Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010272.1

Orthogroup ID

OG0005614

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 8634

Gene Structure 8634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010272.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

agaaagcaggaatcaggaatgccttgctttccccaacccggttgcttcaccgtttgcgaaatcaatcgcgacctaatcacttctgtaaacctctcggatgatggagccaaagaaacttatggaaagattctgggaatgacattcagcccggttccatttcaatccgaagttgggcctccaccgagtccggaccgcgaaacagctcccaaaaggggactcctacaaagcctattccatcctaaccatgtgaacttgttaccggaagttgatcttcagggattgagctggcacccacataaacacattatagcatttatatctggctcaaatcaagttctagttcgagattacgaggattcagaagggaaggagccgtgcattttggctaatgaatcgcagaaagacgtcaaggtacttgaatggaggccaaatggtgggaggacgctttctgtggcatgtagtggtgggatctgcatttgggccgcttctttccctggcagtgttgcatctgtgagatctggtgcttcttccttcttgggaactctctccagaggttctggaatccgatatactttggtggattttcttcgcagtcataacgaggaacagattactgcactttcctggagtcctgatggaagatatccaaacaaactcatttctggttcatcatttaccatatgggatgttgctcaagggattgggacacctattcgacgcggactaggtggcatatcaatgctgaagtggtcaccaactggcgattactttttctccgcaaaatttgatggaacgttttatctttgggagacaaacacatgggcatctgaatcatggtcatcaactagcggctttgtaaagggagcatcatgggatcctgatgggcgtatgatacttcttgccttctctaaatcttcaactttggggtccattcactttgcttcaaagccgccatctctggagataaccgaaacgctgccgttcggggtgttcctgtggttctcgtcttctgggtttgtcccactgtgccgtccgagctcgtatcagggtgttgaaatcactgtggcattgccaccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003008 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006810 GO:0006913 GO:0007610 GO:0007611 GO:0007612 GO:0008150 GO:0009566 GO:0012505 GO:0015630 GO:0016020 GO:0019953 GO:0022414 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046907 GO:0050877 GO:0050890 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

359

Amino Acids

39.15

Weight (kDa)

6.2

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56900
fragaria_vesca	FvH4_7g04320 FvH4_7g04320 FvH4_7g04320 FvH4_7g04320
malus_domestica	MD12G1112000.v1.1 MD14G1101000.v1.1 MD14G1101100.v1.1
prunus_persica	Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1
pyrus_communis	pycom12g09160 pycom14g08800
rosa_chinensis	RchiOBHm_Chr1g0329271 RchiOBHm_Chr1g0329281
rosa_laevigata	RLG00000029905
rosa_multiflora	Rmu_co8376675.1_g000001 Rmu_sc0000203.1_g000006 Rmu_sc0010272.1_g000001
rosa_rugosa	Rorug01G0077700
rosa_samantha	Rh1AG096600 Rh1BG077300 Rh1CG093300 Rh1DG099600 Rh1DG100000
rosa_wichuraiana	Rw1G007480 Rw1G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	408
AccB1I	GGYRCC	1 cut(s)	288
AccB7I	CCANNNNNTGG	1 cut(s)	434
AccII	CGCG	3 cut(s)	69, 195, 720
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	6 cut(s)	193, 483, 720, 777, 849, 950
AclI	AACGTT	1 cut(s)	794
AclWI	GGATC	3 cut(s)	476, 869, 882
AcsI	RAATTY	1 cut(s)	782
AcuI	CTGAAG	2 cut(s)	257, 764
AcyI	GRCGYC	1 cut(s)	405
AfaI	GTAC	1 cut(s)	414
AfiI	CCNNNNNNNGG	4 cut(s)	38, 171, 212, 434
AgsI	TTSAA	5 cut(s)	161, 419, 918, 945, 1055
AjnI	CCWGG	2 cut(s)	493, 623
AluBI	AGCT	3 cut(s)	203, 285, 1038
AluI	AGCT	3 cut(s)	203, 285, 1038
Alw21I	GWGCWC	1 cut(s)	1040
Alw26I	GTCTC	1 cut(s)	803
AlwI	GGATC	3 cut(s)	476, 869, 882
Aor13HI	TCCGGA	1 cut(s)	187
AoxI	GGCC	3 cut(s)	173, 425, 480
ApeKI	GCWGC	1 cut(s)	976
ApoI	RAATTY	1 cut(s)	782
AspS9I	GGNCC	4 cut(s)	173, 190, 480, 927
AsuC2I	CCSGG	2 cut(s)	39, 149
AsuHPI	GGTGA	2 cut(s)	40, 744
AvaII	GGWCC	2 cut(s)	190, 927
BamHI	GGATCC	1 cut(s)	874
BanI	GGYRCC	1 cut(s)	288
BanII	GRGCYC	1 cut(s)	1040
BbsI	GAAGAC	1 cut(s)	999
Bbv12I	GWGCWC	1 cut(s)	1040
BbvI	GCAGC	1 cut(s)	963
BccI	CCATC	6 cut(s)	95, 243, 629, 782, 875, 961
BceAI	ACGGC	3 cut(s)	358, 964, 1014
BciT130I	CCWGG	2 cut(s)	495, 625
BcnI	CCSGG	2 cut(s)	39, 149
BcoDI	GTCTC	1 cut(s)	803
BfaI	CTAG	3 cut(s)	338, 725, 846
BglII	AGATCT	1 cut(s)	515
BisI	GCNGC	4 cut(s)	483, 850, 950, 977
BlsI	GCNGC	4 cut(s)	484, 851, 951, 978
Bme1390I	CCNGG	4 cut(s)	39, 149, 495, 625
Bme18I	GGWCC	2 cut(s)	190, 927
BmgT120I	GGNCC	4 cut(s)	173, 190, 480, 927
BmiI	GGNNCC	6 cut(s)	106, 153, 290, 372, 876, 928
BmrFI	CCNGG	4 cut(s)	39, 149, 495, 625
BmsI	GCATC	3 cut(s)	515, 833, 875
BpiI	GAAGAC	1 cut(s)	999
BpmI	CTGGAG	3 cut(s)	532, 646, 980
BpuEI	CTTGAG	1 cut(s)	678
BpuMI	CCSGG	2 cut(s)	39, 149
BsaHI	GRCGYC	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	493
BsaWI	WCCGGW	2 cut(s)	187, 259
BsaXI	ACNNNNNCTCC	2 cut(s)	758, 788
Bsc4I	CCNNNNNNNGG	4 cut(s)	38, 171, 212, 434
Bse1I	ACTGG	1 cut(s)	763
Bse3DI	GCAATG	1 cut(s)	1067
BseAI	TCCGGA	1 cut(s)	187
BseBI	CCWGG	2 cut(s)	495, 625
BseDI	CCNNGG	1 cut(s)	493
BseGI	GGATG	3 cut(s)	103, 235, 691
BseLI	CCNNNNNNNGG	4 cut(s)	38, 171, 212, 434
BseMI	GCAATG	1 cut(s)	1067
BseNI	ACTGG	1 cut(s)	763
BseXI	GCAGC	1 cut(s)	963
BsgI	GTGCAG	1 cut(s)	600
Bsh1236I	CGCG	3 cut(s)	69, 195, 720
BshFI	GGCC	3 cut(s)	175, 427, 482
BshNI	GGYRCC	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	1040
BsiSI	CCGG	4 cut(s)	39, 149, 188, 260
BslFI	GGGAC	3 cut(s)	228, 718, 1004
BslI	CCNNNNNNNGG	4 cut(s)	38, 171, 212, 434
BsmAI	GTCTC	1 cut(s)	803
BsmFI	GGGAC	3 cut(s)	228, 718, 1004
BsmI	GAATGC	1 cut(s)	24
BsnI	GGCC	3 cut(s)	175, 427, 482
Bsp1286I	GDGCHC	1 cut(s)	1040
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	4 cut(s)	268, 468, 515, 874
Bsp68I	TCGCGA	1 cut(s)	69
BspACI	CCGC	6 cut(s)	193, 483, 720, 777, 849, 950
BspANI	GGCC	3 cut(s)	175, 427, 482
BspEI	TCCGGA	1 cut(s)	187
BspFNI	CGCG	3 cut(s)	69, 195, 720
BspLI	GGNNCC	6 cut(s)	106, 153, 290, 372, 876, 928
BspPI	GGATC	3 cut(s)	476, 869, 882
BspT107I	GGYRCC	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	1067
BsrI	ACTGG	1 cut(s)	763
BssECI	CCNNGG	1 cut(s)	493
BssMI	GATC	4 cut(s)	268, 468, 515, 874
BssNI	GRCGYC	1 cut(s)	405
Bst2UI	CCWGG	2 cut(s)	495, 625
Bst4CI	ACNGT	3 cut(s)	52, 1026, 1063
BstACI	GRCGYC	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	287
BstEII	GGTNACC	1 cut(s)	750
BstF5I	GGATG	3 cut(s)	103, 235, 691
BstFNI	CGCG	3 cut(s)	69, 195, 720
BstKTI	GATC	4 cut(s)	271, 471, 518, 877
BstMAI	GTCTC	1 cut(s)	803
BstMBI	GATC	4 cut(s)	268, 468, 515, 874
BstMWI	GCNNNNNNNGC	1 cut(s)	1035
BstNI	CCWGG	2 cut(s)	495, 625
BstNSI	RCATGY	1 cut(s)	459
BstPI	GGTNACC	1 cut(s)	750
BstSCI	CCNGG	4 cut(s)	37, 147, 493, 623
BstUI	CGCG	3 cut(s)	69, 195, 720
BstV1I	GCAGC	1 cut(s)	963
BstV2I	GAAGAC	1 cut(s)	999
BstX2I	RGATCY	3 cut(s)	468, 515, 874
BstYI	RGATCY	3 cut(s)	468, 515, 874
BsuRI	GGCC	3 cut(s)	175, 427, 482
BtsCI	GGATG	3 cut(s)	103, 235, 691
BtsI	GCAGTG	1 cut(s)	505
BtsIMutI	CAGTG	3 cut(s)	505, 1022, 1059
BtuMI	TCGCGA	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	287
Cfr13I	GGNCC	4 cut(s)	173, 190, 480, 927
CpoI	CGGWCCG	1 cut(s)	190
CseI	GACGC	2 cut(s)	451, 726
Csp6I	GTAC	1 cut(s)	413
CspI	CGGWCCG	1 cut(s)	190
CviAII	CATG	5 cut(s)	245, 456, 819, 834, 870
CviQI	GTAC	1 cut(s)	413
DpnI	GATC	4 cut(s)	270, 470, 517, 876
DpnII	GATC	4 cut(s)	268, 468, 515, 874
Ecl136II	GAGCTC	1 cut(s)	1038
Eco24I	GRGCYC	1 cut(s)	1040
Eco32I	GATATC	1 cut(s)	644
Eco47I	GGWCC	2 cut(s)	190, 927
Eco53kI	GAGCTC	1 cut(s)	1038
Eco57I	CTGAAG	2 cut(s)	257, 764
Eco91I	GGTNACC	1 cut(s)	750
EcoICRI	GAGCTC	1 cut(s)	1038
EcoO65I	GGTNACC	1 cut(s)	750
EcoRII	CCWGG	2 cut(s)	493, 623
EcoRV	GATATC	1 cut(s)	644
EcoT38I	GRGCYC	1 cut(s)	1040
FaeI	CATG	5 cut(s)	248, 459, 822, 837, 873
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FaqI	GGGAC	3 cut(s)	228, 718, 1004
FatI	CATG	5 cut(s)	244, 455, 818, 833, 869
FauNDI	CATATG	1 cut(s)	680
Fnu4HI	GCNGC	4 cut(s)	483, 850, 950, 977
FokI	GGATG	3 cut(s)	110, 222, 698
FriOI	GRGCYC	1 cut(s)	1040
Fsp4HI	GCNGC	4 cut(s)	483, 850, 950, 977
FspBI	CTAG	3 cut(s)	338, 725, 846
GluI	GCNGC	4 cut(s)	483, 850, 950, 977
GsuI	CTGGAG	3 cut(s)	532, 646, 980
HaeIII	GGCC	3 cut(s)	175, 427, 482
HapII	CCGG	4 cut(s)	39, 149, 188, 260
HgaI	GACGC	2 cut(s)	451, 726
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	5 cut(s)	248, 459, 822, 837, 873
HinfI	GANTC	9 cut(s)	11, 127, 184, 216, 356, 392, 561, 628, 830
HpaII	CCGG	4 cut(s)	39, 149, 188, 260
HphI	GGTGA	2 cut(s)	40, 744
Hpy166II	GTNNAC	2 cut(s)	88, 250
Hpy188I	TCNGA	6 cut(s)	97, 166, 361, 566, 829, 1035
Hpy188III	TCNNGA	9 cut(s)	15, 68, 188, 344, 549, 558, 632, 878, 959
Hpy8I	GTNNAC	2 cut(s)	88, 250
Hpy99I	CGWCG	1 cut(s)	720
HpyAV	CCTTC	4 cut(s)	356, 361, 541, 913
HpyCH4III	ACNGT	3 cut(s)	52, 1026, 1063
HpyCH4IV	ACGT	2 cut(s)	405, 794
HpyCH4V	TGCA	4 cut(s)	378, 474, 506, 617
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1035
HpySE526I	ACGT	2 cut(s)	405, 794
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	5 cut(s)	248, 459, 822, 837, 873
Kpn2I	TCCGGA	1 cut(s)	187
Kzo9I	GATC	4 cut(s)	268, 468, 515, 874
LmnI	GCTCC	4 cut(s)	104, 208, 370, 863
Lsp1109I	GCAGC	1 cut(s)	963
LweI	GCATC	3 cut(s)	515, 833, 875
MaeI	CTAG	3 cut(s)	338, 725, 846
MaeII	ACGT	2 cut(s)	405, 794
MaeIII	GTNAC	2 cut(s)	255, 750
MalI	GATC	4 cut(s)	270, 470, 517, 876
MboI	GATC	4 cut(s)	268, 468, 515, 874
MboII	GAAGA	6 cut(s)	263, 519, 578, 651, 906, 999
MflI	RGATCY	3 cut(s)	468, 515, 874
MhlI	GDGCHC	1 cut(s)	1040
MluCI	AATT	1 cut(s)	782
MlyI	GAGTC	3 cut(s)	193, 210, 637
MnlI	CCTC	7 cut(s)	101, 186, 346, 417, 432, 545, 595
MroI	TCCGGA	1 cut(s)	187
MseI	TTAA	1 cut(s)	1078
MslI	CAYNNNNRTG	1 cut(s)	737
MspI	CCGG	4 cut(s)	39, 149, 188, 260
MspR9I	CCNGG	4 cut(s)	39, 149, 495, 625
Mva1269I	GAATGC	1 cut(s)	24
MvaI	CCWGG	2 cut(s)	495, 625
MvnI	CGCG	3 cut(s)	69, 195, 720
MwoI	GCNNNNNNNGC	1 cut(s)	1035
NciI	CCSGG	2 cut(s)	39, 149
NdeI	CATATG	1 cut(s)	680
NdeII	GATC	4 cut(s)	268, 468, 515, 874
NlaIII	CATG	5 cut(s)	248, 459, 822, 837, 873
NlaIV	GGNNCC	6 cut(s)	106, 153, 290, 372, 876, 928
NmuCI	GTSAC	1 cut(s)	750
NruI	TCGCGA	1 cut(s)	69
NspI	RCATGY	1 cut(s)	459
PctI	GAATGC	1 cut(s)	24
PfeI	GAWTC	6 cut(s)	11, 127, 356, 392, 561, 830
PflMI	CCANNNNNTGG	1 cut(s)	434
PfoI	TCCNGGA	1 cut(s)	623
PkrI	GCNGC	4 cut(s)	484, 851, 951, 978
PleI	GAGTC	3 cut(s)	192, 210, 636
PpsI	GAGTC	3 cut(s)	192, 210, 636
Psp124BI	GAGCTC	1 cut(s)	1040
Psp1406I	AACGTT	1 cut(s)	794
Psp6I	CCWGG	2 cut(s)	493, 623
PspEI	GGTNACC	1 cut(s)	750
PspGI	CCWGG	2 cut(s)	493, 623
PspN4I	GGNNCC	6 cut(s)	106, 153, 290, 372, 876, 928
PspPI	GGNCC	4 cut(s)	173, 190, 480, 927
PsuI	RGATCY	3 cut(s)	468, 515, 874
RruI	TCGCGA	1 cut(s)	69
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
RseI	CAYNNNNRTG	1 cut(s)	737
Rsr2I	CGGWCCG	1 cut(s)	190
RsrII	CGGWCCG	1 cut(s)	190
SacI	GAGCTC	1 cut(s)	1040
SaqAI	TTAA	1 cut(s)	1078
SatI	GCNGC	4 cut(s)	483, 850, 950, 977
Sau3AI	GATC	4 cut(s)	268, 468, 515, 874
Sau96I	GGNCC	4 cut(s)	173, 190, 480, 927
SchI	GAGTC	3 cut(s)	193, 210, 637
ScrFI	CCNGG	4 cut(s)	39, 149, 495, 625
SduI	GDGCHC	1 cut(s)	1040
SfaNI	GCATC	3 cut(s)	515, 833, 875
SinI	GGWCC	2 cut(s)	190, 927
SmiMI	CAYNNNNRTG	1 cut(s)	737
SmlI	CTYRAG	1 cut(s)	693
SmoI	CTYRAG	1 cut(s)	693
Sse9I	AATT	1 cut(s)	782
SsiI	CCGC	6 cut(s)	193, 483, 720, 777, 849, 950
SspMI	CTAG	3 cut(s)	338, 725, 846
SstI	GAGCTC	1 cut(s)	1040
StyD4I	CCNGG	4 cut(s)	37, 147, 493, 623
TaaI	ACNGT	3 cut(s)	52, 1026, 1063
TaiI	ACGT	2 cut(s)	408, 797
TaqI	TCGA	2 cut(s)	343, 715
TasI	AATT	1 cut(s)	782
TauI	GCSGC	3 cut(s)	485, 852, 952
TfiI	GAWTC	6 cut(s)	11, 127, 356, 392, 561, 830
Tru1I	TTAA	1 cut(s)	1078
Tru9I	TTAA	1 cut(s)	1078
TscAI	CASTG	3 cut(s)	505, 1029, 1066
TseFI	GTSAC	1 cut(s)	750
TseI	GCWGC	1 cut(s)	976
Tsp45I	GTSAC	1 cut(s)	750
TspDTI	ATGAA	2 cut(s)	405, 657
TspRI	CASTG	3 cut(s)	505, 1029, 1066
Van91I	CCANNNNNTGG	1 cut(s)	434
VpaK11BI	GGWCC	2 cut(s)	190, 927
XapI	RAATTY	1 cut(s)	782
XceI	RCATGY	1 cut(s)	459
XspI	CTAG	3 cut(s)	338, 725, 846
ZraI	GACGTC	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.