Prupe.7G021600_v2.0.a1

mRNA transport

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
3289106 .. 3295922
6817 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G021600.2

Sequence Viewer

Length: 1341 bp
ATGCCTTCCTTTCCTCATCCTGGTTCTGTCTCCATATGCGAAATCAATCGCGACCTCATCACTGCTGAGAGCCTCTCGGATGATGTAGCCAAGGACACTTATGGAAAGATTCTTGGAATGGTATTCAGTCCGGTTCCGTTTCAGTCGGATCAGCTGGCGCGGCCACCGAGCCCCGAGCAGGACGACCAACAAGTTGCAACAACAGCTCCAACAAAGGGACTTCTACAAACTTTGCAGGGGATCCTCAACCGCTCTCTCACACCTCTCTTCCATCCTAATCATGTAAACTTGTTACCAGAAGTTGATCTTCAAGGAGTCAGCTGGCACCAACATAAACATATTATAGCATTTATATCTGGCCCAAATCAAGTTATAGTTCGTGATTTTGAGGATTCAGAGGGGAAGGAGCCGTGCATTTTGGCTAATGAGTCCCAGAGAGAGGTCAAGGTACTTGAGTGGAGGCCAAATGGTGGAAGACAACTTTCCGTAGCATGCAATGGTGGAATTTGCATTTGGGCTGCTTCTTTCCCGGGAAGTGCAGCCTCTGTCAGATCTGGTGCTTCTTCGTTCTTGGGAACTCTCTCTAGAGGTTCTGGAGTCCGATATACTTTGGTGGATTTTCTTCGAAGTCATAATGGGGAACAGATTAGTGCACTGTCATGGAGTCCCGATGGAAGATATTTGGCATCAGGCTCTTATGAGAGCTCGTCATTTACCATATGGGATGTTGCTCAAGGGCTTGGGACACCCATTAGACGAGGGCTAGGTGGCATATCAATGCTGAAGTGGTCGCCAACTGGGGATTACTTTTTCTCAGCAAAATTTGATGGAACATTTTATCTCTGGGAGACAAACACATGGACATCTGAACCATGGTCTTCAACTAGTGGCTTCGTCAAGGGAGCATCATGGGATCCTGATGGGCATATGATACTTCTCGCTTTCTCTAAATCTTCAACATTGGGTTCCATTCACTTCGCTTCAAAGCCTCCATCACTTGATGCACACTTATTACCTGTTGAGCTACCAGAGATTATGTCCTTAACAAACAGTCAGACCACTGAGAAGATAGCTTGGGATGCTTCAGGAGAGCGTTTGGCTGTATCTTTTAAAGATGGTGATGAGTTATACAGAGGTCTTATTGCCATTTATGATGTTAGAAGGACTCCTCTAATATCTGCATCTTTGATTGGGTTTATTAGAGGACCTGGGGACAATCCAAAGCCGTTGGCATTTTCATTTCATGACAAGTTTAAACAGGGACCCTTGCTTTTTGTGTGCTGGAGTAGTGGATTTTGCTGTACCTACCCTCTCATATTTCGTTCCCATGTTCTTCCCTAG

Protein Analysis

447

Amino Acids

48.8

Weight (kDa)

5.95

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 324
AccB7I CCANNNNNTGG 1 cut(s) 470
AccBSI CCGCTC 1 cut(s) 252
AccII CGCG 2 cut(s) 51, 160
AciI CCGC 2 cut(s) 160, 250
AclWI GGATC 5 cut(s) 156, 235, 248, 908, 921
AcoI YGGCCR 1 cut(s) 161
AcsI RAATTY 2 cut(s) 504, 821
AcuI CTGAAG 2 cut(s) 803, 1068
AfaI GTAC 2 cut(s) 450, 1303
AfiI CCNNNNNNNGG 5 cut(s) 20, 178, 215, 439, 470
AgsI TTSAA 4 cut(s) 311, 882, 957, 984
AhlI ACTAGT 1 cut(s) 884
AjnI CCWGG 2 cut(s) 19, 1207
AjuI GAANNNNNNNTTGG 2 cut(s) 496, 528
AluBI AGCT 6 cut(s) 154, 206, 321, 705, 1024, 1073
AluI AGCT 6 cut(s) 154, 206, 321, 705, 1024, 1073
Alw21I GWGCWC 2 cut(s) 655, 707
Alw26I GTCTC 2 cut(s) 34, 842
Alw44I GTGCAC 1 cut(s) 651
AlwI GGATC 5 cut(s) 156, 235, 248, 908, 921
AlwNI CAGNNNCTG 1 cut(s) 545
Ama87I CYCGRG 2 cut(s) 173, 529
AoxI GGCC 3 cut(s) 161, 358, 461
ApaLI GTGCAC 1 cut(s) 651
ApeKI GCWGC 2 cut(s) 518, 539
ApoI RAATTY 2 cut(s) 504, 821
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 3 cut(s) 359, 1205, 1262
AsuC2I CCSGG 2 cut(s) 530, 531
AsuHPI GGTGA 1 cut(s) 1130
AsuII TTCGAA 1 cut(s) 625
AvaI CYCGRG 2 cut(s) 173, 529
AvaII GGWCC 2 cut(s) 1205, 1262
BaeGI GKGCMC 1 cut(s) 655
BaeI ACNNNNGTAYC 2 cut(s) 440, 473
BamHI GGATCC 2 cut(s) 240, 913
BanI GGYRCC 1 cut(s) 324
BanII GRGCYC 2 cut(s) 173, 707
BbsI GAAGAC 2 cut(s) 481, 870
Bbv12I GWGCWC 2 cut(s) 655, 707
BbvI GCAGC 2 cut(s) 505, 551
BccI CCATC 6 cut(s) 279, 665, 821, 914, 1000, 1109
BceAI ACGGC 2 cut(s) 394, 1210
BciT130I CCWGG 2 cut(s) 21, 1209
BcnI CCSGG 2 cut(s) 530, 531
BcoDI GTCTC 2 cut(s) 34, 842
BcuI ACTAGT 1 cut(s) 884
BfaI CTAG 4 cut(s) 585, 764, 885, 1339
BglII AGATCT 1 cut(s) 551
BisI GCNGC 3 cut(s) 161, 519, 540
BlsI GCNGC 3 cut(s) 162, 520, 541
Bme1390I CCNGG 4 cut(s) 21, 530, 531, 1209
Bme18I GGWCC 2 cut(s) 1205, 1262
BmeT110I CYCGRG 2 cut(s) 173, 529
BmgT120I GGNCC 3 cut(s) 359, 1205, 1262
BmiI GGNNCC 8 cut(s) 135, 242, 326, 408, 915, 967, 1263, 1264
BmrFI CCNGG 4 cut(s) 21, 530, 531, 1209
BmrI ACTGGG 1 cut(s) 807
BmsI GCATC 5 cut(s) 695, 914, 991, 1069, 1190
BmuI ACTGGG 1 cut(s) 807
BpiI GAAGAC 2 cut(s) 481, 870
BplI GAGNNNNNCTC 2 cut(s) 59, 91
BpmI CTGGAG 2 cut(s) 615, 1303
Bpu14I TTCGAA 1 cut(s) 625
BpuEI CTTGAG 2 cut(s) 473, 717
BpuMI CCSGG 2 cut(s) 530, 531
BsaJI CCNNGG 4 cut(s) 90, 529, 872, 1208
BsaWI WCCGGW 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bsc4I CCNNNNNNNGG 5 cut(s) 20, 178, 215, 439, 470
Bse1I ACTGG 1 cut(s) 802
Bse3DI GCAATG 1 cut(s) 502
BseBI CCWGG 2 cut(s) 21, 1209
BseDI CCNNGG 4 cut(s) 90, 529, 872, 1208
BseGI GGATG 5 cut(s) 16, 85, 271, 730, 1084
BseLI CCNNNNNNNGG 5 cut(s) 20, 178, 215, 439, 470
BseMI GCAATG 1 cut(s) 502
BseMII CTCAG 3 cut(s) 57, 828, 1053
BseNI ACTGG 1 cut(s) 802
BseRI GAGGAG 1 cut(s) 1158
BseSI GKGCMC 1 cut(s) 655
BseXI GCAGC 2 cut(s) 505, 551
BsgI GTGCAG 1 cut(s) 558
Bsh1236I CGCG 2 cut(s) 51, 160
BshFI GGCC 3 cut(s) 163, 360, 463
BshNI GGYRCC 1 cut(s) 324
BsiHKAI GWGCWC 2 cut(s) 655, 707
BsiHKCI CYCGRG 2 cut(s) 173, 529
BsiSI CCGG 2 cut(s) 131, 530
BslFI GGGAC 6 cut(s) 231, 415, 651, 757, 1226, 1275
BslI CCNNNNNNNGG 5 cut(s) 20, 178, 215, 439, 470
BsmAI GTCTC 2 cut(s) 34, 842
BsmFI GGGAC 6 cut(s) 231, 415, 651, 757, 1226, 1275
BsnI GGCC 3 cut(s) 163, 360, 463
BsoBI CYCGRG 2 cut(s) 173, 529
Bsp119I TTCGAA 1 cut(s) 625
Bsp1286I GDGCHC 3 cut(s) 173, 655, 707
Bsp143I GATC 5 cut(s) 148, 240, 304, 551, 913
Bsp19I CCATGG 1 cut(s) 872
Bsp68I TCGCGA 1 cut(s) 51
BspACI CCGC 2 cut(s) 160, 250
BspANI GGCC 3 cut(s) 163, 360, 463
BspCNI CTCAG 3 cut(s) 58, 827, 1054
BspFNI CGCG 2 cut(s) 51, 160
BspHI TCATGA 1 cut(s) 1243
BspLI GGNNCC 8 cut(s) 135, 242, 326, 408, 915, 967, 1263, 1264
BspPI GGATC 5 cut(s) 156, 235, 248, 908, 921
BspT104I TTCGAA 1 cut(s) 625
BspT107I GGYRCC 1 cut(s) 324
BsrBI CCGCTC 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 502
BsrI ACTGG 1 cut(s) 802
BssECI CCNNGG 4 cut(s) 90, 529, 872, 1208
BssMI GATC 5 cut(s) 148, 240, 304, 551, 913
BssT1I CCWWGG 2 cut(s) 90, 872
Bst2UI CCWGG 2 cut(s) 21, 1209
Bst4CI ACNGT 2 cut(s) 657, 1052
Bst6I CTCTTC 1 cut(s) 272
BstBI TTCGAA 1 cut(s) 625
BstC8I GCNNGC 3 cut(s) 156, 323, 493
BstDEI CTNAG 3 cut(s) 66, 814, 1062
BstDSI CCRYGG 1 cut(s) 872
BstF5I GGATG 5 cut(s) 16, 85, 271, 730, 1084
BstFNI CGCG 2 cut(s) 51, 160
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 5 cut(s) 151, 243, 307, 554, 916
BstMAI GTCTC 2 cut(s) 34, 842
BstMBI GATC 5 cut(s) 148, 240, 304, 551, 913
BstMWI GCNNNNNNNGC 3 cut(s) 160, 203, 1079
BstNI CCWGG 2 cut(s) 21, 1209
BstNSI RCATGY 1 cut(s) 495
BstSCI CCNGG 4 cut(s) 19, 528, 529, 1207
BstSLI GKGCMC 1 cut(s) 655
BstUI CGCG 2 cut(s) 51, 160
BstV1I GCAGC 2 cut(s) 505, 551
BstV2I GAAGAC 2 cut(s) 481, 870
BstX2I RGATCY 3 cut(s) 240, 551, 913
BstYI RGATCY 3 cut(s) 240, 551, 913
BsuRI GGCC 3 cut(s) 163, 360, 463
BtgI CCRYGG 1 cut(s) 872
BtsCI GGATG 5 cut(s) 16, 85, 271, 730, 1084
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 3 cut(s) 60, 653, 1059
BtuMI TCGCGA 1 cut(s) 51
Cac8I GCNNGC 3 cut(s) 156, 323, 493
CaiI CAGNNNCTG 1 cut(s) 545
CciI TCATGA 1 cut(s) 1243
CfoI GCGC 1 cut(s) 160
Cfr13I GGNCC 3 cut(s) 359, 1205, 1262
Cfr9I CCCGGG 1 cut(s) 529
Csp6I GTAC 2 cut(s) 449, 1302
CviAII CATG 8 cut(s) 281, 492, 660, 858, 873, 909, 1244, 1328
CviQI GTAC 2 cut(s) 449, 1302
DdeI CTNAG 3 cut(s) 66, 814, 1062
DpnI GATC 5 cut(s) 150, 242, 306, 553, 915
DpnII GATC 5 cut(s) 148, 240, 304, 551, 913
DraI TTTAAA 2 cut(s) 1111, 1255
EaeI YGGCCR 1 cut(s) 161
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Ecl136II GAGCTC 1 cut(s) 705
Eco130I CCWWGG 2 cut(s) 90, 872
Eco24I GRGCYC 2 cut(s) 173, 707
Eco47I GGWCC 2 cut(s) 1205, 1262
Eco53kI GAGCTC 1 cut(s) 705
Eco57I CTGAAG 2 cut(s) 803, 1068
Eco88I CYCGRG 2 cut(s) 173, 529
EcoICRI GAGCTC 1 cut(s) 705
EcoO109I RGGNCCY 2 cut(s) 1205, 1262
EcoRII CCWGG 2 cut(s) 19, 1207
EcoT14I CCWWGG 2 cut(s) 90, 872
EcoT38I GRGCYC 2 cut(s) 173, 707
ErhI CCWWGG 2 cut(s) 90, 872
FaeI CATG 8 cut(s) 284, 495, 663, 861, 876, 912, 1247, 1331
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 6 cut(s) 231, 415, 651, 757, 1226, 1275
FatI CATG 8 cut(s) 280, 491, 659, 857, 872, 908, 1243, 1327
FauNDI CATATG 3 cut(s) 35, 719, 927
Fnu4HI GCNGC 3 cut(s) 161, 519, 540
FokI GGATG 5 cut(s) 3, 92, 258, 737, 1091
FriOI GRGCYC 2 cut(s) 173, 707
Fsp4HI GCNGC 3 cut(s) 161, 519, 540
FspBI CTAG 4 cut(s) 585, 764, 885, 1339
GlaI GCGC 1 cut(s) 159
GluI GCNGC 3 cut(s) 161, 519, 540
GsuI CTGGAG 2 cut(s) 615, 1303
HaeIII GGCC 3 cut(s) 163, 360, 463
HapII CCGG 2 cut(s) 131, 530
HhaI GCGC 1 cut(s) 160
Hin1II CATG 8 cut(s) 284, 495, 663, 861, 876, 912, 1247, 1331
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HinfI GANTC 7 cut(s) 109, 315, 392, 428, 597, 664, 1165
HpaII CCGG 2 cut(s) 131, 530
HphI GGTGA 1 cut(s) 1130
Hpy166II GTNNAC 2 cut(s) 286, 653
Hpy188I TCNGA 7 cut(s) 79, 148, 397, 551, 602, 868, 1056
Hpy188III TCNNGA 8 cut(s) 50, 380, 585, 594, 668, 917, 1086, 1244
Hpy8I GTNNAC 2 cut(s) 286, 653
HpyAV CCTTC 3 cut(s) 15, 397, 1155
HpyCH4III ACNGT 2 cut(s) 657, 1052
HpyCH4V TGCA 9 cut(s) 197, 235, 414, 495, 510, 539, 653, 1004, 1181
HpyF10VI GCNNNNNNNGC 3 cut(s) 160, 203, 1079
HpyF3I CTNAG 3 cut(s) 66, 814, 1062
Hsp92II CATG 8 cut(s) 284, 495, 663, 861, 876, 912, 1247, 1331
HspAI GCGC 1 cut(s) 158
KflI GGGWCCC 1 cut(s) 1262
Kzo9I GATC 5 cut(s) 148, 240, 304, 551, 913
LmnI GCTCC 3 cut(s) 211, 406, 902
Lsp1109I GCAGC 2 cut(s) 505, 551
LweI GCATC 5 cut(s) 695, 914, 991, 1069, 1190
MaeI CTAG 4 cut(s) 585, 764, 885, 1339
MaeIII GTNAC 1 cut(s) 291
MalI GATC 5 cut(s) 150, 242, 306, 553, 915
MbiI CCGCTC 1 cut(s) 252
MboI GATC 5 cut(s) 148, 240, 304, 551, 913
MflI RGATCY 3 cut(s) 240, 551, 913
MhlI GDGCHC 3 cut(s) 173, 655, 707
MluCI AATT 2 cut(s) 504, 821
MlyI GAGTC 5 cut(s) 324, 437, 606, 673, 1159
MmeI TCCRAC 2 cut(s) 126, 233
MseI TTAA 3 cut(s) 1043, 1110, 1254
MslI CAYNNNNRTG 2 cut(s) 658, 776
MspA1I CMGCKG 2 cut(s) 154, 321
MspI CCGG 2 cut(s) 131, 530
MspR9I CCNGG 4 cut(s) 21, 530, 531, 1209
MssI GTTTAAAC 1 cut(s) 1255
MvaI CCWGG 2 cut(s) 21, 1209
MvnI CGCG 2 cut(s) 51, 160
MwoI GCNNNNNNNGC 3 cut(s) 160, 203, 1079
NciI CCSGG 2 cut(s) 530, 531
NcoI CCATGG 1 cut(s) 872
NdeI CATATG 3 cut(s) 35, 719, 927
NdeII GATC 5 cut(s) 148, 240, 304, 551, 913
NlaIII CATG 8 cut(s) 284, 495, 663, 861, 876, 912, 1247, 1331
NlaIV GGNNCC 8 cut(s) 135, 242, 326, 408, 915, 967, 1263, 1264
NruI TCGCGA 1 cut(s) 51
NspI RCATGY 1 cut(s) 495
NspV TTCGAA 1 cut(s) 625
PaeI GCATGC 1 cut(s) 495
PagI TCATGA 1 cut(s) 1243
PfeI GAWTC 2 cut(s) 109, 392
PflMI CCANNNNNTGG 1 cut(s) 470
PkrI GCNGC 3 cut(s) 162, 520, 541
PleI GAGTC 5 cut(s) 323, 436, 605, 672, 1159
PmeI GTTTAAAC 1 cut(s) 1255
PpsI GAGTC 5 cut(s) 323, 436, 605, 672, 1159
PpuMI RGGWCCY 2 cut(s) 1205, 1262
Psp124BI GAGCTC 1 cut(s) 707
Psp5II RGGWCCY 2 cut(s) 1205, 1262
Psp6I CCWGG 2 cut(s) 19, 1207
PspGI CCWGG 2 cut(s) 19, 1207
PspN4I GGNNCC 8 cut(s) 135, 242, 326, 408, 915, 967, 1263, 1264
PspPI GGNCC 3 cut(s) 359, 1205, 1262
PspPPI RGGWCCY 2 cut(s) 1205, 1262
PstNI CAGNNNCTG 1 cut(s) 545
PsuI RGATCY 3 cut(s) 240, 551, 913
PvuII CAGCTG 2 cut(s) 154, 321
RruI TCGCGA 1 cut(s) 51
RsaI GTAC 2 cut(s) 450, 1303
RsaNI GTAC 2 cut(s) 449, 1302
RseI CAYNNNNRTG 2 cut(s) 658, 776
SacI GAGCTC 1 cut(s) 707
SaqAI TTAA 3 cut(s) 1043, 1110, 1254
SatI GCNGC 3 cut(s) 161, 519, 540
Sau3AI GATC 5 cut(s) 148, 240, 304, 551, 913
Sau96I GGNCC 3 cut(s) 359, 1205, 1262
SchI GAGTC 5 cut(s) 324, 437, 606, 673, 1159
ScrFI CCNGG 4 cut(s) 21, 530, 531, 1209
SduI GDGCHC 3 cut(s) 173, 655, 707
SfaNI GCATC 5 cut(s) 695, 914, 991, 1069, 1190
SfuI TTCGAA 1 cut(s) 625
SinI GGWCC 2 cut(s) 1205, 1262
SmaI CCCGGG 1 cut(s) 531
SmiMI CAYNNNNRTG 2 cut(s) 658, 776
SmlI CTYRAG 2 cut(s) 452, 732
SmoI CTYRAG 2 cut(s) 452, 732
SpeI ACTAGT 1 cut(s) 884
SphI GCATGC 1 cut(s) 495
Sse9I AATT 2 cut(s) 504, 821
SsiI CCGC 2 cut(s) 160, 250
SspMI CTAG 4 cut(s) 585, 764, 885, 1339
SstI GAGCTC 1 cut(s) 707
StyD4I CCNGG 4 cut(s) 19, 528, 529, 1207
StyI CCWWGG 2 cut(s) 90, 872
TaaI ACNGT 2 cut(s) 657, 1052
TaqI TCGA 1 cut(s) 625
TasI AATT 2 cut(s) 504, 821
TauI GCSGC 1 cut(s) 163
TfiI GAWTC 2 cut(s) 109, 392
Tru1I TTAA 3 cut(s) 1043, 1110, 1254
Tru9I TTAA 3 cut(s) 1043, 1110, 1254
TscAI CASTG 3 cut(s) 67, 660, 1066
TseI GCWGC 2 cut(s) 518, 539
TspDTI ATGAA 2 cut(s) 1227, 1232
TspGWI ACGGA 2 cut(s) 126, 475
TspMI CCCGGG 1 cut(s) 529
TspRI CASTG 3 cut(s) 67, 660, 1066
Van91I CCANNNNNTGG 1 cut(s) 470
VneI GTGCAC 1 cut(s) 651
VpaK11BI GGWCC 2 cut(s) 1205, 1262
XapI RAATTY 2 cut(s) 504, 821
XbaI TCTAGA 1 cut(s) 584
XceI RCATGY 1 cut(s) 495
XmaI CCCGGG 1 cut(s) 529
XspI CTAG 4 cut(s) 585, 764, 885, 1339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.