Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005614

Physical Location & Seq

Genomic Coordinates Reverse (-)

11866372 .. 11869603

Gene Structure 3232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG077300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCCTTGCTTTCCCCAACCCGGTTCCGTCACCGTTTGCGAAATCAATCGCGACCTAATCACTTCTGAAAACCTCTCGGATGATGGAGCCAAAGAAGCTTATGGAAAGATTCTGGGAATCACATTCAGCCCGGTTCCATTTCAATCCGAAGTTGGGCCTCCACCGAGTCCGGACCGCGAAACAGCTCCAACAAAAGGACTCCTACAAAGCCTATTCCATCCTAACCATGTGAACTTGTTGCCAGAAGTTGATCTTCAGGGATTGAGCTGGCACCCACATAAACATGTTGTAGCATTTATATCTGGCTCAAATCAAGTTCTAGTTCGAGATTACGAGGATTCAGAAGGGAAGGAGCCGTGCATTTTGGCTAATGAATCACAGAAAGACGTCAAGGTACTTGAATGGAGGCCAAATGGTGGGAGGACACTTTCTGTGGCATGTAGGCAAGTCAAAGAGTTCCTGCCTGATGACATTTTTGTGATGAATAAGCTGATCATTCTTTTATTGTTAAACAGTGATGGAACATTTTATCTTTGGGAGACAAACACATGGGTATCTGAATCATGGTCTTCAACCGGTGGCTTTGTAAAGGTTAGCTACAGTGCTACTTTCAATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003008 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006810 GO:0006913 GO:0007610 GO:0007611 GO:0007612 GO:0008150 GO:0009566 GO:0012505 GO:0015630 GO:0016020 GO:0019953 GO:0022414 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046907 GO:0050877 GO:0050890 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

206

Amino Acids

22.87

Weight (kDa)

4.97

Isoelectric Point (pI)

48.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Aladin	PF25460	84 - 149	7.3e-08	Aladin seven-bladed propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56900
fragaria_vesca	FvH4_7g04320 FvH4_7g04320 FvH4_7g04320 FvH4_7g04320
malus_domestica	MD12G1112000.v1.1 MD14G1101000.v1.1 MD14G1101100.v1.1
prunus_persica	Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1
pyrus_communis	pycom12g09160 pycom14g08800
rosa_chinensis	RchiOBHm_Chr1g0329271 RchiOBHm_Chr1g0329281
rosa_laevigata	RLG00000029905
rosa_multiflora	Rmu_co8376675.1_g000001 Rmu_sc0000203.1_g000006 Rmu_sc0010272.1_g000001
rosa_rugosa	Rorug01G0077700
rosa_samantha	Rh1AG096600 Rh1BG077300 Rh1CG093300 Rh1DG099600 Rh1DG100000
rosa_wichuraiana	Rw1G007480 Rw1G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	390
AccB1I	GGYRCC	1 cut(s)	270
AccB7I	CCANNNNNTGG	1 cut(s)	416
AccII	CGCG	2 cut(s)	51, 177
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	387
AfaI	GTAC	1 cut(s)	396
AfiI	CCNNNNNNNGG	4 cut(s)	20, 153, 194, 416
AflIII	ACRYGT	1 cut(s)	283
AgeI	ACCGGT	1 cut(s)	575
AgsI	TTSAA	4 cut(s)	143, 401, 573, 613
AluBI	AGCT	5 cut(s)	98, 185, 267, 490, 597
AluI	AGCT	5 cut(s)	98, 185, 267, 490, 597
Alw26I	GTCTC	1 cut(s)	533
Aor13HI	TCCGGA	1 cut(s)	169
AoxI	GGCC	2 cut(s)	155, 407
AsiGI	ACCGGT	1 cut(s)	575
AspS9I	GGNCC	2 cut(s)	155, 172
AsuC2I	CCSGG	2 cut(s)	21, 131
AsuHPI	GGTGA	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	172
BaeI	ACNNNNGTAYC	2 cut(s)	537, 570
BanI	GGYRCC	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	561
BccI	CCATC	3 cut(s)	77, 225, 512
BceAI	ACGGC	1 cut(s)	340
BclI	TGATCA	1 cut(s)	492
BcnI	CCSGG	2 cut(s)	21, 131
BcoDI	GTCTC	1 cut(s)	533
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	1 cut(s)	598
Bme1390I	CCNGG	2 cut(s)	21, 131
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	2 cut(s)	155, 172
BmiI	GGNNCC	5 cut(s)	25, 88, 135, 272, 354
BmrFI	CCNGG	2 cut(s)	21, 131
BpiI	GAAGAC	1 cut(s)	561
BpuMI	CCSGG	2 cut(s)	21, 131
BsaHI	GRCGYC	1 cut(s)	387
BsaWI	WCCGGW	2 cut(s)	169, 575
Bsc4I	CCNNNNNNNGG	4 cut(s)	20, 153, 194, 416
Bse118I	RCCGGY	1 cut(s)	575
BseAI	TCCGGA	1 cut(s)	169
BseGI	GGATG	2 cut(s)	85, 217
BseLI	CCNNNNNNNGG	4 cut(s)	20, 153, 194, 416
Bsh1236I	CGCG	2 cut(s)	51, 177
BshFI	GGCC	2 cut(s)	157, 409
BshNI	GGYRCC	1 cut(s)	270
BshTI	ACCGGT	1 cut(s)	575
BsiSI	CCGG	4 cut(s)	21, 131, 170, 576
BslI	CCNNNNNNNGG	4 cut(s)	20, 153, 194, 416
BsmAI	GTCTC	1 cut(s)	533
BsnI	GGCC	2 cut(s)	157, 409
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	2 cut(s)	250, 492
Bsp68I	TCGCGA	1 cut(s)	51
BspACI	CCGC	1 cut(s)	175
BspANI	GGCC	2 cut(s)	157, 409
BspEI	TCCGGA	1 cut(s)	169
BspFNI	CGCG	2 cut(s)	51, 177
BspLI	GGNNCC	5 cut(s)	25, 88, 135, 272, 354
BspT107I	GGYRCC	1 cut(s)	270
BsrFI	RCCGGY	1 cut(s)	575
BssAI	RCCGGY	1 cut(s)	575
BssMI	GATC	2 cut(s)	250, 492
BssNI	GRCGYC	1 cut(s)	387
Bst4CI	ACNGT	3 cut(s)	34, 515, 602
BstACI	GRCGYC	1 cut(s)	387
BstC8I	GCNNGC	1 cut(s)	269
BstF5I	GGATG	2 cut(s)	85, 217
BstFNI	CGCG	2 cut(s)	51, 177
BstKTI	GATC	2 cut(s)	253, 495
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	2 cut(s)	250, 492
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNSI	RCATGY	2 cut(s)	287, 441
BstSCI	CCNGG	2 cut(s)	19, 129
BstSFI	CTRYAG	1 cut(s)	598
BstUI	CGCG	2 cut(s)	51, 177
BstV2I	GAAGAC	1 cut(s)	561
BsuRI	GGCC	2 cut(s)	157, 409
BtsCI	GGATG	2 cut(s)	85, 217
BtsIMutI	CAGTG	2 cut(s)	520, 607
BtuMI	TCGCGA	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	269
Cfr10I	RCCGGY	1 cut(s)	575
Cfr13I	GGNCC	2 cut(s)	155, 172
CpoI	CGGWCCG	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	395
CspAI	ACCGGT	1 cut(s)	575
CspI	CGGWCCG	1 cut(s)	172
CviAII	CATG	5 cut(s)	227, 284, 438, 549, 564
CviQI	GTAC	1 cut(s)	395
DpnI	GATC	2 cut(s)	252, 494
DpnII	GATC	2 cut(s)	250, 492
Eco47I	GGWCC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	239
FaeI	CATG	5 cut(s)	230, 287, 441, 552, 567
FaiI	YATR	8 cut(s)	102, 228, 279, 285, 299, 439, 550, 565
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FatI	CATG	5 cut(s)	226, 283, 437, 548, 563
FbaI	TGATCA	1 cut(s)	492
FokI	GGATG	2 cut(s)	92, 204
FspBI	CTAG	1 cut(s)	320
HaeIII	GGCC	2 cut(s)	157, 409
HapII	CCGG	4 cut(s)	21, 131, 170, 576
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	5 cut(s)	230, 287, 441, 552, 567
HindIII	AAGCTT	1 cut(s)	96
HinfI	GANTC	7 cut(s)	109, 117, 166, 198, 338, 374, 560
HpaII	CCGG	4 cut(s)	21, 131, 170, 576
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	5 cut(s)	67, 79, 148, 343, 559
Hpy188III	TCNNGA	3 cut(s)	50, 170, 326
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	2 cut(s)	338, 343
HpyCH4III	ACNGT	3 cut(s)	34, 515, 602
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	1 cut(s)	360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpySE526I	ACGT	1 cut(s)	387
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	5 cut(s)	230, 287, 441, 552, 567
Kpn2I	TCCGGA	1 cut(s)	169
Ksp22I	TGATCA	1 cut(s)	492
Kzo9I	GATC	2 cut(s)	250, 492
LmnI	GCTCC	3 cut(s)	86, 190, 352
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	2 cut(s)	252, 494
MboI	GATC	2 cut(s)	250, 492
MboII	GAAGA	2 cut(s)	245, 561
MluCI	AATT	1 cut(s)	613
MlyI	GAGTC	2 cut(s)	175, 192
MmeI	TCCRAC	1 cut(s)	212
MnlI	CCTC	5 cut(s)	83, 168, 328, 399, 414
MroI	TCCGGA	1 cut(s)	169
MseI	TTAA	1 cut(s)	509
MslI	CAYNNNNRTG	2 cut(s)	282, 476
MspI	CCGG	4 cut(s)	21, 131, 170, 576
MspR9I	CCNGG	2 cut(s)	21, 131
MvnI	CGCG	2 cut(s)	51, 177
MwoI	GCNNNNNNNGC	1 cut(s)	95
NciI	CCSGG	2 cut(s)	21, 131
NdeII	GATC	2 cut(s)	250, 492
NlaIII	CATG	5 cut(s)	230, 287, 441, 552, 567
NlaIV	GGNNCC	5 cut(s)	25, 88, 135, 272, 354
NmuCI	GTSAC	1 cut(s)	28
NruI	TCGCGA	1 cut(s)	51
NspI	RCATGY	2 cut(s)	287, 441
PciI	ACATGT	1 cut(s)	283
PfeI	GAWTC	5 cut(s)	109, 117, 338, 374, 560
PflMI	CCANNNNNTGG	1 cut(s)	416
PinAI	ACCGGT	1 cut(s)	575
PleI	GAGTC	2 cut(s)	174, 192
PpsI	GAGTC	2 cut(s)	174, 192
PscI	ACATGT	1 cut(s)	283
PspN4I	GGNNCC	5 cut(s)	25, 88, 135, 272, 354
PspPI	GGNCC	2 cut(s)	155, 172
RruI	TCGCGA	1 cut(s)	51
RsaI	GTAC	1 cut(s)	396
RsaNI	GTAC	1 cut(s)	395
RseI	CAYNNNNRTG	2 cut(s)	282, 476
Rsr2I	CGGWCCG	1 cut(s)	172
RsrII	CGGWCCG	1 cut(s)	172
SaqAI	TTAA	1 cut(s)	509
Sau3AI	GATC	2 cut(s)	250, 492
Sau96I	GGNCC	2 cut(s)	155, 172
SchI	GAGTC	2 cut(s)	175, 192
ScrFI	CCNGG	2 cut(s)	21, 131
SfcI	CTRYAG	1 cut(s)	598
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	2 cut(s)	282, 476
Sse9I	AATT	1 cut(s)	613
SsiI	CCGC	1 cut(s)	175
SspMI	CTAG	1 cut(s)	320
StyD4I	CCNGG	2 cut(s)	19, 129
TaaI	ACNGT	3 cut(s)	34, 515, 602
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	1 cut(s)	325
TasI	AATT	1 cut(s)	613
TfiI	GAWTC	5 cut(s)	109, 117, 338, 374, 560
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TscAI	CASTG	2 cut(s)	520, 607
TseFI	GTSAC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	387, 497
TspGWI	ACGGA	1 cut(s)	16
TspRI	CASTG	2 cut(s)	520, 607
Van91I	CCANNNNNTGG	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	172
XceI	RCATGY	2 cut(s)	287, 441
XspI	CTAG	1 cut(s)	320
ZraI	GACGTC	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.