Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005614

Physical Location & Seq

Genomic Coordinates Forward (+)

51098412 .. 51104747

Gene Structure 6336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029905

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGCCTTGCTTTCCCCAACCCGGTTCCGTCACCGTTTGCGAAATCAATCGCGACCTAATCACCTCTGAAAACCTCTCGGATGATGGAGCCAAAGAAACTTATGGAAAGATTCTGGGAATCACATTCAGCCCGGTTCCATTTCAATCCGAAGTTGGGCCTCCACCGAGTCCGGACCGCGAAACAGCTCCGACAAAGGGACTCCTACAAAGCCTGTTCCATCCTAACCATGTGAACTTGTTACCGGAAGTTGATCTTCAGGGATTGAGCTGGCACCCACATAAACATGTTGTAGCATTTATATCTGGCTCAAATCAAGTTCTAGTTCGAGATTATGAGGATTCAGAAGGGAAGGAGCCATGCATTTTGGCTAATGAATCACAGAAAGACGTCAAGGTACTTGAATGGAGGCCAAATGGTGGGAGGACACTTTCTGTGGCATGTAGTGGTGGGATCTGCATTTGGGCCGCTTCTTTCCCTGGCAGTGTTGCATCTGTGAGATCTCGTGCTTCTTCCTTCTTGGGAACTCTCTCCAGAGGTTCTGGAATCCGATATACTTTGGTGGATTTTCTTCGCAGTCATAACGAGGAACAGATTACTGCACTTTCCTGGAGTCCTGATGGAAGATATCCAAACAAACTCATTTCTGGTTCATCATTTACCATATGGGATGTTGCTCAAGGGATTGGGACACCTATTCGACGCGGACTAGCTGGCATATCAATGCTGAAGTGGTCACCAACTGGCGATTACTTTTTCTCCGCAAAATTTGATGGAACGTTTTATCTTTGGGAGACAAACACATGGGCATCTGAATCATGGTCATCAACTAGCGGCTTTGTAAAGGGAGCATCATGGGATCCTGATGGGCGTATGATACTTCTTGCCTTCTCTAAATCTTCAACTTTGGGGTCCATTCACTTTGCTTCAAAGCCGCCATCTCTGGATGCACACCTATTACCTGTTGAACTACCAGAGATTACGGCCTTAACAAACAGTCAGGGCATTGAGAAGATAGCTTGGGATGCTTCGGGAGAGCGATTGGCCGTATCTTTTAAAGATGGCGATGAGTTGTATAGAGGTCTGATTGCCATCTATGATGTTAGAAGGACTCCTCTTATCTCTGCATCATTAATTGGATTTATCAGAGGACCTGGGGAGTATCCAAAGCCTATAGCATTTTCATTCCATGACAAGTTTAAGCAAGGACCATTGCTTTCTGTGTGTTGGAGCAGTGGATTTTGCTGTACCTATCCTCTGATATTTCGTTCCCACGTTCTTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003008 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006810 GO:0006913 GO:0007610 GO:0007611 GO:0007612 GO:0008150 GO:0009566 GO:0012505 GO:0015630 GO:0016020 GO:0019953 GO:0022414 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046907 GO:0050877 GO:0050890 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

428

Amino Acids

46.71

Weight (kDa)

6.22

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_IFT140_1st	PF23383	83 - 162	3.9e-06	IFT140 first beta-propeller
Beta-prop_Aladin	PF25460	85 - 419	1.6e-52	Aladin seven-bladed propeller
Beta-prop_THOC3	PF25174	127 - 353	1.5e-10	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	194 - 293	1.5e-06	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56900
fragaria_vesca	FvH4_7g04320 FvH4_7g04320 FvH4_7g04320 FvH4_7g04320
malus_domestica	MD12G1112000.v1.1 MD14G1101000.v1.1 MD14G1101100.v1.1
prunus_persica	Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1
pyrus_communis	pycom12g09160 pycom14g08800
rosa_chinensis	RchiOBHm_Chr1g0329271 RchiOBHm_Chr1g0329281
rosa_laevigata	RLG00000029905
rosa_multiflora	Rmu_co8376675.1_g000001 Rmu_sc0000203.1_g000006 Rmu_sc0010272.1_g000001
rosa_rugosa	Rorug01G0077700
rosa_samantha	Rh1AG096600 Rh1BG077300 Rh1CG093300 Rh1DG099600 Rh1DG100000
rosa_wichuraiana	Rw1G007480 Rw1G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	390
AccB1I	GGYRCC	1 cut(s)	270
AccB7I	CCANNNNNTGG	1 cut(s)	416
AccII	CGCG	3 cut(s)	51, 177, 702
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	6 cut(s)	175, 465, 702, 759, 831, 932
AclI	AACGTT	1 cut(s)	776
AclWI	GGATC	3 cut(s)	458, 851, 864
AcoI	YGGCCR	1 cut(s)	1041
AcsI	RAATTY	1 cut(s)	764
AcuI	CTGAAG	2 cut(s)	239, 746
AcyI	GRCGYC	1 cut(s)	387
AfaI	GTAC	2 cut(s)	396, 1246
AfiI	CCNNNNNNNGG	4 cut(s)	20, 153, 194, 416
AflIII	ACRYGT	1 cut(s)	283
AgsI	TTSAA	5 cut(s)	143, 401, 900, 927, 965
AjnI	CCWGG	3 cut(s)	475, 605, 1150
AluBI	AGCT	4 cut(s)	185, 267, 710, 1016
AluI	AGCT	4 cut(s)	185, 267, 710, 1016
Alw26I	GTCTC	1 cut(s)	785
AlwI	GGATC	3 cut(s)	458, 851, 864
Aor13HI	TCCGGA	1 cut(s)	169
AoxI	GGCC	5 cut(s)	155, 407, 462, 981, 1041
ApoI	RAATTY	1 cut(s)	764
AseI	ATTAAT	1 cut(s)	1130
AspS9I	GGNCC	6 cut(s)	155, 172, 462, 909, 1148, 1205
AsuC2I	CCSGG	2 cut(s)	21, 131
AsuHPI	GGTGA	3 cut(s)	22, 52, 726
AvaII	GGWCC	4 cut(s)	172, 909, 1148, 1205
BamHI	GGATCC	1 cut(s)	856
BanI	GGYRCC	1 cut(s)	270
BauI	CACGAG	1 cut(s)	501
BccI	CCATC	8 cut(s)	77, 225, 611, 764, 857, 943, 1052, 1097
BceAI	ACGGC	2 cut(s)	996, 1028
BciT130I	CCWGG	3 cut(s)	477, 607, 1152
BciVI	GTATCC	1 cut(s)	1170
BcnI	CCSGG	2 cut(s)	21, 131
BcoDI	GTCTC	1 cut(s)	785
BfaI	CTAG	3 cut(s)	320, 707, 828
BfmI	CTRYAG	1 cut(s)	1170
BfuI	GTATCC	1 cut(s)	1170
BglII	AGATCT	1 cut(s)	497
BisI	GCNGC	3 cut(s)	465, 832, 932
BlsI	GCNGC	3 cut(s)	466, 833, 933
Bme1390I	CCNGG	5 cut(s)	21, 131, 477, 607, 1152
Bme18I	GGWCC	4 cut(s)	172, 909, 1148, 1205
BmgT120I	GGNCC	6 cut(s)	155, 172, 462, 909, 1148, 1205
BmiI	GGNNCC	7 cut(s)	25, 88, 135, 272, 354, 858, 910
BmrFI	CCNGG	5 cut(s)	21, 131, 477, 607, 1152
BmsI	GCATC	6 cut(s)	497, 815, 857, 934, 1012, 1133
BpmI	CTGGAG	2 cut(s)	514, 628
BpuEI	CTTGAG	1 cut(s)	660
BpuMI	CCSGG	2 cut(s)	21, 131
BsaBI	GATNNNNATC	1 cut(s)	1088
BsaHI	GRCGYC	1 cut(s)	387
BsaJI	CCNNGG	2 cut(s)	475, 1151
BsaWI	WCCGGW	2 cut(s)	169, 241
BsaXI	ACNNNNNCTCC	2 cut(s)	740, 770
Bsc4I	CCNNNNNNNGG	4 cut(s)	20, 153, 194, 416
Bse1I	ACTGG	1 cut(s)	745
Bse3DI	GCAATG	1 cut(s)	1208
Bse8I	GATNNNNATC	1 cut(s)	1088
BseAI	TCCGGA	1 cut(s)	169
BseBI	CCWGG	3 cut(s)	477, 607, 1152
BseDI	CCNNGG	2 cut(s)	475, 1151
BseGI	GGATG	5 cut(s)	85, 217, 673, 949, 1027
BseJI	GATNNNNATC	1 cut(s)	1088
BseLI	CCNNNNNNNGG	4 cut(s)	20, 153, 194, 416
BseMI	GCAATG	1 cut(s)	1208
BseNI	ACTGG	1 cut(s)	745
BseRI	GAGGAG	1 cut(s)	1101
BsgI	GTGCAG	1 cut(s)	582
Bsh1236I	CGCG	3 cut(s)	51, 177, 702
BshFI	GGCC	5 cut(s)	157, 409, 464, 983, 1043
BshNI	GGYRCC	1 cut(s)	270
BsiSI	CCGG	4 cut(s)	21, 131, 170, 242
BslFI	GGGAC	2 cut(s)	210, 700
BslI	CCNNNNNNNGG	4 cut(s)	20, 153, 194, 416
BsmAI	GTCTC	1 cut(s)	785
BsmFI	GGGAC	2 cut(s)	210, 700
BsnI	GGCC	5 cut(s)	157, 409, 464, 983, 1043
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	4 cut(s)	250, 450, 497, 856
Bsp68I	TCGCGA	1 cut(s)	51
BspACI	CCGC	6 cut(s)	175, 465, 702, 759, 831, 932
BspANI	GGCC	5 cut(s)	157, 409, 464, 983, 1043
BspEI	TCCGGA	1 cut(s)	169
BspFNI	CGCG	3 cut(s)	51, 177, 702
BspLI	GGNNCC	7 cut(s)	25, 88, 135, 272, 354, 858, 910
BspPI	GGATC	3 cut(s)	458, 851, 864
BspT107I	GGYRCC	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	1208
BsrI	ACTGG	1 cut(s)	745
BssECI	CCNNGG	2 cut(s)	475, 1151
BssMI	GATC	4 cut(s)	250, 450, 497, 856
BssNI	GRCGYC	1 cut(s)	387
BssSI	CACGAG	1 cut(s)	501
Bst2BI	CACGAG	1 cut(s)	501
Bst2UI	CCWGG	3 cut(s)	477, 607, 1152
Bst4CI	ACNGT	2 cut(s)	34, 995
BstACI	GRCGYC	1 cut(s)	387
BstC8I	GCNNGC	2 cut(s)	269, 712
BstDEI	CTNAG	1 cut(s)	1281
BstEII	GGTNACC	1 cut(s)	732
BstF5I	GGATG	5 cut(s)	85, 217, 673, 949, 1027
BstFNI	CGCG	3 cut(s)	51, 177, 702
BstKTI	GATC	4 cut(s)	253, 453, 500, 859
BstMAI	GTCTC	1 cut(s)	785
BstMBI	GATC	4 cut(s)	250, 450, 497, 856
BstMWI	GCNNNNNNNGC	1 cut(s)	1022
BstNI	CCWGG	3 cut(s)	477, 607, 1152
BstNSI	RCATGY	2 cut(s)	287, 441
BstPI	GGTNACC	1 cut(s)	732
BstSCI	CCNGG	5 cut(s)	19, 129, 475, 605, 1150
BstSFI	CTRYAG	1 cut(s)	1170
BstUI	CGCG	3 cut(s)	51, 177, 702
BstX2I	RGATCY	3 cut(s)	450, 497, 856
BstYI	RGATCY	3 cut(s)	450, 497, 856
BsuI	GTATCC	1 cut(s)	1170
BsuRI	GGCC	5 cut(s)	157, 409, 464, 983, 1043
BtgZI	GCGATG	1 cut(s)	1077
BtsCI	GGATG	5 cut(s)	85, 217, 673, 949, 1027
BtsI	GCAGTG	2 cut(s)	487, 1237
BtsIMutI	CAGTG	2 cut(s)	487, 1237
BtuMI	TCGCGA	1 cut(s)	51
Cac8I	GCNNGC	2 cut(s)	269, 712
Cfr13I	GGNCC	6 cut(s)	155, 172, 462, 909, 1148, 1205
CpoI	CGGWCCG	1 cut(s)	172
CseI	GACGC	1 cut(s)	708
Csp6I	GTAC	2 cut(s)	395, 1245
CspI	CGGWCCG	1 cut(s)	172
CviAII	CATG	8 cut(s)	227, 284, 357, 438, 801, 816, 852, 1187
CviQI	GTAC	2 cut(s)	395, 1245
DdeI	CTNAG	1 cut(s)	1281
DpnI	GATC	4 cut(s)	252, 452, 499, 858
DpnII	GATC	4 cut(s)	250, 450, 497, 856
DraI	TTTAAA	1 cut(s)	1054
EaeI	YGGCCR	1 cut(s)	1041
Eco32I	GATATC	1 cut(s)	626
Eco47I	GGWCC	4 cut(s)	172, 909, 1148, 1205
Eco57I	CTGAAG	2 cut(s)	239, 746
Eco91I	GGTNACC	1 cut(s)	732
EcoO109I	RGGNCCY	1 cut(s)	1148
EcoO65I	GGTNACC	1 cut(s)	732
EcoRII	CCWGG	3 cut(s)	475, 605, 1150
EcoRV	GATATC	1 cut(s)	626
EcoT22I	ATGCAT	1 cut(s)	362
FaeI	CATG	8 cut(s)	230, 287, 360, 441, 804, 819, 855, 1190
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FaqI	GGGAC	2 cut(s)	210, 700
FatI	CATG	8 cut(s)	226, 283, 356, 437, 800, 815, 851, 1186
FauNDI	CATATG	1 cut(s)	662
Fnu4HI	GCNGC	3 cut(s)	465, 832, 932
FokI	GGATG	5 cut(s)	92, 204, 680, 956, 1034
Fsp4HI	GCNGC	3 cut(s)	465, 832, 932
FspBI	CTAG	3 cut(s)	320, 707, 828
GluI	GCNGC	3 cut(s)	465, 832, 932
GsuI	CTGGAG	2 cut(s)	514, 628
HaeIII	GGCC	5 cut(s)	157, 409, 464, 983, 1043
HapII	CCGG	4 cut(s)	21, 131, 170, 242
HgaI	GACGC	1 cut(s)	708
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	8 cut(s)	230, 287, 360, 441, 804, 819, 855, 1190
HpaII	CCGG	4 cut(s)	21, 131, 170, 242
HphI	GGTGA	3 cut(s)	22, 52, 726
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188III	TCNNGA	9 cut(s)	50, 170, 326, 531, 540, 614, 860, 941, 1029
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	1 cut(s)	702
HpyAV	CCTTC	5 cut(s)	338, 343, 523, 895, 1098
HpyCH4III	ACNGT	2 cut(s)	34, 995
HpyCH4IV	ACGT	3 cut(s)	387, 776, 1272
HpyCH4V	TGCA	6 cut(s)	360, 456, 488, 599, 947, 1124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1022
HpyF3I	CTNAG	1 cut(s)	1281
HpySE526I	ACGT	3 cut(s)	387, 776, 1272
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	8 cut(s)	230, 287, 360, 441, 804, 819, 855, 1190
Kpn2I	TCCGGA	1 cut(s)	169
Kzo9I	GATC	4 cut(s)	250, 450, 497, 856
LmnI	GCTCC	5 cut(s)	86, 190, 352, 845, 1227
LweI	GCATC	6 cut(s)	497, 815, 857, 934, 1012, 1133
MaeI	CTAG	3 cut(s)	320, 707, 828
MaeII	ACGT	3 cut(s)	387, 776, 1272
MaeIII	GTNAC	3 cut(s)	28, 237, 732
MalI	GATC	4 cut(s)	252, 452, 499, 858
MboI	GATC	4 cut(s)	250, 450, 497, 856
MboII	GAAGA	7 cut(s)	245, 501, 560, 633, 888, 1021, 1268
MflI	RGATCY	3 cut(s)	450, 497, 856
MluCI	AATT	2 cut(s)	764, 1131
MlyI	GAGTC	4 cut(s)	175, 192, 619, 1102
MmeI	TCCRAC	2 cut(s)	212, 1205
Mph1103I	ATGCAT	1 cut(s)	362
MroI	TCCGGA	1 cut(s)	169
MseI	TTAA	4 cut(s)	986, 1053, 1130, 1197
MslI	CAYNNNNRTG	2 cut(s)	282, 719
MspI	CCGG	4 cut(s)	21, 131, 170, 242
MspR9I	CCNGG	5 cut(s)	21, 131, 477, 607, 1152
MvaI	CCWGG	3 cut(s)	477, 607, 1152
MvnI	CGCG	3 cut(s)	51, 177, 702
MwoI	GCNNNNNNNGC	1 cut(s)	1022
NciI	CCSGG	2 cut(s)	21, 131
NdeI	CATATG	1 cut(s)	662
NdeII	GATC	4 cut(s)	250, 450, 497, 856
NlaIII	CATG	8 cut(s)	230, 287, 360, 441, 804, 819, 855, 1190
NlaIV	GGNNCC	7 cut(s)	25, 88, 135, 272, 354, 858, 910
NmuCI	GTSAC	2 cut(s)	28, 732
NruI	TCGCGA	1 cut(s)	51
NsiI	ATGCAT	1 cut(s)	362
NspI	RCATGY	2 cut(s)	287, 441
PciI	ACATGT	1 cut(s)	283
PfeI	GAWTC	6 cut(s)	109, 117, 338, 374, 543, 812
PflMI	CCANNNNNTGG	1 cut(s)	416
PfoI	TCCNGGA	1 cut(s)	605
PkrI	GCNGC	3 cut(s)	466, 833, 933
PleI	GAGTC	4 cut(s)	174, 192, 618, 1102
PpsI	GAGTC	4 cut(s)	174, 192, 618, 1102
PpuMI	RGGWCCY	1 cut(s)	1148
PscI	ACATGT	1 cut(s)	283
PshBI	ATTAAT	1 cut(s)	1130
Psp1406I	AACGTT	1 cut(s)	776
Psp5II	RGGWCCY	1 cut(s)	1148
Psp6I	CCWGG	3 cut(s)	475, 605, 1150
PspEI	GGTNACC	1 cut(s)	732
PspGI	CCWGG	3 cut(s)	475, 605, 1150
PspN4I	GGNNCC	7 cut(s)	25, 88, 135, 272, 354, 858, 910
PspPI	GGNCC	6 cut(s)	155, 172, 462, 909, 1148, 1205
PspPPI	RGGWCCY	1 cut(s)	1148
PsuI	RGATCY	3 cut(s)	450, 497, 856
RruI	TCGCGA	1 cut(s)	51
RsaI	GTAC	2 cut(s)	396, 1246
RsaNI	GTAC	2 cut(s)	395, 1245
RseI	CAYNNNNRTG	2 cut(s)	282, 719
Rsr2I	CGGWCCG	1 cut(s)	172
RsrII	CGGWCCG	1 cut(s)	172
SaqAI	TTAA	4 cut(s)	986, 1053, 1130, 1197
SatI	GCNGC	3 cut(s)	465, 832, 932
Sau3AI	GATC	4 cut(s)	250, 450, 497, 856
Sau96I	GGNCC	6 cut(s)	155, 172, 462, 909, 1148, 1205
SchI	GAGTC	4 cut(s)	175, 192, 619, 1102
ScrFI	CCNGG	5 cut(s)	21, 131, 477, 607, 1152
SfaNI	GCATC	6 cut(s)	497, 815, 857, 934, 1012, 1133
SfcI	CTRYAG	1 cut(s)	1170
SinI	GGWCC	4 cut(s)	172, 909, 1148, 1205
SmiMI	CAYNNNNRTG	2 cut(s)	282, 719
SmlI	CTYRAG	1 cut(s)	675
SmoI	CTYRAG	1 cut(s)	675
Sse9I	AATT	2 cut(s)	764, 1131
SsiI	CCGC	6 cut(s)	175, 465, 702, 759, 831, 932
SspMI	CTAG	3 cut(s)	320, 707, 828
StyD4I	CCNGG	5 cut(s)	19, 129, 475, 605, 1150
TaaI	ACNGT	2 cut(s)	34, 995
TaiI	ACGT	3 cut(s)	390, 779, 1275
TaqI	TCGA	2 cut(s)	325, 697
TasI	AATT	2 cut(s)	764, 1131
TauI	GCSGC	3 cut(s)	467, 834, 934
TfiI	GAWTC	6 cut(s)	109, 117, 338, 374, 543, 812
Tru1I	TTAA	4 cut(s)	986, 1053, 1130, 1197
Tru9I	TTAA	4 cut(s)	986, 1053, 1130, 1197
TscAI	CASTG	2 cut(s)	487, 1237
TseFI	GTSAC	2 cut(s)	28, 732
Tsp45I	GTSAC	2 cut(s)	28, 732
TspDTI	ATGAA	3 cut(s)	387, 639, 1170
TspGWI	ACGGA	1 cut(s)	16
TspRI	CASTG	2 cut(s)	487, 1237
Van91I	CCANNNNNTGG	1 cut(s)	416
VpaK11BI	GGWCC	4 cut(s)	172, 909, 1148, 1205
VspI	ATTAAT	1 cut(s)	1130
XapI	RAATTY	1 cut(s)	764
XceI	RCATGY	2 cut(s)	287, 441
XspI	CTAG	3 cut(s)	320, 707, 828
ZraI	GACGTC	1 cut(s)	388
Zsp2I	ATGCAT	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.