Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005614

Physical Location & Seq

Genomic Coordinates Reverse (-)

18751535 .. 18752852

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG099600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGACATTCTGCCCAGGTTTCATTTCAATTGGGTCATCAGCAACTTCTGCCGCCACCGAGTCCAGACCACGAAGTTGCAACAACAGCTCCAACAAAGGGAGTTTTACAAAAACTGAAGGGGTAACCTTGTTACTGGAAGTTGATCTTCAAGGATTGATCTGGCACCCACATAAACATGTTATAGCATTTATATCTGGCCCCATTGAAGTACTAGTTCAGGATAACGAGGATTCCGGTTGGATGATTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003008 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006810 GO:0006913 GO:0007610 GO:0007611 GO:0007612 GO:0008150 GO:0009566 GO:0012505 GO:0015630 GO:0016020 GO:0019953 GO:0022414 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046907 GO:0050877 GO:0050890 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

83

Amino Acids

8.98

Weight (kDa)

5.4

Isoelectric Point (pI)

62.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56900
fragaria_vesca	FvH4_7g04320 FvH4_7g04320 FvH4_7g04320 FvH4_7g04320
malus_domestica	MD12G1112000.v1.1 MD14G1101000.v1.1 MD14G1101100.v1.1
prunus_persica	Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1
pyrus_communis	pycom12g09160 pycom14g08800
rosa_chinensis	RchiOBHm_Chr1g0329271 RchiOBHm_Chr1g0329281
rosa_laevigata	RLG00000029905
rosa_multiflora	Rmu_co8376675.1_g000001 Rmu_sc0000203.1_g000006 Rmu_sc0010272.1_g000001
rosa_rugosa	Rorug01G0077700
rosa_samantha	Rh1AG096600 Rh1BG077300 Rh1CG093300 Rh1DG099600 Rh1DG100000
rosa_wichuraiana	Rw1G007480 Rw1G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	162
AciI	CCGC	1 cut(s)	51
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	96
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	3 cut(s)	27, 149, 206
AhlI	ACTAGT	1 cut(s)	211
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	1 cut(s)	87
AluI	AGCT	1 cut(s)	87
AoxI	GGCC	1 cut(s)	196
AspS9I	GGNCC	1 cut(s)	197
BanI	GGYRCC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	15
BcuI	ACTAGT	1 cut(s)	211
BfaI	CTAG	2 cut(s)	212, 250
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
BmcAI	AGTACT	1 cut(s)	210
Bme1390I	CCNGG	1 cut(s)	15
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	2 cut(s)	164, 199
BmrFI	CCNGG	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	13
BsaWI	WCCGGW	1 cut(s)	233
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	138
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	13
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	198
BshNI	GGYRCC	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	96
BsnI	GGCC	1 cut(s)	198
Bsp143I	GATC	2 cut(s)	142, 156
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	1 cut(s)	198
BspLI	GGNNCC	2 cut(s)	164, 199
BspT107I	GGYRCC	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	2 cut(s)	142, 156
Bst2UI	CCWGG	1 cut(s)	15
BstAPI	GCANNNNNTGC	1 cut(s)	47
BstEII	GGTNACC	1 cut(s)	121
BstF5I	GGATG	1 cut(s)	246
BstKTI	GATC	2 cut(s)	145, 159
BstMBI	GATC	2 cut(s)	142, 156
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 84
BstNI	CCWGG	1 cut(s)	15
BstNSI	RCATGY	1 cut(s)	179
BstPI	GGTNACC	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	2 cut(s)	87, 198
CviKI_1	RGCY	2 cut(s)	87, 198
CviQI	GTAC	1 cut(s)	209
DpnI	GATC	2 cut(s)	144, 158
DpnII	GATC	2 cut(s)	142, 156
Eco57I	CTGAAG	1 cut(s)	135
Eco91I	GGTNACC	1 cut(s)	121
EcoO65I	GGTNACC	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	13
FaeI	CATG	1 cut(s)	179
FaiI	YATR	4 cut(s)	171, 177, 182, 191
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FatI	CATG	1 cut(s)	175
Fnu4HI	GCNGC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	2 cut(s)	212, 250
GluI	GCNGC	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	1 cut(s)	234
Hin1II	CATG	1 cut(s)	179
HinfI	GANTC	2 cut(s)	59, 230
HpaII	CCGG	1 cut(s)	234
Hpy188III	TCNNGA	2 cut(s)	63, 218
HpyAV	CCTTC	1 cut(s)	110
HpyCH4V	TGCA	1 cut(s)	78
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 84
Hsp92II	CATG	1 cut(s)	179
Kzo9I	GATC	2 cut(s)	142, 156
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	7 cut(s)	27, 76, 119, 145, 180, 203, 247
MaeI	CTAG	2 cut(s)	212, 250
MaeIII	GTNAC	2 cut(s)	121, 129
MalI	GATC	2 cut(s)	144, 158
MboI	GATC	2 cut(s)	142, 156
MboII	GAAGA	1 cut(s)	137
MfeI	CAATTG	1 cut(s)	27
MluCI	AATT	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	2 cut(s)	114, 218
MnlI	CCTC	1 cut(s)	220
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	174
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	15
MunI	CAATTG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	47, 84
NdeII	GATC	2 cut(s)	142, 156
NlaIII	CATG	1 cut(s)	179
NlaIV	GGNNCC	2 cut(s)	164, 199
NspI	RCATGY	1 cut(s)	179
PciI	ACATGT	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PscI	ACATGT	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	13
PspEI	GGTNACC	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	2 cut(s)	164, 199
PspPI	GGNCC	1 cut(s)	197
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	142, 156
Sau96I	GGNCC	1 cut(s)	197
ScaI	AGTACT	1 cut(s)	210
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	15
SetI	ASST	3 cut(s)	19, 89, 128
SmiMI	CAYNNNNRTG	1 cut(s)	174
SpeI	ACTAGT	1 cut(s)	211
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	1 cut(s)	51
SspMI	CTAG	2 cut(s)	212, 250
StyD4I	CCNGG	1 cut(s)	13
TasI	AATT	1 cut(s)	27
TatI	WGTACW	1 cut(s)	208
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TspDTI	ATGAA	1 cut(s)	10
XceI	RCATGY	1 cut(s)	179
XspI	CTAG	2 cut(s)	212, 250
ZrmI	AGTACT	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.