Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0005614

Physical Location & Seq

Genomic Coordinates Forward (+)

15593107 .. 15596308

Gene Structure 3202 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1101100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGTTTTATTTCTTGAAGCAGAAAAAGTAAACTCTTATTTTGAAACTTATGATTTCATTTGCTTAAATGTTTTCTCAGGGCTTGGTACTCCTATTAGACGAGGACTAGGTGGCATATCAATGCTGAAGTGGTCACCAACTGGGGATTACTTTTTTTCAGCAAAATTTGATGGAACATTTTATCTTTGGGAGACAAACACATGGACATCTGAACCATGGTCTTCAACTAGCGGCTTCGTCAAGGGAGCATCATGGGATCCTGATGGGTGTATGATACTTCTCGCTTTCTCTAAATCTTCAACATTGGGTTCCATTCACTTTGCATCAAAGCCTCCATCACTTGATGCGCACTTATTACCTGTTGAACTACCAGAGATGATGTCCTTAACAAATAGTCAAGGCATTGAGAAGATAGCTTGGGATGCTTCAGGAGAGCGATTGGCTTTATCTTTTAAAGACGGCGGTGACTTATACAGGGGTCTTATTGCCATTTACGACGTTAGGAGGACTCCTCTAATATCTGCAACATTGATTGGGTTTATTAGAGGACCCGGTGACGATCCAAAACCTGTGGCATTTTCATTTCATGACAAGTTTAAACAGGGACCATTGCTTTTTGTGTGTTGGAGTAGTGGATTTTGCTGCACCTACCCTCTCATATTTCGTTCGCATCTTCTTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003008 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006810 GO:0006913 GO:0007610 GO:0007611 GO:0007612 GO:0008150 GO:0009566 GO:0012505 GO:0015630 GO:0016020 GO:0019953 GO:0022414 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046907 GO:0050877 GO:0050890 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

228

Amino Acids

25.22

Weight (kDa)

5.79

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Aladin	PF25460	29 - 219	1.3e-31	Aladin seven-bladed propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56900
fragaria_vesca	FvH4_7g04320 FvH4_7g04320 FvH4_7g04320 FvH4_7g04320
malus_domestica	MD12G1112000.v1.1 MD14G1101000.v1.1 MD14G1101100.v1.1
prunus_persica	Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1
pyrus_communis	pycom12g09160 pycom14g08800
rosa_chinensis	RchiOBHm_Chr1g0329271 RchiOBHm_Chr1g0329281
rosa_laevigata	RLG00000029905
rosa_multiflora	Rmu_co8376675.1_g000001 Rmu_sc0000203.1_g000006 Rmu_sc0010272.1_g000001
rosa_rugosa	Rorug01G0077700
rosa_samantha	Rh1AG096600 Rh1BG077300 Rh1CG093300 Rh1DG099600 Rh1DG100000
rosa_wichuraiana	Rw1G007480 Rw1G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	348
AciI	CCGC	2 cut(s)	231, 462
AclWI	GGATC	3 cut(s)	251, 264, 554
AcsI	RAATTY	1 cut(s)	164
AcuI	CTGAAG	2 cut(s)	146, 411
AfaI	GTAC	1 cut(s)	88
AgsI	TTSAA	5 cut(s)	17, 44, 225, 300, 365
AluBI	AGCT	1 cut(s)	416
AluI	AGCT	1 cut(s)	416
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	3 cut(s)	251, 264, 554
ApeKI	GCWGC	1 cut(s)	642
ApoI	RAATTY	1 cut(s)	164
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	2 cut(s)	548, 605
AsuC2I	CCSGG	1 cut(s)	552
AsuHPI	GGTGA	3 cut(s)	126, 476, 566
AvaII	GGWCC	2 cut(s)	548, 605
BamHI	GGATCC	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	629
BccI	CCATC	3 cut(s)	164, 257, 343
BceAI	ACGGC	1 cut(s)	475
BcnI	CCSGG	1 cut(s)	552
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	3 cut(s)	107, 228, 682
BisI	GCNGC	2 cut(s)	232, 643
BlsI	GCNGC	2 cut(s)	233, 644
Bme1390I	CCNGG	1 cut(s)	552
Bme18I	GGWCC	2 cut(s)	548, 605
BmgT120I	GGNCC	2 cut(s)	548, 605
BmiI	GGNNCC	4 cut(s)	258, 310, 550, 606
BmrFI	CCNGG	1 cut(s)	552
BmrI	ACTGGG	1 cut(s)	150
BmsI	GCATC	5 cut(s)	257, 332, 334, 412, 679
BmuI	ACTGGG	1 cut(s)	150
BpiI	GAAGAC	1 cut(s)	213
BplI	GAGNNNNNCTC	2 cut(s)	496, 528
BpuMI	CCSGG	1 cut(s)	552
BsaJI	CCNNGG	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	145
Bse3DI	GCAATG	1 cut(s)	608
BseDI	CCNNGG	1 cut(s)	215
BseGI	GGATG	1 cut(s)	427
BseMI	GCAATG	1 cut(s)	608
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	145
BseRI	GAGGAG	1 cut(s)	501
BseXI	GCAGC	1 cut(s)	629
BsgI	GTGCAG	1 cut(s)	628
BsiSI	CCGG	1 cut(s)	552
BslFI	GGGAC	1 cut(s)	618
BsmAI	GTCTC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	618
Bsp143I	GATC	2 cut(s)	256, 559
Bsp19I	CCATGG	1 cut(s)	215
BspACI	CCGC	2 cut(s)	231, 462
BspCNI	CTCAG	1 cut(s)	89
BspHI	TCATGA	1 cut(s)	586
BspLI	GGNNCC	4 cut(s)	258, 310, 550, 606
BspPI	GGATC	3 cut(s)	251, 264, 554
BsrDI	GCAATG	1 cut(s)	608
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	2 cut(s)	256, 559
BssT1I	CCWWGG	1 cut(s)	215
BstDEI	CTNAG	1 cut(s)	76
BstDSI	CCRYGG	1 cut(s)	215
BstEII	GGTNACC	1 cut(s)	132
BstF5I	GGATG	1 cut(s)	427
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	2 cut(s)	259, 562
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	2 cut(s)	256, 559
BstMWI	GCNNNNNNNGC	1 cut(s)	422
BstPI	GGTNACC	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	550
BstV1I	GCAGC	1 cut(s)	629
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BtgI	CCRYGG	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	427
CciI	TCATGA	1 cut(s)	586
CfoI	GCGC	1 cut(s)	349
Cfr13I	GGNCC	2 cut(s)	548, 605
Csp6I	GTAC	1 cut(s)	87
CspCI	CAANNNNNGTGG	2 cut(s)	552, 587
CviAII	CATG	4 cut(s)	201, 216, 252, 587
CviJI	RGCY	5 cut(s)	82, 234, 331, 416, 443
CviKI_1	RGCY	5 cut(s)	82, 234, 331, 416, 443
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	1 cut(s)	76
DpnI	GATC	2 cut(s)	258, 561
DpnII	GATC	2 cut(s)	256, 559
DraI	TTTAAA	2 cut(s)	454, 598
Eco130I	CCWWGG	1 cut(s)	215
Eco47I	GGWCC	2 cut(s)	548, 605
Eco57I	CTGAAG	2 cut(s)	146, 411
Eco91I	GGTNACC	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	548
EcoO65I	GGTNACC	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	215
FaeI	CATG	4 cut(s)	204, 219, 255, 590
FaiI	YATR	9 cut(s)	51, 116, 202, 217, 253, 272, 472, 588, 659
FaqI	GGGAC	1 cut(s)	618
FatI	CATG	4 cut(s)	200, 215, 251, 586
Fnu4HI	GCNGC	2 cut(s)	232, 643
FokI	GGATG	1 cut(s)	434
Fsp4HI	GCNGC	2 cut(s)	232, 643
FspAI	RTGCGCAY	1 cut(s)	348
FspBI	CTAG	3 cut(s)	107, 228, 682
FspI	TGCGCA	1 cut(s)	348
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	2 cut(s)	232, 643
HapII	CCGG	1 cut(s)	552
HhaI	GCGC	1 cut(s)	349
Hin1II	CATG	4 cut(s)	204, 219, 255, 590
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HinfI	GANTC	1 cut(s)	508
HpaII	CCGG	1 cut(s)	552
HphI	GGTGA	3 cut(s)	126, 476, 566
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	4 cut(s)	14, 260, 429, 587
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	1 cut(s)	500
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	3 cut(s)	323, 524, 645
HpyF10VI	GCNNNNNNNGC	1 cut(s)	422
HpyF3I	CTNAG	1 cut(s)	76
HpySE526I	ACGT	1 cut(s)	498
Hsp92II	CATG	4 cut(s)	204, 219, 255, 590
HspAI	GCGC	1 cut(s)	347
Kzo9I	GATC	2 cut(s)	256, 559
LmnI	GCTCC	1 cut(s)	245
Lsp1109I	GCAGC	1 cut(s)	629
LweI	GCATC	5 cut(s)	257, 332, 334, 412, 679
MaeI	CTAG	3 cut(s)	107, 228, 682
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	3 cut(s)	132, 464, 554
MalI	GATC	2 cut(s)	258, 561
MboI	GATC	2 cut(s)	256, 559
MboII	GAAGA	5 cut(s)	213, 288, 421, 665, 668
MflI	RGATCY	1 cut(s)	256
MluCI	AATT	1 cut(s)	164
MlyI	GAGTC	1 cut(s)	502
MmeI	TCCRAC	1 cut(s)	605
MnlI	CCTC	6 cut(s)	95, 342, 498, 522, 539, 663
MseI	TTAA	4 cut(s)	65, 386, 453, 597
MslI	CAYNNNNRTG	1 cut(s)	119
MspI	CCGG	1 cut(s)	552
MspR9I	CCNGG	1 cut(s)	552
MssI	GTTTAAAC	1 cut(s)	598
MwoI	GCNNNNNNNGC	1 cut(s)	422
NciI	CCSGG	1 cut(s)	552
NcoI	CCATGG	1 cut(s)	215
NdeII	GATC	2 cut(s)	256, 559
NlaIII	CATG	4 cut(s)	204, 219, 255, 590
NlaIV	GGNNCC	4 cut(s)	258, 310, 550, 606
NmuCI	GTSAC	3 cut(s)	132, 464, 554
NsbI	TGCGCA	1 cut(s)	348
PagI	TCATGA	1 cut(s)	586
PkrI	GCNGC	2 cut(s)	233, 644
PleI	GAGTC	1 cut(s)	502
PmeI	GTTTAAAC	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	502
PpuMI	RGGWCCY	1 cut(s)	548
Psp5II	RGGWCCY	1 cut(s)	548
PspEI	GGTNACC	1 cut(s)	132
PspN4I	GGNNCC	4 cut(s)	258, 310, 550, 606
PspPI	GGNCC	2 cut(s)	548, 605
PspPPI	RGGWCCY	1 cut(s)	548
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	4 cut(s)	65, 386, 453, 597
SatI	GCNGC	2 cut(s)	232, 643
Sau3AI	GATC	2 cut(s)	256, 559
Sau96I	GGNCC	2 cut(s)	548, 605
SchI	GAGTC	1 cut(s)	502
ScrFI	CCNGG	1 cut(s)	552
SetI	ASST	6 cut(s)	112, 361, 418, 501, 571, 650
SfaNI	GCATC	5 cut(s)	257, 332, 334, 412, 679
SinI	GGWCC	2 cut(s)	548, 605
SmiMI	CAYNNNNRTG	1 cut(s)	119
Sse9I	AATT	1 cut(s)	164
SsiI	CCGC	2 cut(s)	231, 462
SspMI	CTAG	3 cut(s)	107, 228, 682
StyD4I	CCNGG	1 cut(s)	550
StyI	CCWWGG	1 cut(s)	215
TaiI	ACGT	1 cut(s)	501
TasI	AATT	1 cut(s)	164
TauI	GCSGC	1 cut(s)	234
Tru1I	TTAA	4 cut(s)	65, 386, 453, 597
Tru9I	TTAA	4 cut(s)	65, 386, 453, 597
TseFI	GTSAC	3 cut(s)	132, 464, 554
TseI	GCWGC	1 cut(s)	642
Tsp45I	GTSAC	3 cut(s)	132, 464, 554
TspDTI	ATGAA	3 cut(s)	46, 570, 575
VpaK11BI	GGWCC	2 cut(s)	548, 605
XapI	RAATTY	1 cut(s)	164
XspI	CTAG	3 cut(s)	107, 228, 682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.