Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005614

Physical Location & Seq

Genomic Coordinates Reverse (-)

11030771 .. 11031940

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g09160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGTATTCAGCCCACTTCCGTTTCAATCGGATCAGCTGGTGCAGCCCCCGAGTCCCGACTATGATGCCGAGCAGGTTGTAACCGCATCTCCAACAAAGGGATTTCTAAAAAATTTGCAGGGGATTATTAACCTCACTCCTCTCCTCCGCCCTAATCATGAGCCATGCATTTTGGCCAATGAATCGCAGAGAGAGGTCAAAGTACTTGAGTGGAGGCCAAACGGTGGGAGACAACTTGCTGTAGCATGCAAGCAAGTACCTCAATTTTGCTGCTCAAGATCAATATCTACATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003008 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006810 GO:0006913 GO:0007610 GO:0007611 GO:0007612 GO:0008150 GO:0009566 GO:0012505 GO:0015630 GO:0016020 GO:0019953 GO:0022414 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046907 GO:0050877 GO:0050890 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

99

Amino Acids

10.92

Weight (kDa)

7.67

Isoelectric Point (pI)

69.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56900
fragaria_vesca	FvH4_7g04320 FvH4_7g04320 FvH4_7g04320 FvH4_7g04320
malus_domestica	MD12G1112000.v1.1 MD14G1101000.v1.1 MD14G1101100.v1.1
prunus_persica	Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1
pyrus_communis	pycom12g09160 pycom14g08800
rosa_chinensis	RchiOBHm_Chr1g0329271 RchiOBHm_Chr1g0329281
rosa_laevigata	RLG00000029905
rosa_multiflora	Rmu_co8376675.1_g000001 Rmu_sc0000203.1_g000006 Rmu_sc0010272.1_g000001
rosa_rugosa	Rorug01G0077700
rosa_samantha	Rh1AG096600 Rh1BG077300 Rh1CG093300 Rh1DG099600 Rh1DG100000
rosa_wichuraiana	Rw1G007480 Rw1G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	64
AccB7I	CCANNNNNTGG	1 cut(s)	224
AciI	CCGC	2 cut(s)	84, 148
AclWI	GGATC	1 cut(s)	39
AcoI	YGGCCR	1 cut(s)	174
AcsI	RAATTY	1 cut(s)	112
AfaI	GTAC	2 cut(s)	204, 258
AfiI	CCNNNNNNNGG	2 cut(s)	98, 224
AgsI	TTSAA	1 cut(s)	26
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	1 cut(s)	39
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	2 cut(s)	174, 215
ApeKI	GCWGC	2 cut(s)	43, 270
ApoI	RAATTY	1 cut(s)	112
AvaI	CYCGRG	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	176
BbvI	GCAGC	2 cut(s)	55, 257
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BcoDI	GTCTC	1 cut(s)	223
BfmI	CTRYAG	1 cut(s)	240
BfuAI	ACCTGC	1 cut(s)	64
BisI	GCNGC	2 cut(s)	44, 271
BlsI	GCNGC	2 cut(s)	45, 272
BmcAI	AGTACT	1 cut(s)	204
BmeT110I	CYCGRG	1 cut(s)	49
BmsI	GCATC	2 cut(s)	55, 95
BpuEI	CTTGAG	2 cut(s)	227, 259
BsaBI	GATNNNNATC	1 cut(s)	283
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 224
Bse8I	GATNNNNATC	1 cut(s)	283
BseJI	GATNNNNATC	1 cut(s)	283
BseLI	CCNNNNNNNGG	2 cut(s)	98, 224
BseRI	GAGGAG	2 cut(s)	129, 134
BseXI	GCAGC	2 cut(s)	55, 257
BsgI	GTGCAG	1 cut(s)	62
BshFI	GGCC	2 cut(s)	176, 217
BsiHKCI	CYCGRG	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	98, 224
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	2 cut(s)	176, 217
BsoBI	CYCGRG	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	31, 278
BspACI	CCGC	2 cut(s)	84, 148
BspANI	GGCC	2 cut(s)	176, 217
BspHI	TCATGA	1 cut(s)	157
BspMI	ACCTGC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	39
BssMI	GATC	2 cut(s)	31, 278
Bst4CI	ACNGT	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	247, 251
BstKTI	GATC	2 cut(s)	34, 281
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	2 cut(s)	31, 278
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNSI	RCATGY	1 cut(s)	249
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	2 cut(s)	55, 257
BsuRI	GGCC	2 cut(s)	176, 217
BveI	ACCTGC	1 cut(s)	64
Cac8I	GCNNGC	2 cut(s)	247, 251
CciI	TCATGA	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	203, 257
CviAII	CATG	3 cut(s)	158, 165, 246
CviJI	RGCY	6 cut(s)	12, 37, 46, 163, 176, 217
CviKI_1	RGCY	6 cut(s)	12, 37, 46, 163, 176, 217
CviQI	GTAC	2 cut(s)	203, 257
DpnI	GATC	2 cut(s)	33, 280
DpnII	GATC	2 cut(s)	31, 278
EaeI	YGGCCR	1 cut(s)	174
EciI	GGCGGA	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	49
EcoT22I	ATGCAT	1 cut(s)	170
FaeI	CATG	3 cut(s)	161, 168, 249
FaiI	YATR	4 cut(s)	63, 159, 166, 247
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	3 cut(s)	157, 164, 245
Fnu4HI	GCNGC	2 cut(s)	44, 271
Fsp4HI	GCNGC	2 cut(s)	44, 271
GluI	GCNGC	2 cut(s)	44, 271
HaeIII	GGCC	2 cut(s)	176, 217
Hin1II	CATG	3 cut(s)	161, 168, 249
HinfI	GANTC	2 cut(s)	52, 182
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	3 cut(s)	56, 158, 276
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4V	TGCA	4 cut(s)	43, 118, 168, 249
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
Hsp92II	CATG	3 cut(s)	161, 168, 249
Kzo9I	GATC	2 cut(s)	31, 278
LpnPI	CCDG	3 cut(s)	23, 59, 104
Lsp1109I	GCAGC	2 cut(s)	55, 257
LweI	GCATC	2 cut(s)	55, 95
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	2 cut(s)	33, 280
MboI	GATC	2 cut(s)	31, 278
MlsI	TGGCCA	1 cut(s)	176
MluCI	AATT	2 cut(s)	112, 263
MluNI	TGGCCA	1 cut(s)	176
MlyI	GAGTC	1 cut(s)	61
MmeI	TCCRAC	1 cut(s)	116
MnlI	CCTC	6 cut(s)	143, 150, 155, 187, 207, 270
Mox20I	TGGCCA	1 cut(s)	176
Mph1103I	ATGCAT	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	176
MseI	TTAA	2 cut(s)	129, 295
Msp20I	TGGCCA	1 cut(s)	176
MspA1I	CMGCKG	1 cut(s)	37
MwoI	GCNNNNNNNGC	1 cut(s)	43
NdeII	GATC	2 cut(s)	31, 278
NlaIII	CATG	3 cut(s)	161, 168, 249
NmeAIII	GCCGAG	1 cut(s)	94
NsiI	ATGCAT	1 cut(s)	170
NspI	RCATGY	1 cut(s)	249
PaeI	GCATGC	1 cut(s)	249
PagI	TCATGA	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	224
PkrI	GCNGC	2 cut(s)	45, 272
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
PvuII	CAGCTG	1 cut(s)	37
RsaI	GTAC	2 cut(s)	204, 258
RsaNI	GTAC	2 cut(s)	203, 257
SaqAI	TTAA	2 cut(s)	129, 295
SatI	GCNGC	2 cut(s)	44, 271
Sau3AI	GATC	2 cut(s)	31, 278
ScaI	AGTACT	1 cut(s)	204
SchI	GAGTC	1 cut(s)	61
SetI	ASST	5 cut(s)	39, 78, 135, 198, 262
SfaNI	GCATC	2 cut(s)	55, 95
SfcI	CTRYAG	1 cut(s)	240
SmlI	CTYRAG	2 cut(s)	206, 274
SmoI	CTYRAG	2 cut(s)	206, 274
SphI	GCATGC	1 cut(s)	249
Sse9I	AATT	2 cut(s)	112, 263
SsiI	CCGC	2 cut(s)	84, 148
TaaI	ACNGT	1 cut(s)	224
TasI	AATT	2 cut(s)	112, 263
TatI	WGTACW	1 cut(s)	202
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	129, 295
Tru9I	TTAA	2 cut(s)	129, 295
TseI	GCWGC	2 cut(s)	43, 270
TspDTI	ATGAA	1 cut(s)	195
TspGWI	ACGGA	1 cut(s)	9
Van91I	CCANNNNNTGG	1 cut(s)	224
XapI	RAATTY	1 cut(s)	112
XceI	RCATGY	1 cut(s)	249
ZrmI	AGTACT	1 cut(s)	204
Zsp2I	ATGCAT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.