 4 cut(s) 25, 559, 662, 918
PspPI GGNCC 2 cut(s) 1208, 1265
PspPPI RGGWCCY 1 cut(s) 1208
PstI CTGCAG 1 cut(s) 234
PsuI RGATCY 5 cut(s) 548, 587, 887, 893, 916
RsaI GTAC 1 cut(s) 1112
RsaNI GTAC 1 cut(s) 1111
SacI GAGCTC 1 cut(s) 91
SaqAI TTAA 4 cut(s) 255, 441, 780, 1342
SatI GCNGC 2 cut(s) 516, 813
Sau3AI GATC 7 cut(s) 42, 301, 548, 587, 887, 893, 916
Sau96I GGNCC 2 cut(s) 1208, 1265
SchI GAGTC 2 cut(s) 137, 242
ScrFI CCNGG 4 cut(s) 21, 528, 871, 1212
SduI GDGCHC 5 cut(s) 91, 652, 665, 971, 1292
SfaNI GCATC 8 cut(s) 14, 331, 692, 994, 1071, 1072, 1094, 1193
SfcI CTRYAG 2 cut(s) 230, 792
Sfr274I CTCGAG 1 cut(s) 582
SfuI TTCGAA 1 cut(s) 950
SinI GGWCC 2 cut(s) 1208, 1265
SlaI CTCGAG 1 cut(s) 582
SmlI CTYRAG 3 cut(s) 449, 582, 729
SmoI CTYRAG 3 cut(s) 449, 582, 729
SpeI ACTAGT 1 cut(s) 1189
Sse9I AATT 4 cut(s) 372, 642, 1025, 1129
SsiI CCGC 2 cut(s) 561, 1324
SspMI CTAG 4 cut(s) 153, 761, 882, 1190
SstI GAGCTC 1 cut(s) 91
StyD4I CCNGG 4 cut(s) 19, 526, 869, 1210
StyI CCWWGG 1 cut(s) 999
TaaI ACNGT 3 cut(s) 34, 701, 930
TaqI TCGA 4 cut(s) 141, 583, 950, 1065
TasI AATT 4 cut(s) 372, 642, 1025, 1129
TfiI GAWTC 2 cut(s) 425, 1296
Tru1I TTAA 4 cut(s) 255, 441, 780, 1342
Tru9I TTAA 4 cut(s) 255, 441, 780, 1342
TscAI CASTG 2 cut(s) 234, 969
TseFI GTSAC 3 cut(s) 28, 786, 898
TseI GCWGC 2 cut(s) 515, 812
Tsp45I GTSAC 3 cut(s) 28, 786, 898
TspDTI ATGAA 8 cut(s) 186, 251, 510, 693, 965, 1140, 1189, 1230
TspGWI ACGGA 1 cut(s) 16
TspRI CASTG 2 cut(s) 234, 969
Van91I CCANNNNNTGG 1 cut(s) 467
VpaK11BI GGWCC 2 cut(s) 1208, 1265
XagI CCTNNNNNAGG 1 cut(s) 670
XceI RCATGY 1 cut(s) 1334
XhoI CTCGAG 1 cut(s) 582
XspI CTAG 4 cut(s) 153, 761, 882, 1190
Zsp2I ATGCAT 2 cut(s) 509, 1087
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.