Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0005614

Physical Location & Seq

Genomic Coordinates Forward (+)

15587945 .. 15593105

Gene Structure 5161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1101000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGCCTTCCTTTCCTCATCCCGGTTCTGTCACCATTTGCGAAATCAATCGCGACCTCATCACTGCTGAGAGCCTCTCGGACGATGTAGCCAAGGACACTTATGGAAATATTATTGGAATGGTATTCAGCCCAGTTCTGCTTCAATCGGATCAGCTGGTGCGGCCACCGAGTCCTGACCAGGACCCCCAGCAAGTTGTAACAACTCCAACCAAGGGAATTCTACAAAATTTGCAGGAGATTCTTAACCTCACACCTCTCTTCCGTCCTAATTATGTAAGCTTATTACCAGAAGTTGATCTTCAAGGAGTGAGCTGGCACCAACATAAACTTGCTGTAGCGGTTATATCTGGCCCAAATCAAGTTACAGTTTGGGATTTCGAGGATTTCGAAGGGAAGGAGCTATGCATTTTGGCCAATGAGTCCCAAAGAGAGGTCAAAATACTTGAGTGGAGGCCAAACGGTGGGAGACAACTTGCCGTAGCATGCAAGCACGCTATAAATTGTAAAGCTGAATTTCTCTCACTGTATGTGCTTGATTTCAGAGGTGGAATTTGCATTTGGGCTGCTTCTTTCCCAGGAACTGCAGCATCTATCAGATCTGGTTCTTCTTCCTTCCTGGGAGCTCTCTCTAGAGGTTCTGGAATTCGATATACTTTGGTGGATTTTCTTCGAAGTCATAACGAGGAACAGATTAGTGCATTGTCATGGAGTCCTGATGGAAGATATCCAAACAATCTCTATTCTGCTCATCATTTACCATATGGGATGTTTCTCAAGATACTCAGAAAATTGGGCAAAAACAGTGAAAAGGCAAAGACCTCATTTGATACTGCTTTTAACAGCTGGCATGTGCTTTTCTTTTACTTTTCTTTTAAAAAAGAAATATATTATTTTGGTGGTTTGCCTAGGTTCTTTTTCTTGTGCTTTTGCTGTGTTTTTGGTACTTTTACAAAACATTACAGGAAGTACTTTCTAAAAGCTGCTTGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003008 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006810 GO:0006913 GO:0007610 GO:0007611 GO:0007612 GO:0008150 GO:0009566 GO:0012505 GO:0015630 GO:0016020 GO:0019953 GO:0022414 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046907 GO:0050877 GO:0050890 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

331

Amino Acids

37.21

Weight (kDa)

8.31

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Aladin	PF25460	100 - 166	9.8e-08	Aladin seven-bladed propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56900
fragaria_vesca	FvH4_7g04320 FvH4_7g04320 FvH4_7g04320 FvH4_7g04320
malus_domestica	MD12G1112000.v1.1 MD14G1101000.v1.1 MD14G1101100.v1.1
prunus_persica	Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1
pyrus_communis	pycom12g09160 pycom14g08800
rosa_chinensis	RchiOBHm_Chr1g0329271 RchiOBHm_Chr1g0329281
rosa_laevigata	RLG00000029905
rosa_multiflora	Rmu_co8376675.1_g000001 Rmu_sc0000203.1_g000006 Rmu_sc0010272.1_g000001
rosa_rugosa	Rorug01G0077700
rosa_samantha	Rh1AG096600 Rh1BG077300 Rh1CG093300 Rh1DG099600 Rh1DG100000
rosa_wichuraiana	Rw1G007480 Rw1G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	315
AccB7I	CCANNNNNTGG	1 cut(s)	461
AccII	CGCG	1 cut(s)	51
AciI	CCGC	2 cut(s)	160, 338
AclWI	GGATC	1 cut(s)	156
AcoI	YGGCCR	2 cut(s)	161, 411
AcsI	RAATTY	5 cut(s)	216, 226, 512, 549, 642
AfaI	GTAC	3 cut(s)	943, 968, 988
AfiI	CCNNNNNNNGG	4 cut(s)	20, 212, 430, 461
AgsI	TTSAA	2 cut(s)	143, 302
AjnI	CCWGG	3 cut(s)	177, 574, 615
AjuI	GAANNNNNNNTTGG	2 cut(s)	541, 573
AluBI	AGCT	8 cut(s)	154, 279, 312, 400, 509, 623, 843, 980
AluI	AGCT	8 cut(s)	154, 279, 312, 400, 509, 623, 843, 980
Alw21I	GWGCWC	1 cut(s)	625
Alw26I	GTCTC	1 cut(s)	460
AlwI	GGATC	1 cut(s)	156
AlwNI	CAGNNNCTG	1 cut(s)	581
AoxI	GGCC	4 cut(s)	161, 349, 411, 452
ApeKI	GCWGC	3 cut(s)	563, 584, 980
ApoI	RAATTY	5 cut(s)	216, 226, 512, 549, 642
AspA2I	CCTAGG	1 cut(s)	905
AspS9I	GGNCC	2 cut(s)	181, 350
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	1 cut(s)	22
AsuII	TTCGAA	2 cut(s)	387, 670
AvaII	GGWCC	1 cut(s)	181
AvrII	CCTAGG	1 cut(s)	905
BalI	TGGCCA	1 cut(s)	413
BanI	GGYRCC	1 cut(s)	315
BanII	GRGCYC	1 cut(s)	625
Bbv12I	GWGCWC	1 cut(s)	625
BbvI	GCAGC	3 cut(s)	550, 596, 967
BccI	CCATC	1 cut(s)	710
BceAI	ACGGC	1 cut(s)	461
BciT130I	CCWGG	3 cut(s)	179, 576, 617
BcnI	CCSGG	1 cut(s)	21
BcoDI	GTCTC	1 cut(s)	460
BfaI	CTAG	2 cut(s)	630, 906
BfmI	CTRYAG	2 cut(s)	333, 582
BglII	AGATCT	1 cut(s)	596
BisI	GCNGC	4 cut(s)	161, 564, 585, 981
BlnI	CCTAGG	1 cut(s)	905
BlsI	GCNGC	4 cut(s)	162, 565, 586, 982
BmcAI	AGTACT	1 cut(s)	968
Bme1390I	CCNGG	4 cut(s)	21, 179, 576, 617
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	2 cut(s)	181, 350
BmiI	GGNNCC	2 cut(s)	183, 317
BmrFI	CCNGG	4 cut(s)	21, 179, 576, 617
BmrI	ACTGGG	1 cut(s)	125
BmsI	GCATC	1 cut(s)	596
BmuI	ACTGGG	1 cut(s)	125
BplI	GAGNNNNNCTC	2 cut(s)	59, 91
Bpu14I	TTCGAA	2 cut(s)	387, 670
BpuEI	CTTGAG	2 cut(s)	464, 758
BpuMI	CCSGG	1 cut(s)	21
BsaJI	CCNNGG	5 cut(s)	90, 210, 574, 616, 905
Bsc4I	CCNNNNNNNGG	4 cut(s)	20, 212, 430, 461
Bse1I	ACTGG	1 cut(s)	131
BseBI	CCWGG	3 cut(s)	179, 576, 617
BseDI	CCNNGG	5 cut(s)	90, 210, 574, 616, 905
BseGI	GGATG	2 cut(s)	16, 771
BseLI	CCNNNNNNNGG	4 cut(s)	20, 212, 430, 461
BseMII	CTCAG	2 cut(s)	57, 796
BseNI	ACTGG	1 cut(s)	131
BseXI	GCAGC	3 cut(s)	550, 596, 967
BseYI	CCCAGC	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	51
BshFI	GGCC	4 cut(s)	163, 351, 413, 454
BshNI	GGYRCC	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	625
BsiSI	CCGG	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	406
BslI	CCNNNNNNNGG	4 cut(s)	20, 212, 430, 461
BsmAI	GTCTC	1 cut(s)	460
BsmFI	GGGAC	1 cut(s)	406
BsnI	GGCC	4 cut(s)	163, 351, 413, 454
Bsp119I	TTCGAA	2 cut(s)	387, 670
Bsp1286I	GDGCHC	1 cut(s)	625
Bsp143I	GATC	3 cut(s)	148, 295, 596
Bsp68I	TCGCGA	1 cut(s)	51
BspACI	CCGC	2 cut(s)	160, 338
BspANI	GGCC	4 cut(s)	163, 351, 413, 454
BspCNI	CTCAG	2 cut(s)	58, 795
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	2 cut(s)	183, 317
BspMAI	CTGCAG	1 cut(s)	586
BspPI	GGATC	1 cut(s)	156
BspT104I	TTCGAA	2 cut(s)	387, 670
BspT107I	GGYRCC	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	5 cut(s)	90, 210, 574, 616, 905
BssMI	GATC	3 cut(s)	148, 295, 596
BssT1I	CCWWGG	3 cut(s)	90, 210, 905
Bst2UI	CCWGG	3 cut(s)	179, 576, 617
Bst4CI	ACNGT	4 cut(s)	367, 461, 525, 803
Bst6I	CTCTTC	1 cut(s)	263
BstBI	TTCGAA	2 cut(s)	387, 670
BstC8I	GCNNGC	5 cut(s)	314, 484, 488, 492, 845
BstDEI	CTNAG	2 cut(s)	66, 782
BstF5I	GGATG	2 cut(s)	16, 771
BstFNI	CGCG	1 cut(s)	51
BstKTI	GATC	3 cut(s)	151, 298, 599
BstMAI	GTCTC	1 cut(s)	460
BstMBI	GATC	3 cut(s)	148, 295, 596
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstNI	CCWGG	3 cut(s)	179, 576, 617
BstNSI	RCATGY	2 cut(s)	486, 851
BstSCI	CCNGG	4 cut(s)	19, 177, 574, 615
BstSFI	CTRYAG	2 cut(s)	333, 582
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	3 cut(s)	550, 596, 967
BstX2I	RGATCY	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	596
BsuRI	GGCC	4 cut(s)	163, 351, 413, 454
BtsCI	GGATG	2 cut(s)	16, 771
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	3 cut(s)	60, 521, 808
BtuMI	TCGCGA	1 cut(s)	51
Cac8I	GCNNGC	5 cut(s)	314, 484, 488, 492, 845
CaiI	CAGNNNCTG	1 cut(s)	581
Cfr13I	GGNCC	2 cut(s)	181, 350
Csp6I	GTAC	3 cut(s)	942, 967, 987
CviAII	CATG	3 cut(s)	483, 705, 848
CviQI	GTAC	3 cut(s)	942, 967, 987
DdeI	CTNAG	2 cut(s)	66, 782
DpnI	GATC	3 cut(s)	150, 297, 598
DpnII	GATC	3 cut(s)	148, 295, 596
DraI	TTTAAA	1 cut(s)	874
EaeI	YGGCCR	2 cut(s)	161, 411
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Ecl136II	GAGCTC	1 cut(s)	623
Eco130I	CCWWGG	3 cut(s)	90, 210, 905
Eco24I	GRGCYC	1 cut(s)	625
Eco32I	GATATC	1 cut(s)	725
Eco47I	GGWCC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	623
EcoICRI	GAGCTC	1 cut(s)	623
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRI	GAATTC	2 cut(s)	216, 642
EcoRII	CCWGG	3 cut(s)	177, 574, 615
EcoRV	GATATC	1 cut(s)	725
EcoT14I	CCWWGG	3 cut(s)	90, 210, 905
EcoT22I	ATGCAT	1 cut(s)	407
EcoT38I	GRGCYC	1 cut(s)	625
ErhI	CCWWGG	3 cut(s)	90, 210, 905
FaeI	CATG	3 cut(s)	486, 708, 851
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FaqI	GGGAC	1 cut(s)	406
FatI	CATG	3 cut(s)	482, 704, 847
FauNDI	CATATG	1 cut(s)	760
Fnu4HI	GCNGC	4 cut(s)	161, 564, 585, 981
FokI	GGATG	2 cut(s)	3, 778
FriOI	GRGCYC	1 cut(s)	625
Fsp4HI	GCNGC	4 cut(s)	161, 564, 585, 981
FspBI	CTAG	2 cut(s)	630, 906
GluI	GCNGC	4 cut(s)	161, 564, 585, 981
GsaI	CCCAGC	1 cut(s)	190
HaeIII	GGCC	4 cut(s)	163, 351, 413, 454
HapII	CCGG	1 cut(s)	21
Hin1II	CATG	3 cut(s)	486, 708, 851
HindIII	AAGCTT	1 cut(s)	277
HinfI	GANTC	4 cut(s)	169, 238, 419, 709
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	1 cut(s)	22
Hpy188I	TCNGA	5 cut(s)	79, 148, 542, 596, 785
Hpy188III	TCNNGA	6 cut(s)	50, 173, 630, 639, 713, 775
HpyAV	CCTTC	4 cut(s)	15, 383, 388, 622
HpyCH4III	ACNGT	4 cut(s)	367, 461, 525, 803
HpyCH4V	TGCA	6 cut(s)	232, 405, 486, 555, 584, 698
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	2 cut(s)	66, 782
Hsp92II	CATG	3 cut(s)	486, 708, 851
Kzo9I	GATC	3 cut(s)	148, 295, 596
LmnI	GCTCC	2 cut(s)	397, 620
Lsp1109I	GCAGC	3 cut(s)	550, 596, 967
LweI	GCATC	1 cut(s)	596
MaeI	CTAG	2 cut(s)	630, 906
MaeIII	GTNAC	3 cut(s)	28, 196, 361
MalI	GATC	3 cut(s)	150, 297, 598
MboI	GATC	3 cut(s)	148, 295, 596
MboII	GAAGA	6 cut(s)	250, 290, 597, 600, 659, 732
MflI	RGATCY	1 cut(s)	596
MhlI	GDGCHC	1 cut(s)	625
MlsI	TGGCCA	1 cut(s)	413
MluCI	AATT	8 cut(s)	216, 226, 268, 499, 512, 549, 642, 788
MluNI	TGGCCA	1 cut(s)	413
MlyI	GAGTC	3 cut(s)	178, 428, 718
MmeI	TCCRAC	1 cut(s)	230
Mox20I	TGGCCA	1 cut(s)	413
Mph1103I	ATGCAT	1 cut(s)	407
MscI	TGGCCA	1 cut(s)	413
MseI	TTAA	3 cut(s)	243, 837, 873
MslI	CAYNNNNRTG	1 cut(s)	703
Msp20I	TGGCCA	1 cut(s)	413
MspA1I	CMGCKG	2 cut(s)	154, 843
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	4 cut(s)	21, 179, 576, 617
MvaI	CCWGG	3 cut(s)	179, 576, 617
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	160
NciI	CCSGG	1 cut(s)	21
NdeI	CATATG	1 cut(s)	760
NdeII	GATC	3 cut(s)	148, 295, 596
NlaIII	CATG	3 cut(s)	486, 708, 851
NlaIV	GGNNCC	2 cut(s)	183, 317
NmuCI	GTSAC	1 cut(s)	28
NruI	TCGCGA	1 cut(s)	51
NsiI	ATGCAT	1 cut(s)	407
NspI	RCATGY	2 cut(s)	486, 851
NspV	TTCGAA	2 cut(s)	387, 670
PaeI	GCATGC	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	238
PflMI	CCANNNNNTGG	1 cut(s)	461
PkrI	GCNGC	4 cut(s)	162, 565, 586, 982
PleI	GAGTC	3 cut(s)	177, 427, 717
PpsI	GAGTC	3 cut(s)	177, 427, 717
PpuMI	RGGWCCY	1 cut(s)	181
Psp124BI	GAGCTC	1 cut(s)	625
Psp5II	RGGWCCY	1 cut(s)	181
Psp6I	CCWGG	3 cut(s)	177, 574, 615
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	3 cut(s)	177, 574, 615
PspN4I	GGNNCC	2 cut(s)	183, 317
PspPI	GGNCC	2 cut(s)	181, 350
PspPPI	RGGWCCY	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	586
PstNI	CAGNNNCTG	1 cut(s)	581
PsuI	RGATCY	1 cut(s)	596
PvuII	CAGCTG	2 cut(s)	154, 843
RruI	TCGCGA	1 cut(s)	51
RsaI	GTAC	3 cut(s)	943, 968, 988
RsaNI	GTAC	3 cut(s)	942, 967, 987
RseI	CAYNNNNRTG	1 cut(s)	703
SacI	GAGCTC	1 cut(s)	625
SaqAI	TTAA	3 cut(s)	243, 837, 873
SatI	GCNGC	4 cut(s)	161, 564, 585, 981
Sau3AI	GATC	3 cut(s)	148, 295, 596
Sau96I	GGNCC	2 cut(s)	181, 350
ScaI	AGTACT	1 cut(s)	968
SchI	GAGTC	3 cut(s)	178, 428, 718
ScrFI	CCNGG	4 cut(s)	21, 179, 576, 617
SduI	GDGCHC	1 cut(s)	625
SfaNI	GCATC	1 cut(s)	596
SfcI	CTRYAG	2 cut(s)	333, 582
SfuI	TTCGAA	2 cut(s)	387, 670
SinI	GGWCC	1 cut(s)	181
SmiMI	CAYNNNNRTG	1 cut(s)	703
SmlI	CTYRAG	2 cut(s)	443, 773
SmoI	CTYRAG	2 cut(s)	443, 773
SphI	GCATGC	1 cut(s)	486
Sse9I	AATT	8 cut(s)	216, 226, 268, 499, 512, 549, 642, 788
SsiI	CCGC	2 cut(s)	160, 338
SspI	AATATT	1 cut(s)	109
SspMI	CTAG	2 cut(s)	630, 906
SstI	GAGCTC	1 cut(s)	625
StyD4I	CCNGG	4 cut(s)	19, 177, 574, 615
StyI	CCWWGG	3 cut(s)	90, 210, 905
TaaI	ACNGT	4 cut(s)	367, 461, 525, 803
TaqI	TCGA	4 cut(s)	378, 387, 646, 670
TasI	AATT	8 cut(s)	216, 226, 268, 499, 512, 549, 642, 788
TatI	WGTACW	2 cut(s)	966, 986
TauI	GCSGC	1 cut(s)	163
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	3 cut(s)	243, 837, 873
Tru9I	TTAA	3 cut(s)	243, 837, 873
TscAI	CASTG	3 cut(s)	67, 528, 808
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	3 cut(s)	563, 584, 980
Tsp45I	GTSAC	1 cut(s)	28
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	3 cut(s)	67, 528, 808
Van91I	CCANNNNNTGG	1 cut(s)	461
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	5 cut(s)	216, 226, 512, 549, 642
XbaI	TCTAGA	1 cut(s)	629
XceI	RCATGY	2 cut(s)	486, 851
XmaJI	CCTAGG	1 cut(s)	905
XspI	CTAG	2 cut(s)	630, 906
ZrmI	AGTACT	1 cut(s)	968
Zsp2I	ATGCAT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.