Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005614

Physical Location & Seq

Genomic Coordinates Reverse (-)

18742120 .. 18743660

Gene Structure 1541 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55861

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGCCTTGCTTTCCCAAACCCGGTTCCTTCACCGTTTGCGAAATCAATCGCGACCTAATCACCTCTGAAAACCTCTCCGATGATGGAGCCAAAGAAACTTATGGAAAGATTCTGGGAATGACATTCAGCCCGGTTCCATTTCAATCCGAAGTTGGGCCTCCACCGAGTCCGGACCGCGAAACAGCTCCCACAAAGGGACTCCTACAAAGCCTATTCCATCCTAACCATGTGAACTTGTTACCGGAAGTTGATCTTCAGGGATTGAGCTGGCACCCACATAAACATGTTGTAGCATTTATATCTGGCTCAAATCAAGTTCTAGTTCGAGATTATGAGGATTCAGAAGGGAAGGAGCCGTGCATTTTGGCTAATGAATCGCAGAAAGATGTCAAGGTACTTGAATGGAGGCCAAATGGTGGGAGGACGCTTTCTGTGGCATGTAGTGGTGGGATCTGCATTTGGGCCGCTTCTTTCCCTGGCAGTGTTGCATCTGTGAGATCTGGTGCTTCTTCCTTTTTGGGAACTCTCTCTAGAGGTTCTGGAATCCGATATACTTTGGTGGATTTTCTTCGGAGTCATAACGAGGAACAGATTACTGCACTTTCCTGGAGTCCTGATGGAAGATATCCAAACAAACTCACTTCTGGGTTCAATTATGTTAAATTGAAAACACACTGCATGAAAATGAAGGCTTTCTTGCAACTTATACTAGTTTTTCAGACATGCAAAATGTTTTTTATTCCCCTCTTAAGATCAATTGTTTTTGTTTTCTCTTTGATCCCAGAAATCCACAGAAACTTGCATGCTCCATATCACCTTTTTTTTTCTTTTCCTTTCTTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003008 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006810 GO:0006913 GO:0007610 GO:0007611 GO:0007612 GO:0008150 GO:0009566 GO:0012505 GO:0015630 GO:0016020 GO:0019953 GO:0022414 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046907 GO:0050877 GO:0050890 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

281

Amino Acids

31.36

Weight (kDa)

8.15

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_IFT140_1st	PF23383	83 - 162	2e-06	IFT140 first beta-propeller
Beta-prop_Aladin	PF25460	84 - 208	1.7e-11	Aladin seven-bladed propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56900
fragaria_vesca	FvH4_7g04320 FvH4_7g04320 FvH4_7g04320 FvH4_7g04320
malus_domestica	MD12G1112000.v1.1 MD14G1101000.v1.1 MD14G1101100.v1.1
prunus_persica	Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1
pyrus_communis	pycom12g09160 pycom14g08800
rosa_chinensis	RchiOBHm_Chr1g0329271 RchiOBHm_Chr1g0329281
rosa_laevigata	RLG00000029905
rosa_multiflora	Rmu_co8376675.1_g000001 Rmu_sc0000203.1_g000006 Rmu_sc0010272.1_g000001
rosa_rugosa	Rorug01G0077700
rosa_samantha	Rh1AG096600 Rh1BG077300 Rh1CG093300 Rh1DG099600 Rh1DG100000
rosa_wichuraiana	Rw1G007480 Rw1G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	270
AccB7I	CCANNNNNTGG	1 cut(s)	416
AccII	CGCG	2 cut(s)	51, 177
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	2 cut(s)	175, 465
AclWI	GGATC	2 cut(s)	458, 772
AcuI	CTGAAG	1 cut(s)	239
AfaI	GTAC	1 cut(s)	396
AfiI	CCNNNNNNNGG	4 cut(s)	20, 153, 194, 416
AflII	CTTAAG	1 cut(s)	748
AflIII	ACRYGT	1 cut(s)	283
AgsI	TTSAA	4 cut(s)	143, 401, 652, 667
AhlI	ACTAGT	1 cut(s)	709
AjnI	CCWGG	2 cut(s)	475, 605
AluBI	AGCT	2 cut(s)	185, 267
AluI	AGCT	2 cut(s)	185, 267
AlwI	GGATC	2 cut(s)	458, 772
Aor13HI	TCCGGA	1 cut(s)	169
AoxI	GGCC	3 cut(s)	155, 407, 462
Asp700I	GAANNNNTTC	1 cut(s)	692
AspS9I	GGNCC	3 cut(s)	155, 172, 462
AsuC2I	CCSGG	2 cut(s)	21, 131
AsuHPI	GGTGA	3 cut(s)	22, 52, 806
AvaII	GGWCC	1 cut(s)	172
BanI	GGYRCC	1 cut(s)	270
BccI	CCATC	3 cut(s)	77, 225, 611
BceAI	ACGGC	1 cut(s)	340
BciT130I	CCWGG	2 cut(s)	477, 607
BcnI	CCSGG	2 cut(s)	21, 131
BcuI	ACTAGT	1 cut(s)	709
BfaI	CTAG	3 cut(s)	320, 531, 710
BfrI	CTTAAG	1 cut(s)	748
BglII	AGATCT	1 cut(s)	497
BisI	GCNGC	1 cut(s)	465
BlsI	GCNGC	1 cut(s)	466
Bme1390I	CCNGG	4 cut(s)	21, 131, 477, 607
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	3 cut(s)	155, 172, 462
BmiI	GGNNCC	5 cut(s)	25, 88, 135, 272, 354
BmrFI	CCNGG	4 cut(s)	21, 131, 477, 607
BmsI	GCATC	1 cut(s)	497
BpmI	CTGGAG	1 cut(s)	628
BpuMI	CCSGG	2 cut(s)	21, 131
BsaJI	CCNNGG	1 cut(s)	475
BsaWI	WCCGGW	2 cut(s)	169, 241
Bsc4I	CCNNNNNNNGG	4 cut(s)	20, 153, 194, 416
BseAI	TCCGGA	1 cut(s)	169
BseBI	CCWGG	2 cut(s)	477, 607
BseDI	CCNNGG	1 cut(s)	475
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	4 cut(s)	20, 153, 194, 416
BsgI	GTGCAG	1 cut(s)	582
Bsh1236I	CGCG	2 cut(s)	51, 177
BshFI	GGCC	3 cut(s)	157, 409, 464
BshNI	GGYRCC	1 cut(s)	270
BsiSI	CCGG	4 cut(s)	21, 131, 170, 242
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	4 cut(s)	20, 153, 194, 416
BsmFI	GGGAC	1 cut(s)	210
BsnI	GGCC	3 cut(s)	157, 409, 464
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	5 cut(s)	250, 450, 497, 752, 777
Bsp68I	TCGCGA	1 cut(s)	51
BspACI	CCGC	2 cut(s)	175, 465
BspANI	GGCC	3 cut(s)	157, 409, 464
BspEI	TCCGGA	1 cut(s)	169
BspFNI	CGCG	2 cut(s)	51, 177
BspLI	GGNNCC	5 cut(s)	25, 88, 135, 272, 354
BspPI	GGATC	2 cut(s)	458, 772
BspT107I	GGYRCC	1 cut(s)	270
BspTI	CTTAAG	1 cut(s)	748
BssECI	CCNNGG	1 cut(s)	475
BssMI	GATC	5 cut(s)	250, 450, 497, 752, 777
Bst2UI	CCWGG	2 cut(s)	477, 607
Bst4CI	ACNGT	1 cut(s)	34
BstAFI	CTTAAG	1 cut(s)	748
BstC8I	GCNNGC	2 cut(s)	269, 804
BstF5I	GGATG	1 cut(s)	217
BstFNI	CGCG	2 cut(s)	51, 177
BstKTI	GATC	5 cut(s)	253, 453, 500, 755, 780
BstMBI	GATC	5 cut(s)	250, 450, 497, 752, 777
BstNI	CCWGG	2 cut(s)	477, 607
BstNSI	RCATGY	4 cut(s)	287, 441, 726, 806
BstSCI	CCNGG	4 cut(s)	19, 129, 475, 605
BstUI	CGCG	2 cut(s)	51, 177
BstX2I	RGATCY	2 cut(s)	450, 497
BstYI	RGATCY	2 cut(s)	450, 497
BsuRI	GGCC	3 cut(s)	157, 409, 464
BtsCI	GGATG	1 cut(s)	217
BtsI	GCAGTG	2 cut(s)	487, 673
BtsIMutI	CAGTG	2 cut(s)	487, 673
BtuMI	TCGCGA	1 cut(s)	51
Cac8I	GCNNGC	2 cut(s)	269, 804
Cfr13I	GGNCC	3 cut(s)	155, 172, 462
CpoI	CGGWCCG	1 cut(s)	172
CseI	GACGC	1 cut(s)	433
Csp6I	GTAC	1 cut(s)	395
CspI	CGGWCCG	1 cut(s)	172
CviAII	CATG	6 cut(s)	227, 284, 438, 679, 723, 803
CviQI	GTAC	1 cut(s)	395
DpnI	GATC	5 cut(s)	252, 452, 499, 754, 779
DpnII	GATC	5 cut(s)	250, 450, 497, 752, 777
Eco32I	GATATC	1 cut(s)	626
Eco47I	GGWCC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	239
EcoRII	CCWGG	2 cut(s)	475, 605
EcoRV	GATATC	1 cut(s)	626
FaeI	CATG	6 cut(s)	230, 287, 441, 682, 726, 806
FalI	AAGNNNNNCTT	4 cut(s)	237, 269, 680, 712
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	6 cut(s)	226, 283, 437, 678, 722, 802
Fnu4HI	GCNGC	1 cut(s)	465
FokI	GGATG	1 cut(s)	204
Fsp4HI	GCNGC	1 cut(s)	465
FspBI	CTAG	3 cut(s)	320, 531, 710
GluI	GCNGC	1 cut(s)	465
GsuI	CTGGAG	1 cut(s)	628
HaeIII	GGCC	3 cut(s)	157, 409, 464
HapII	CCGG	4 cut(s)	21, 131, 170, 242
HgaI	GACGC	1 cut(s)	433
Hin1II	CATG	6 cut(s)	230, 287, 441, 682, 726, 806
HinfI	GANTC	8 cut(s)	109, 166, 198, 338, 374, 543, 574, 610
HpaII	CCGG	4 cut(s)	21, 131, 170, 242
HphI	GGTGA	3 cut(s)	22, 52, 806
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	7 cut(s)	67, 79, 148, 343, 548, 573, 720
Hpy188III	TCNNGA	6 cut(s)	50, 170, 326, 531, 540, 614
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	4 cut(s)	37, 338, 343, 682
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4V	TGCA	8 cut(s)	360, 456, 488, 599, 678, 700, 726, 802
Hsp92II	CATG	6 cut(s)	230, 287, 441, 682, 726, 806
Kpn2I	TCCGGA	1 cut(s)	169
Kzo9I	GATC	5 cut(s)	250, 450, 497, 752, 777
LmnI	GCTCC	4 cut(s)	86, 190, 352, 811
LweI	GCATC	1 cut(s)	497
MaeI	CTAG	3 cut(s)	320, 531, 710
MaeIII	GTNAC	1 cut(s)	237
MalI	GATC	5 cut(s)	252, 452, 499, 754, 779
MboI	GATC	5 cut(s)	250, 450, 497, 752, 777
MboII	GAAGA	5 cut(s)	245, 501, 560, 633, 829
MfeI	CAATTG	1 cut(s)	756
MflI	RGATCY	2 cut(s)	450, 497
MluCI	AATT	3 cut(s)	652, 662, 756
MlyI	GAGTC	4 cut(s)	175, 192, 583, 619
MnlI	CCTC	9 cut(s)	73, 83, 168, 328, 399, 414, 527, 577, 755
MroI	TCCGGA	1 cut(s)	169
MroXI	GAANNNNTTC	1 cut(s)	692
MseI	TTAA	2 cut(s)	660, 749
MslI	CAYNNNNRTG	2 cut(s)	282, 683
MspCI	CTTAAG	1 cut(s)	748
MspI	CCGG	4 cut(s)	21, 131, 170, 242
MspR9I	CCNGG	4 cut(s)	21, 131, 477, 607
MunI	CAATTG	1 cut(s)	756
MvaI	CCWGG	2 cut(s)	477, 607
MvnI	CGCG	2 cut(s)	51, 177
NciI	CCSGG	2 cut(s)	21, 131
NdeII	GATC	5 cut(s)	250, 450, 497, 752, 777
NlaIII	CATG	6 cut(s)	230, 287, 441, 682, 726, 806
NlaIV	GGNNCC	5 cut(s)	25, 88, 135, 272, 354
NruI	TCGCGA	1 cut(s)	51
NspI	RCATGY	4 cut(s)	287, 441, 726, 806
PaeI	GCATGC	1 cut(s)	806
PciI	ACATGT	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	692
PfeI	GAWTC	4 cut(s)	109, 338, 374, 543
PflMI	CCANNNNNTGG	1 cut(s)	416
PfoI	TCCNGGA	1 cut(s)	605
PkrI	GCNGC	1 cut(s)	466
PleI	GAGTC	4 cut(s)	174, 192, 582, 618
PpsI	GAGTC	4 cut(s)	174, 192, 582, 618
PscI	ACATGT	1 cut(s)	283
Psp6I	CCWGG	2 cut(s)	475, 605
PspGI	CCWGG	2 cut(s)	475, 605
PspN4I	GGNNCC	5 cut(s)	25, 88, 135, 272, 354
PspPI	GGNCC	3 cut(s)	155, 172, 462
PsuI	RGATCY	2 cut(s)	450, 497
RruI	TCGCGA	1 cut(s)	51
RsaI	GTAC	1 cut(s)	396
RsaNI	GTAC	1 cut(s)	395
RseI	CAYNNNNRTG	2 cut(s)	282, 683
Rsr2I	CGGWCCG	1 cut(s)	172
RsrII	CGGWCCG	1 cut(s)	172
SaqAI	TTAA	2 cut(s)	660, 749
SatI	GCNGC	1 cut(s)	465
Sau3AI	GATC	5 cut(s)	250, 450, 497, 752, 777
Sau96I	GGNCC	3 cut(s)	155, 172, 462
SchI	GAGTC	4 cut(s)	175, 192, 583, 619
ScrFI	CCNGG	4 cut(s)	21, 131, 477, 607
SetI	ASST	8 cut(s)	57, 65, 75, 187, 269, 396, 538, 819
SfaNI	GCATC	1 cut(s)	497
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	2 cut(s)	282, 683
SmlI	CTYRAG	1 cut(s)	748
SmoI	CTYRAG	1 cut(s)	748
SpeI	ACTAGT	1 cut(s)	709
SphI	GCATGC	1 cut(s)	806
Sse9I	AATT	3 cut(s)	652, 662, 756
SsiI	CCGC	2 cut(s)	175, 465
SspMI	CTAG	3 cut(s)	320, 531, 710
StyD4I	CCNGG	4 cut(s)	19, 129, 475, 605
TaaI	ACNGT	1 cut(s)	34
TaqI	TCGA	1 cut(s)	325
TasI	AATT	3 cut(s)	652, 662, 756
TauI	GCSGC	1 cut(s)	467
TfiI	GAWTC	4 cut(s)	109, 338, 374, 543
Tru1I	TTAA	2 cut(s)	660, 749
Tru9I	TTAA	2 cut(s)	660, 749
TscAI	CASTG	2 cut(s)	487, 680
TspDTI	ATGAA	3 cut(s)	387, 695, 701
TspRI	CASTG	2 cut(s)	487, 680
Van91I	CCANNNNNTGG	1 cut(s)	416
Vha464I	CTTAAG	1 cut(s)	748
VpaK11BI	GGWCC	1 cut(s)	172
XbaI	TCTAGA	1 cut(s)	530
XceI	RCATGY	4 cut(s)	287, 441, 726, 806
XmnI	GAANNNNTTC	1 cut(s)	692
XspI	CTAG	3 cut(s)	320, 531, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.