FvH4_7g04320

mRNA transport

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
4901753 .. 4909799
8047 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g04320.t4

Sequence Viewer

Length: 1287 bp
ATGCCTTGCTTTCCCCAACCCGGTTCCGTCACCGTTTGCGAAATCAATCGCGACCTCATCACTTCTGAAAACCTCTCGGATGATGGAGCCAAAGAAACCTACGGCAAGATTCTGGGAATGACATTCAGCCCGGTTCCATTTCAATCAGAAGTCGGGCCTCCACCGACTCCGGACCACGAAACGCCTCCAACAAAGGGATTCCTACAAAGCTTCTTCCATCCTAACCATGTGAGCTTGTTACCAGAAGTTGATCTTCAAGGGCTGAGCTGGCACCCACATAAACATGTTATAGCATTTATATGTGGCTCTAATCAAGTTTTGGTTCGGGATTATGAGGATTCAGAAGGGAAGGAGCCATGCATTTTGGCTAATGAATCTCAGAAAGACGTCAAGGTACTTGAATGGAGGCCAAATGGTGGGAGAACACTTGCTGTGGCATGCAGTGGTGGGATCTGCATTTGGGCCGCTTCTTTCCCTGGCAGTGTTGCATCTGTGAGATCTGGTGCTTCTTCCTTCTTGGGAACTCTCTCCAGAGGTTCTGGAATCCGATATACTTTGGTGGATTTTCTTCGGAGTCATAACAAGGAACAGATTACTGCGCTTTCCTGGAGTCCTGATGGAAGATATTTGGCTTCTGGTTCTTATGAGAGTTCATCATTTACCATATGGGATGTTGCTCAAGGGATTGGGACACCTATTCGACGCGGACTAGCTGGCATATCAATACTGAAGTGGTCACCAACTGGCGATTACTTTTTCTCTGCAAAATTTGATGGATCGTTTTATCTTTGGGAGACAAACACATGGGTATCTGAATCGTGGTCGTCAACTACCGGCTTTGTAAAGGGAGCATCATGGGATCCTGATGGGCGTATGATACTTCTTGCTTTCTCTAAATCTTCAAGTTTGGGGTCCATTCACTTTGCTTCAAAGCCGCCATCACTGGATGCTCACCTATTACCTGTTGAACTACCAGAGATTACAGCCTTAACAAAGAGTCAGGGCATTGAGAAGATAGCTTGGGATGCTTCGGGAGAGCGATTGGCTGTATCTTTTAAAGATTGCGATGAGTTGTATAGTGGTCTTATTGCCATCTATGATGTTAGAAGGACTCCTCTAATCTCTGCATCATTAATTGGGTTTATCAGAGGACCTGGGGAGTGTCCAAAGCCTATAGCATTTTCATTTCATGACAAGTTTAAGCAGGGACCATTGCTTTCTGTGTGTTGGAGCAGTGGATTTTGCTGTACCTACCCTCTGATATTCCGTTCCCATATTCTTCCCTAG

Protein Analysis

429

Amino Acids

46.73

Weight (kDa)

6.01

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_IFT140_1st PF23383 82 - 162 2.2e-06 IFT140 first beta-propeller
Beta-prop_Aladin PF25460 84 - 256 2.5e-26 Aladin seven-bladed propeller
Beta-prop_EML_2 PF23414 85 - 254 8.7e-07 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 125 - 251 3.8e-06 CAF1B/HIR1 beta-propeller domain
WD40 PF00400 187 - 224 2.2e-06 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 192 - 255 2.2e-06 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 196 - 255 7e-06 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 390
AccB1I GGYRCC 1 cut(s) 270
AccB7I CCANNNNNTGG 1 cut(s) 416
AccII CGCG 2 cut(s) 51, 705
AccIII TCCGGA 1 cut(s) 169
AciI CCGC 3 cut(s) 465, 705, 935
AclWI GGATC 4 cut(s) 458, 784, 854, 867
AcsI RAATTY 1 cut(s) 767
AcuI CTGAAG 1 cut(s) 749
AcyI GRCGYC 1 cut(s) 387
AfaI GTAC 2 cut(s) 396, 1249
AfiI CCNNNNNNNGG 3 cut(s) 20, 194, 416
AflIII ACRYGT 1 cut(s) 283
AgsI TTSAA 6 cut(s) 143, 257, 401, 903, 930, 968
AjnI CCWGG 3 cut(s) 475, 605, 1153
AluBI AGCT 5 cut(s) 210, 234, 267, 713, 1019
AluI AGCT 5 cut(s) 210, 234, 267, 713, 1019
Alw26I GTCTC 1 cut(s) 788
AlwI GGATC 4 cut(s) 458, 784, 854, 867
Aor13HI TCCGGA 1 cut(s) 169
AoxI GGCC 3 cut(s) 155, 407, 462
ApoI RAATTY 1 cut(s) 767
AseI ATTAAT 1 cut(s) 1133
AspLEI GCGC 1 cut(s) 601
AspS9I GGNCC 6 cut(s) 155, 172, 462, 912, 1151, 1208
AsuC2I CCSGG 2 cut(s) 21, 131
AsuHPI GGTGA 3 cut(s) 22, 729, 944
AvaII GGWCC 4 cut(s) 172, 912, 1151, 1208
BaeI ACNNNNGTAYC 2 cut(s) 792, 825
BamHI GGATCC 1 cut(s) 859
BanI GGYRCC 1 cut(s) 270
BccI CCATC 7 cut(s) 77, 225, 611, 767, 860, 946, 1100
BceAI ACGGC 1 cut(s) 118
BciT130I CCWGG 3 cut(s) 477, 607, 1155
BcnI CCSGG 2 cut(s) 21, 131
BcoDI GTCTC 1 cut(s) 788
BfaI CTAG 2 cut(s) 710, 1285
BfmI CTRYAG 1 cut(s) 1173
BglII AGATCT 1 cut(s) 497
BisI GCNGC 2 cut(s) 465, 935
BlpI GCTNAGC 1 cut(s) 263
BlsI GCNGC 2 cut(s) 466, 936
Bme1390I CCNGG 5 cut(s) 21, 131, 477, 607, 1155
Bme18I GGWCC 4 cut(s) 172, 912, 1151, 1208
BmgT120I GGNCC 6 cut(s) 155, 172, 462, 912, 1151, 1208
BmiI GGNNCC 8 cut(s) 25, 88, 135, 272, 354, 861, 913, 1209
BmrFI CCNGG 5 cut(s) 21, 131, 477, 607, 1155
BmsI GCATC 5 cut(s) 497, 860, 937, 1015, 1136
BpmI CTGGAG 2 cut(s) 514, 628
Bpu1102I GCTNAGC 1 cut(s) 263
BpuEI CTTGAG 1 cut(s) 663
BpuMI CCSGG 2 cut(s) 21, 131
BsaHI GRCGYC 1 cut(s) 387
BsaJI CCNNGG 2 cut(s) 475, 1154
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 194, 416
Bse118I RCCGGY 1 cut(s) 833
Bse1I ACTGG 2 cut(s) 748, 948
Bse3DI GCAATG 1 cut(s) 1211
BseAI TCCGGA 1 cut(s) 169
BseBI CCWGG 3 cut(s) 477, 607, 1155
BseDI CCNNGG 2 cut(s) 475, 1154
BseGI GGATG 5 cut(s) 85, 217, 676, 952, 1030
BseLI CCNNNNNNNGG 3 cut(s) 20, 194, 416
BseMI GCAATG 1 cut(s) 1211
BseMII CTCAG 2 cut(s) 254, 392
BseNI ACTGG 2 cut(s) 748, 948
BseRI GAGGAG 1 cut(s) 1104
Bsh1236I CGCG 2 cut(s) 51, 705
BshFI GGCC 3 cut(s) 157, 409, 464
BshNI GGYRCC 1 cut(s) 270
BsiSI CCGG 4 cut(s) 21, 131, 170, 834
BslFI GGGAC 2 cut(s) 703, 1221
BslI CCNNNNNNNGG 3 cut(s) 20, 194, 416
BsmAI GTCTC 1 cut(s) 788
BsmFI GGGAC 2 cut(s) 703, 1221
BsnI GGCC 3 cut(s) 157, 409, 464
Bsp13I TCCGGA 1 cut(s) 169
Bsp143I GATC 5 cut(s) 250, 450, 497, 776, 859
Bsp1720I GCTNAGC 1 cut(s) 263
Bsp68I TCGCGA 1 cut(s) 51
BspACI CCGC 3 cut(s) 465, 705, 935
BspANI GGCC 3 cut(s) 157, 409, 464
BspCNI CTCAG 2 cut(s) 255, 391
BspEI TCCGGA 1 cut(s) 169
BspFNI CGCG 2 cut(s) 51, 705
BspHI TCATGA 1 cut(s) 1189
BspLI GGNNCC 8 cut(s) 25, 88, 135, 272, 354, 861, 913, 1209
BspPI GGATC 4 cut(s) 458, 784, 854, 867
BspT107I GGYRCC 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 1211
BsrFI RCCGGY 1 cut(s) 833
BsrI ACTGG 2 cut(s) 748, 948
BssAI RCCGGY 1 cut(s) 833
BssECI CCNNGG 2 cut(s) 475, 1154
BssMI GATC 5 cut(s) 250, 450, 497, 776, 859
BssNI GRCGYC 1 cut(s) 387
Bst2UI CCWGG 3 cut(s) 477, 607, 1155
Bst4CI ACNGT 1 cut(s) 34
BstACI GRCGYC 1 cut(s) 387
BstC8I GCNNGC 3 cut(s) 269, 439, 715
BstDEI CTNAG 2 cut(s) 263, 378
BstEII GGTNACC 1 cut(s) 735
BstF5I GGATG 5 cut(s) 85, 217, 676, 952, 1030
BstFNI CGCG 2 cut(s) 51, 705
BstHHI GCGC 1 cut(s) 601
BstKTI GATC 5 cut(s) 253, 453, 500, 779, 862
BstMAI GTCTC 1 cut(s) 788
BstMBI GATC 5 cut(s) 250, 450, 497, 776, 859
BstMWI GCNNNNNNNGC 2 cut(s) 268, 1025
BstNI CCWGG 3 cut(s) 477, 607, 1155
BstNSI RCATGY 2 cut(s) 287, 441
BstPI GGTNACC 1 cut(s) 735
BstSCI CCNGG 5 cut(s) 19, 129, 475, 605, 1153
BstSFI CTRYAG 1 cut(s) 1173
BstUI CGCG 2 cut(s) 51, 705
BstX2I RGATCY 3 cut(s) 450, 497, 859
BstYI RGATCY 3 cut(s) 450, 497, 859
BsuRI GGCC 3 cut(s) 157, 409, 464
BtgZI GCGATG 1 cut(s) 1080
BtsCI GGATG 5 cut(s) 85, 217, 676, 952, 1030
BtsI GCAGTG 3 cut(s) 448, 487, 1240
BtsIMutI CAGTG 4 cut(s) 448, 487, 941, 1240
BtuMI TCGCGA 1 cut(s) 51
Cac8I GCNNGC 3 cut(s) 269, 439, 715
CciI TCATGA 1 cut(s) 1189
CfoI GCGC 1 cut(s) 601
Cfr10I RCCGGY 1 cut(s) 833
Cfr13I GGNCC 6 cut(s) 155, 172, 462, 912, 1151, 1208
CseI GACGC 1 cut(s) 711
Csp6I GTAC 2 cut(s) 395, 1248
CviAII CATG 7 cut(s) 227, 284, 357, 438, 804, 855, 1190
CviQI GTAC 2 cut(s) 395, 1248
DdeI CTNAG 2 cut(s) 263, 378
DpnI GATC 5 cut(s) 252, 452, 499, 778, 861
DpnII GATC 5 cut(s) 250, 450, 497, 776, 859
DraI TTTAAA 1 cut(s) 1057
Eco47I GGWCC 4 cut(s) 172, 912, 1151, 1208
Eco57I CTGAAG 1 cut(s) 749
Eco91I GGTNACC 1 cut(s) 735
EcoO109I RGGNCCY 1 cut(s) 1151
EcoO65I GGTNACC 1 cut(s) 735
EcoRII CCWGG 3 cut(s) 475, 605, 1153
EcoT22I ATGCAT 1 cut(s) 362
FaeI CATG 7 cut(s) 230, 287, 360, 441, 807, 858, 1193
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FaqI GGGAC 2 cut(s) 703, 1221
FatI CATG 7 cut(s) 226, 283, 356, 437, 803, 854, 1189
FauNDI CATATG 1 cut(s) 665
Fnu4HI GCNGC 2 cut(s) 465, 935
FokI GGATG 5 cut(s) 92, 204, 683, 959, 1037
Fsp4HI GCNGC 2 cut(s) 465, 935
FspBI CTAG 2 cut(s) 710, 1285
GlaI GCGC 1 cut(s) 600
GluI GCNGC 2 cut(s) 465, 935
GsuI CTGGAG 2 cut(s) 514, 628
HaeIII GGCC 3 cut(s) 157, 409, 464
HapII CCGG 4 cut(s) 21, 131, 170, 834
HgaI GACGC 1 cut(s) 711
HhaI GCGC 1 cut(s) 601
Hin1I GRCGYC 1 cut(s) 387
Hin1II CATG 7 cut(s) 230, 287, 360, 441, 807, 858, 1193
Hin6I GCGC 1 cut(s) 599
HinP1I GCGC 1 cut(s) 599
HincII GTYRAC 1 cut(s) 828
HindII GTYRAC 1 cut(s) 828
HindIII AAGCTT 1 cut(s) 208
HpaII CCGG 4 cut(s) 21, 131, 170, 834
HphI GGTGA 3 cut(s) 22, 729, 944
Hpy166II GTNNAC 1 cut(s) 828
Hpy188III TCNNGA 9 cut(s) 50, 170, 326, 531, 540, 614, 863, 1032, 1190
Hpy8I GTNNAC 1 cut(s) 828
Hpy99I CGWCG 1 cut(s) 705
HpyAV CCTTC 4 cut(s) 338, 343, 523, 1101
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 6 cut(s) 360, 441, 456, 488, 764, 1127
HpyF10VI GCNNNNNNNGC 2 cut(s) 268, 1025
HpyF3I CTNAG 2 cut(s) 263, 378
HpySE526I ACGT 1 cut(s) 387
Hsp92I GRCGYC 1 cut(s) 387
Hsp92II CATG 7 cut(s) 230, 287, 360, 441, 807, 858, 1193
HspAI GCGC 1 cut(s) 599
Kpn2I TCCGGA 1 cut(s) 169
Kzo9I GATC 5 cut(s) 250, 450, 497, 776, 859
LmnI GCTCC 4 cut(s) 86, 352, 848, 1230
LweI GCATC 5 cut(s) 497, 860, 937, 1015, 1136
MaeI CTAG 2 cut(s) 710, 1285
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 3 cut(s) 28, 237, 735
MalI GATC 5 cut(s) 252, 452, 499, 778, 861
MboI GATC 5 cut(s) 250, 450, 497, 776, 859
MboII GAAGA 8 cut(s) 205, 245, 501, 560, 633, 891, 1024, 1271
MflI RGATCY 3 cut(s) 450, 497, 859
MluCI AATT 2 cut(s) 767, 1134
MlyI GAGTC 5 cut(s) 160, 583, 619, 1006, 1105
MmeI TCCRAC 2 cut(s) 212, 1208
Mph1103I ATGCAT 1 cut(s) 362
MroI TCCGGA 1 cut(s) 169
MseI TTAA 4 cut(s) 989, 1056, 1133, 1200
MslI CAYNNNNRTG 2 cut(s) 282, 298
MspI CCGG 4 cut(s) 21, 131, 170, 834
MspR9I CCNGG 5 cut(s) 21, 131, 477, 607, 1155
MvaI CCWGG 3 cut(s) 477, 607, 1155
MvnI CGCG 2 cut(s) 51, 705
MwoI GCNNNNNNNGC 2 cut(s) 268, 1025
NciI CCSGG 2 cut(s) 21, 131
NdeI CATATG 1 cut(s) 665
NdeII GATC 5 cut(s) 250, 450, 497, 776, 859
NlaIII CATG 7 cut(s) 230, 287, 360, 441, 807, 858, 1193
NlaIV GGNNCC 8 cut(s) 25, 88, 135, 272, 354, 861, 913, 1209
NmuCI GTSAC 2 cut(s) 28, 735
NruI TCGCGA 1 cut(s) 51
NsiI ATGCAT 1 cut(s) 362
NspI RCATGY 2 cut(s) 287, 441
PaeI GCATGC 1 cut(s) 441
PagI TCATGA 1 cut(s) 1189
PciI ACATGT 1 cut(s) 283
PfeI GAWTC 6 cut(s) 109, 198, 338, 374, 543, 815
PflMI CCANNNNNTGG 1 cut(s) 416
PfoI TCCNGGA 1 cut(s) 605
PkrI GCNGC 2 cut(s) 466, 936
PleI GAGTC 5 cut(s) 160, 582, 618, 1005, 1105
PpsI GAGTC 5 cut(s) 160, 582, 618, 1005, 1105
PpuMI RGGWCCY 1 cut(s) 1151
PscI ACATGT 1 cut(s) 283
PshBI ATTAAT 1 cut(s) 1133
Psp5II RGGWCCY 1 cut(s) 1151
Psp6I CCWGG 3 cut(s) 475, 605, 1153
PspEI GGTNACC 1 cut(s) 735
PspGI CCWGG 3 cut(s) 475, 605, 1153
PspN4I GGNNCC 8 cut(s) 25, 88, 135, 272, 354, 861, 913, 1209
PspPI GGNCC 6 cut(s) 155, 172, 462, 912, 1151, 1208
PspPPI RGGWCCY 1 cut(s) 1151
PsuI RGATCY 3 cut(s) 450, 497, 859
RruI TCGCGA 1 cut(s) 51
RsaI GTAC 2 cut(s) 396, 1249
RsaNI GTAC 2 cut(s) 395, 1248
RseI CAYNNNNRTG 2 cut(s) 282, 298
SaqAI TTAA 4 cut(s) 989, 1056, 1133, 1200
SatI GCNGC 2 cut(s) 465, 935
Sau3AI GATC 5 cut(s) 250, 450, 497, 776, 859
Sau96I GGNCC 6 cut(s) 155, 172, 462, 912, 1151, 1208
SchI GAGTC 5 cut(s) 160, 583, 619, 1006, 1105
ScrFI CCNGG 5 cut(s) 21, 131, 477, 607, 1155
SfaNI GCATC 5 cut(s) 497, 860, 937, 1015, 1136
SfcI CTRYAG 1 cut(s) 1173
SinI GGWCC 4 cut(s) 172, 912, 1151, 1208
SmiMI CAYNNNNRTG 2 cut(s) 282, 298
SmlI CTYRAG 1 cut(s) 678
SmoI CTYRAG 1 cut(s) 678
SphI GCATGC 1 cut(s) 441
Sse9I AATT 2 cut(s) 767, 1134
SsiI CCGC 3 cut(s) 465, 705, 935
SspMI CTAG 2 cut(s) 710, 1285
StyD4I CCNGG 5 cut(s) 19, 129, 475, 605, 1153
TaaI ACNGT 1 cut(s) 34
TaiI ACGT 1 cut(s) 390
TaqI TCGA 1 cut(s) 700
TasI AATT 2 cut(s) 767, 1134
TauI GCSGC 2 cut(s) 467, 937
TfiI GAWTC 6 cut(s) 109, 198, 338, 374, 543, 815
Tru1I TTAA 4 cut(s) 989, 1056, 1133, 1200
Tru9I TTAA 4 cut(s) 989, 1056, 1133, 1200
TscAI CASTG 4 cut(s) 448, 487, 948, 1240
TseFI GTSAC 2 cut(s) 28, 735
Tsp45I GTSAC 2 cut(s) 28, 735
TspDTI ATGAA 4 cut(s) 387, 642, 1173, 1178
TspGWI ACGGA 2 cut(s) 16, 1256
TspRI CASTG 4 cut(s) 448, 487, 948, 1240
Van91I CCANNNNNTGG 1 cut(s) 416
VpaK11BI GGWCC 4 cut(s) 172, 912, 1151, 1208
VspI ATTAAT 1 cut(s) 1133
XapI RAATTY 1 cut(s) 767
XceI RCATGY 2 cut(s) 287, 441
XspI CTAG 2 cut(s) 710, 1285
ZraI GACGTC 1 cut(s) 388
Zsp2I ATGCAT 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.