Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0005614

Physical Location & Seq

Genomic Coordinates Reverse (-)

10041136 .. 10043563

Gene Structure 2428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g08800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGTATTCAGCCCAGTTCCGCTTCAATCGGATCAGCTGGTGCGGCCACCGAGTCCTGACCAGGACCCCCAGCAAGTTGTAACAACTCCAACAAAGGGAATTCTACAAAATTTGCAGGGGATTCTTAACCTCACACCTCTCTTCCGTCCTAATCATGTAAGCTTATTACCAGAAGTTGATCTTAAAGGAGTGAGCTGGCACCAACATAAACTTGTTGTAGCGCTTATATCTGGCCCAAATCAAGTTATAGTTTGGGATTTCGAAGGGAAGGAGCCATGCATTTTGGCCAATGAGTCCCAAAGAGAGGTCAAAGTACTTGAATGGAGGCCAAACGGTGGGAGACAACTTGCCGTAGCATGCAAGCACGCTATAAGTTGTAAAGCTGAATTTCTCTCACTGCATGTGCTTGATTTCAGAGGTGGAATTTGCATTTGGGCTGCTTCTTTCCCAGGAATTGCAGCATCTATCAGATCTGGTTCTTCTTCCTTCCTGGGAACTCTCTCTAGAGGTTCTGGAATTCGATGTACTTTGGTGGATTTTCTTCGAAGTCATAACGAGGAACAGATTAGTGCATTGTCATGGAGTCCTGATGGAAGATATCCAAACAATCTCTATTCTGGTTTTCCATTATGGTTAAACTTAAGAGACTCTACATTACATGAATATGGAGGCTTTCTTACAATTTATCACTGTCATCTATATGCAAACTTTATAAAAAATTTTGAGAAAACTTTATGTTTCTGTTTTACTTTTGCATTCACTTTCTCTATAGTATGTTGTGGAATCAATTTCATTTTTTATACATGGATATTCTCAAGCAGGAAAAAATGCCCCATTTTATTTGTATTGAAAAAGAGCCTTTATTTTCAGATTAATTTCACACTTACTTTTGTTCAGTCGTGCTATATGGGATTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003008 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006810 GO:0006913 GO:0007610 GO:0007611 GO:0007612 GO:0008150 GO:0009566 GO:0012505 GO:0015630 GO:0016020 GO:0019953 GO:0022414 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046907 GO:0050877 GO:0050890 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

307

Amino Acids

34.55

Weight (kDa)

8.7

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56900
fragaria_vesca	FvH4_7g04320 FvH4_7g04320 FvH4_7g04320 FvH4_7g04320
malus_domestica	MD12G1112000.v1.1 MD14G1101000.v1.1 MD14G1101100.v1.1
prunus_persica	Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1
pyrus_communis	pycom12g09160 pycom14g08800
rosa_chinensis	RchiOBHm_Chr1g0329271 RchiOBHm_Chr1g0329281
rosa_laevigata	RLG00000029905
rosa_multiflora	Rmu_co8376675.1_g000001 Rmu_sc0000203.1_g000006 Rmu_sc0010272.1_g000001
rosa_rugosa	Rorug01G0077700
rosa_samantha	Rh1AG096600 Rh1BG077300 Rh1CG093300 Rh1DG099600 Rh1DG100000
rosa_wichuraiana	Rw1G007480 Rw1G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	713
AccB1I	GGYRCC	1 cut(s)	198
AccB7I	CCANNNNNTGG	1 cut(s)	335
AciI	CCGC	2 cut(s)	20, 43
AclWI	GGATC	1 cut(s)	39
AcoI	YGGCCR	2 cut(s)	44, 285
AcsI	RAATTY	6 cut(s)	99, 109, 386, 423, 516, 718
AfaI	GTAC	2 cut(s)	315, 526
AfeI	AGCGCT	1 cut(s)	222
AfiI	CCNNNNNNNGG	3 cut(s)	95, 304, 335
AflII	CTTAAG	1 cut(s)	640
AgsI	TTSAA	3 cut(s)	26, 320, 850
AjnI	CCWGG	3 cut(s)	60, 448, 489
AjuI	GAANNNNNNNTTGG	2 cut(s)	415, 447
AluBI	AGCT	4 cut(s)	37, 162, 195, 383
AluI	AGCT	4 cut(s)	37, 162, 195, 383
Alw26I	GTCTC	2 cut(s)	334, 639
AlwI	GGATC	1 cut(s)	39
Aor51HI	AGCGCT	1 cut(s)	222
AoxI	GGCC	4 cut(s)	44, 232, 285, 326
ApeKI	GCWGC	2 cut(s)	437, 458
ApoI	RAATTY	6 cut(s)	99, 109, 386, 423, 516, 718
AseI	ATTAAT	1 cut(s)	873
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	2 cut(s)	64, 233
AsuII	TTCGAA	2 cut(s)	261, 544
AvaII	GGWCC	1 cut(s)	64
BalI	TGGCCA	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	198
BbvI	GCAGC	2 cut(s)	424, 470
BccI	CCATC	1 cut(s)	584
BceAI	ACGGC	1 cut(s)	335
BciT130I	CCWGG	3 cut(s)	62, 450, 491
BcoDI	GTCTC	2 cut(s)	334, 639
BfaI	CTAG	1 cut(s)	504
BfmI	CTRYAG	1 cut(s)	768
BfoI	RGCGCY	1 cut(s)	224
BfrI	CTTAAG	1 cut(s)	640
BglII	AGATCT	1 cut(s)	470
BisI	GCNGC	3 cut(s)	44, 438, 459
BlsI	GCNGC	3 cut(s)	45, 439, 460
BmcAI	AGTACT	1 cut(s)	315
Bme1390I	CCNGG	3 cut(s)	62, 450, 491
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	2 cut(s)	64, 233
BmiI	GGNNCC	3 cut(s)	66, 200, 273
BmrFI	CCNGG	3 cut(s)	62, 450, 491
BmrI	ACTGGG	1 cut(s)	8
BmsI	GCATC	1 cut(s)	470
BmuI	ACTGGG	1 cut(s)	8
Bpu14I	TTCGAA	2 cut(s)	261, 544
BpuEI	CTTGAG	1 cut(s)	799
BsaJI	CCNNGG	2 cut(s)	448, 490
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 304, 335
Bse1I	ACTGG	1 cut(s)	14
BseBI	CCWGG	3 cut(s)	62, 450, 491
BseDI	CCNNGG	2 cut(s)	448, 490
BseLI	CCNNNNNNNGG	3 cut(s)	95, 304, 335
BseNI	ACTGG	1 cut(s)	14
BseXI	GCAGC	2 cut(s)	424, 470
BseYI	CCCAGC	1 cut(s)	69
BshFI	GGCC	4 cut(s)	46, 234, 287, 328
BshNI	GGYRCC	1 cut(s)	198
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	3 cut(s)	95, 304, 335
BsmAI	GTCTC	2 cut(s)	334, 639
BsmFI	GGGAC	1 cut(s)	280
BsmI	GAATGC	1 cut(s)	755
BsnI	GGCC	4 cut(s)	46, 234, 287, 328
Bsp119I	TTCGAA	2 cut(s)	261, 544
Bsp143I	GATC	3 cut(s)	31, 178, 470
BspACI	CCGC	2 cut(s)	20, 43
BspANI	GGCC	4 cut(s)	46, 234, 287, 328
BspLI	GGNNCC	3 cut(s)	66, 200, 273
BspPI	GGATC	1 cut(s)	39
BspT104I	TTCGAA	2 cut(s)	261, 544
BspT107I	GGYRCC	1 cut(s)	198
BspTI	CTTAAG	1 cut(s)	640
BsrI	ACTGG	1 cut(s)	14
BssECI	CCNNGG	2 cut(s)	448, 490
BssMI	GATC	3 cut(s)	31, 178, 470
Bst2UI	CCWGG	3 cut(s)	62, 450, 491
Bst4CI	ACNGT	2 cut(s)	335, 692
Bst6I	CTCTTC	1 cut(s)	146
BstAFI	CTTAAG	1 cut(s)	640
BstBI	TTCGAA	2 cut(s)	261, 544
BstC8I	GCNNGC	4 cut(s)	197, 358, 362, 366
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	3 cut(s)	34, 181, 473
BstMAI	GTCTC	2 cut(s)	334, 639
BstMBI	GATC	3 cut(s)	31, 178, 470
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNI	CCWGG	3 cut(s)	62, 450, 491
BstNSI	RCATGY	2 cut(s)	360, 404
BstSCI	CCNGG	3 cut(s)	60, 448, 489
BstSFI	CTRYAG	1 cut(s)	768
BstV1I	GCAGC	2 cut(s)	424, 470
BstX2I	RGATCY	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	470
BsuRI	GGCC	4 cut(s)	46, 234, 287, 328
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	2 cut(s)	395, 688
Cac8I	GCNNGC	4 cut(s)	197, 358, 362, 366
CfoI	GCGC	1 cut(s)	223
Cfr13I	GGNCC	2 cut(s)	64, 233
Csp6I	GTAC	2 cut(s)	314, 525
CviAII	CATG	7 cut(s)	155, 276, 357, 401, 579, 659, 804
CviQI	GTAC	2 cut(s)	314, 525
DpnI	GATC	3 cut(s)	33, 180, 472
DpnII	GATC	3 cut(s)	31, 178, 470
EaeI	YGGCCR	2 cut(s)	44, 285
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco32I	GATATC	1 cut(s)	599
Eco47I	GGWCC	1 cut(s)	64
Eco47III	AGCGCT	1 cut(s)	222
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRI	GAATTC	2 cut(s)	99, 516
EcoRII	CCWGG	3 cut(s)	60, 448, 489
EcoRV	GATATC	1 cut(s)	599
EcoT22I	ATGCAT	1 cut(s)	281
FaeI	CATG	7 cut(s)	158, 279, 360, 404, 582, 662, 807
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	7 cut(s)	154, 275, 356, 400, 578, 658, 803
Fnu4HI	GCNGC	3 cut(s)	44, 438, 459
Fsp4HI	GCNGC	3 cut(s)	44, 438, 459
FspBI	CTAG	1 cut(s)	504
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	3 cut(s)	44, 438, 459
GsaI	CCCAGC	1 cut(s)	73
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	4 cut(s)	46, 234, 287, 328
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	7 cut(s)	158, 279, 360, 404, 582, 662, 807
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	6 cut(s)	52, 121, 293, 583, 647, 783
Hpy188I	TCNGA	4 cut(s)	31, 416, 470, 870
Hpy188III	TCNNGA	4 cut(s)	56, 504, 513, 587
HpyAV	CCTTC	3 cut(s)	257, 262, 496
HpyCH4III	ACNGT	2 cut(s)	335, 692
HpyCH4V	TGCA	9 cut(s)	115, 279, 360, 400, 429, 458, 572, 704, 755
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
Hsp92II	CATG	7 cut(s)	158, 279, 360, 404, 582, 662, 807
HspAI	GCGC	1 cut(s)	221
Kzo9I	GATC	3 cut(s)	31, 178, 470
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	2 cut(s)	424, 470
LweI	GCATC	1 cut(s)	470
MaeI	CTAG	1 cut(s)	504
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	3 cut(s)	33, 180, 472
MboI	GATC	3 cut(s)	31, 178, 470
MboII	GAAGA	5 cut(s)	133, 471, 474, 533, 606
MflI	RGATCY	1 cut(s)	470
MlsI	TGGCCA	1 cut(s)	287
MluNI	TGGCCA	1 cut(s)	287
MlyI	GAGTC	4 cut(s)	61, 302, 592, 641
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	8 cut(s)	140, 147, 298, 318, 410, 500, 550, 662
Mox20I	TGGCCA	1 cut(s)	287
Mph1103I	ATGCAT	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	5 cut(s)	126, 183, 635, 641, 873
MslI	CAYNNNNRTG	3 cut(s)	577, 663, 699
Msp20I	TGGCCA	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	37
MspCI	CTTAAG	1 cut(s)	640
MspR9I	CCNGG	3 cut(s)	62, 450, 491
Mva1269I	GAATGC	1 cut(s)	755
MvaI	CCWGG	3 cut(s)	62, 450, 491
MwoI	GCNNNNNNNGC	1 cut(s)	43
NdeII	GATC	3 cut(s)	31, 178, 470
NlaIII	CATG	7 cut(s)	158, 279, 360, 404, 582, 662, 807
NlaIV	GGNNCC	3 cut(s)	66, 200, 273
NsiI	ATGCAT	1 cut(s)	281
NspI	RCATGY	2 cut(s)	360, 404
NspV	TTCGAA	2 cut(s)	261, 544
PaeI	GCATGC	1 cut(s)	360
PctI	GAATGC	1 cut(s)	755
PfeI	GAWTC	2 cut(s)	121, 783
PflMI	CCANNNNNTGG	1 cut(s)	335
PkrI	GCNGC	3 cut(s)	45, 439, 460
PleI	GAGTC	4 cut(s)	60, 301, 591, 641
PpsI	GAGTC	4 cut(s)	60, 301, 591, 641
PpuMI	RGGWCCY	1 cut(s)	64
PshBI	ATTAAT	1 cut(s)	873
PsiI	TTATAA	1 cut(s)	713
Psp5II	RGGWCCY	1 cut(s)	64
Psp6I	CCWGG	3 cut(s)	60, 448, 489
PspFI	CCCAGC	1 cut(s)	69
PspGI	CCWGG	3 cut(s)	60, 448, 489
PspN4I	GGNNCC	3 cut(s)	66, 200, 273
PspPI	GGNCC	2 cut(s)	64, 233
PspPPI	RGGWCCY	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	470
PvuII	CAGCTG	1 cut(s)	37
RsaI	GTAC	2 cut(s)	315, 526
RsaNI	GTAC	2 cut(s)	314, 525
RseI	CAYNNNNRTG	3 cut(s)	577, 663, 699
SaqAI	TTAA	5 cut(s)	126, 183, 635, 641, 873
SatI	GCNGC	3 cut(s)	44, 438, 459
Sau3AI	GATC	3 cut(s)	31, 178, 470
Sau96I	GGNCC	2 cut(s)	64, 233
ScaI	AGTACT	1 cut(s)	315
SchI	GAGTC	4 cut(s)	61, 302, 592, 641
ScrFI	CCNGG	3 cut(s)	62, 450, 491
SetI	ASST	9 cut(s)	39, 132, 139, 164, 197, 309, 385, 421, 511
SfaNI	GCATC	1 cut(s)	470
SfcI	CTRYAG	1 cut(s)	768
SfuI	TTCGAA	2 cut(s)	261, 544
SinI	GGWCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	3 cut(s)	577, 663, 699
SmlI	CTYRAG	2 cut(s)	640, 814
SmoI	CTYRAG	2 cut(s)	640, 814
SphI	GCATGC	1 cut(s)	360
SsiI	CCGC	2 cut(s)	20, 43
SspMI	CTAG	1 cut(s)	504
StyD4I	CCNGG	3 cut(s)	60, 448, 489
TaaI	ACNGT	2 cut(s)	335, 692
TaqI	TCGA	3 cut(s)	261, 520, 544
TatI	WGTACW	2 cut(s)	313, 524
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	2 cut(s)	121, 783
Tru1I	TTAA	5 cut(s)	126, 183, 635, 641, 873
Tru9I	TTAA	5 cut(s)	126, 183, 635, 641, 873
TscAI	CASTG	2 cut(s)	402, 695
TseI	GCWGC	2 cut(s)	437, 458
TspDTI	ATGAA	2 cut(s)	675, 781
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	2 cut(s)	402, 695
Van91I	CCANNNNNTGG	1 cut(s)	335
Vha464I	CTTAAG	1 cut(s)	640
VpaK11BI	GGWCC	1 cut(s)	64
VspI	ATTAAT	1 cut(s)	873
XapI	RAATTY	6 cut(s)	99, 109, 386, 423, 516, 718
XbaI	TCTAGA	1 cut(s)	503
XceI	RCATGY	2 cut(s)	360, 404
XspI	CTAG	1 cut(s)	504
ZrmI	AGTACT	1 cut(s)	315
Zsp2I	ATGCAT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.