Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005614

Physical Location & Seq

Genomic Coordinates Reverse (-)

18762110 .. 18771484

Gene Structure 9375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG100000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGCCTTGCTTTCCCCAACCCGGTTCCTTCACCGTTTGCGAAATCAATCGCGACCTAATCACCTCTGAAAACCTCTCCGATGATGGAGCCAAAGAAACTTATGGAAAGATTCTGGGAATGACATTCAGCCCGGTTCCATTTCAATCCGAAGTTGGGCCTCCACCGAGTCCGGACCGCGAAACAGCTCCCACAAAGGGACTCCTACAAAGCCTATTCCATCCTAACCATGTGAACTTGTTACCGGAAGTTGATCTTCAGGGATTGAGCTGGCACCCACATAAACATGTTATAGCATTTATATCTGGCTCAAATCAAGTTCTAGTTCGAGATTACGAGGATTCAGAAGGGAAGGAGCCGTGCATTTTGGCTAATGAATCGCAGAAAGACGTCAAGGTACTTGAATGGAGGCCAAATGGTGGGAGGACACTTTCTGTGGCATGTAGTGGTGGGATCTGCATTTGGGCCGCTTCTTTCCCTGGCAGTGTTGCATCTAGTTCATCATTTACCATATGGGATGTTGCTCAAGGGATTGGGACACCTATTCGACGTGGACTAGCTGGCATATCAATACTGAAGTGGTCACCAACTGGCGATTACTTTTTCTCCGCAAAATTTGATGGAACGTTTTATCTTTGGGAGACAAACACATGGGCATCTGAATCATGGTCTTCAACTAGCGGCTTTGTAAAGGGAGCATCATGGGATCCTGATGGGCGTATGATACTTCTTGCCTTCTCTAAATCTTCAACTTTGGGGTCCATTCACTTTGCTTCAAAGCCACCATCACTGGATGCGCACCTATTACCTGTCGAACTACCAGAGATTACGGCCTCAACAAACAGTCAGGGCATTGAGAAGATAGCTTGGGATGCTTCGGGAGAGCGATTGGCTGTATCTTTTAAAGATTGTGATGAGTTGTATAGAGGTCTGATTGCCATCTATGATGTTAGAAGGACTCCTCTTATATCTGCATCATTAATTGGATTTATCAGAGGACCTGGGGAGTATCCAAAGCCTATAGCATTTTCATTCCATGACAAGTTTAAGCAAGGACCATTGCTTTCTGTGGGTGTTGAAATCACTGTGGCATTCCCCATTCCAGGTTTCCTACAGAGTTTCGCTTATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003008 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006810 GO:0006913 GO:0007610 GO:0007611 GO:0007612 GO:0008150 GO:0009566 GO:0012505 GO:0015630 GO:0016020 GO:0019953 GO:0022414 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046907 GO:0050877 GO:0050890 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

376

Amino Acids

41.0

Weight (kDa)

5.42

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_IFT140_1st	PF23383	83 - 165	1.5e-06	IFT140 first beta-propeller
Beta-prop_Aladin	PF25460	85 - 165	1.4e-10	Aladin seven-bladed propeller
Beta-prop_Aladin	PF25460	164 - 358	8.2e-32	Aladin seven-bladed propeller
Beta-prop_THOC3	PF25174	165 - 302	2.8e-07	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56900
fragaria_vesca	FvH4_7g04320 FvH4_7g04320 FvH4_7g04320 FvH4_7g04320
malus_domestica	MD12G1112000.v1.1 MD14G1101000.v1.1 MD14G1101100.v1.1
prunus_persica	Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1
pyrus_communis	pycom12g09160 pycom14g08800
rosa_chinensis	RchiOBHm_Chr1g0329271 RchiOBHm_Chr1g0329281
rosa_laevigata	RLG00000029905
rosa_multiflora	Rmu_co8376675.1_g000001 Rmu_sc0000203.1_g000006 Rmu_sc0010272.1_g000001
rosa_rugosa	Rorug01G0077700
rosa_samantha	Rh1AG096600 Rh1BG077300 Rh1CG093300 Rh1DG099600 Rh1DG100000
rosa_wichuraiana	Rw1G007480 Rw1G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	390
Acc16I	TGCGCA	1 cut(s)	795
AccB1I	GGYRCC	1 cut(s)	270
AccB7I	CCANNNNNTGG	1 cut(s)	416
AccII	CGCG	2 cut(s)	51, 177
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	4 cut(s)	175, 465, 606, 678
AclI	AACGTT	1 cut(s)	623
AclWI	GGATC	3 cut(s)	458, 698, 711
AcsI	RAATTY	1 cut(s)	611
AcuI	CTGAAG	2 cut(s)	239, 593
AcyI	GRCGYC	1 cut(s)	387
AfaI	GTAC	1 cut(s)	396
AfiI	CCNNNNNNNGG	5 cut(s)	20, 153, 194, 416, 1100
AflIII	ACRYGT	1 cut(s)	283
AgsI	TTSAA	6 cut(s)	143, 401, 672, 747, 774, 1076
AjiI	CACGTC	1 cut(s)	548
AjnI	CCWGG	3 cut(s)	475, 997, 1099
AluBI	AGCT	4 cut(s)	185, 267, 557, 863
AluI	AGCT	4 cut(s)	185, 267, 557, 863
Alw26I	GTCTC	1 cut(s)	632
AlwI	GGATC	3 cut(s)	458, 698, 711
Aor13HI	TCCGGA	1 cut(s)	169
AoxI	GGCC	4 cut(s)	155, 407, 462, 828
ApoI	RAATTY	1 cut(s)	611
AseI	ATTAAT	1 cut(s)	977
AspLEI	GCGC	1 cut(s)	796
AspS9I	GGNCC	6 cut(s)	155, 172, 462, 756, 995, 1052
AsuC2I	CCSGG	2 cut(s)	21, 131
AsuHPI	GGTGA	3 cut(s)	22, 52, 573
AvaII	GGWCC	4 cut(s)	172, 756, 995, 1052
BamHI	GGATCC	1 cut(s)	703
BanI	GGYRCC	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	660
BccI	CCATC	6 cut(s)	77, 225, 611, 704, 790, 944
BceAI	ACGGC	2 cut(s)	340, 843
BciT130I	CCWGG	3 cut(s)	477, 999, 1101
BciVI	GTATCC	1 cut(s)	1017
BcnI	CCSGG	2 cut(s)	21, 131
BcoDI	GTCTC	1 cut(s)	632
BfaI	CTAG	4 cut(s)	320, 492, 554, 675
BfmI	CTRYAG	2 cut(s)	1017, 1109
BfuI	GTATCC	1 cut(s)	1017
BisI	GCNGC	2 cut(s)	465, 679
BlsI	GCNGC	2 cut(s)	466, 680
Bme1390I	CCNGG	5 cut(s)	21, 131, 477, 999, 1101
Bme18I	GGWCC	4 cut(s)	172, 756, 995, 1052
BmgBI	CACGTC	1 cut(s)	548
BmgT120I	GGNCC	6 cut(s)	155, 172, 462, 756, 995, 1052
BmiI	GGNNCC	7 cut(s)	25, 88, 135, 272, 354, 705, 757
BmrFI	CCNGG	5 cut(s)	21, 131, 477, 999, 1101
BmsI	GCATC	6 cut(s)	497, 662, 704, 781, 859, 980
BpiI	GAAGAC	1 cut(s)	660
BpuEI	CTTGAG	1 cut(s)	507
BpuMI	CCSGG	2 cut(s)	21, 131
BsaBI	GATNNNNATC	1 cut(s)	935
BsaHI	GRCGYC	1 cut(s)	387
BsaJI	CCNNGG	2 cut(s)	475, 998
BsaWI	WCCGGW	2 cut(s)	169, 241
BsaXI	ACNNNNNCTCC	2 cut(s)	587, 617
Bsc4I	CCNNNNNNNGG	5 cut(s)	20, 153, 194, 416, 1100
Bse1I	ACTGG	2 cut(s)	592, 792
Bse3DI	GCAATG	1 cut(s)	1055
Bse8I	GATNNNNATC	1 cut(s)	935
BseAI	TCCGGA	1 cut(s)	169
BseBI	CCWGG	3 cut(s)	477, 999, 1101
BseDI	CCNNGG	2 cut(s)	475, 998
BseGI	GGATG	4 cut(s)	217, 520, 796, 874
BseJI	GATNNNNATC	1 cut(s)	935
BseLI	CCNNNNNNNGG	5 cut(s)	20, 153, 194, 416, 1100
BseMI	GCAATG	1 cut(s)	1055
BseNI	ACTGG	2 cut(s)	592, 792
BseRI	GAGGAG	1 cut(s)	948
Bsh1236I	CGCG	2 cut(s)	51, 177
BshFI	GGCC	4 cut(s)	157, 409, 464, 830
BshNI	GGYRCC	1 cut(s)	270
BsiSI	CCGG	4 cut(s)	21, 131, 170, 242
BslFI	GGGAC	2 cut(s)	210, 547
BslI	CCNNNNNNNGG	5 cut(s)	20, 153, 194, 416, 1100
BsmAI	GTCTC	1 cut(s)	632
BsmFI	GGGAC	2 cut(s)	210, 547
BsmI	GAATGC	1 cut(s)	1088
BsnI	GGCC	4 cut(s)	157, 409, 464, 830
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	3 cut(s)	250, 450, 703
Bsp68I	TCGCGA	1 cut(s)	51
BspACI	CCGC	4 cut(s)	175, 465, 606, 678
BspANI	GGCC	4 cut(s)	157, 409, 464, 830
BspEI	TCCGGA	1 cut(s)	169
BspFNI	CGCG	2 cut(s)	51, 177
BspLI	GGNNCC	7 cut(s)	25, 88, 135, 272, 354, 705, 757
BspPI	GGATC	3 cut(s)	458, 698, 711
BspT107I	GGYRCC	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	1055
BsrI	ACTGG	2 cut(s)	592, 792
BssECI	CCNNGG	2 cut(s)	475, 998
BssMI	GATC	3 cut(s)	250, 450, 703
BssNI	GRCGYC	1 cut(s)	387
Bst2UI	CCWGG	3 cut(s)	477, 999, 1101
Bst4CI	ACNGT	3 cut(s)	34, 842, 1084
BstACI	GRCGYC	1 cut(s)	387
BstC8I	GCNNGC	2 cut(s)	269, 559
BstEII	GGTNACC	1 cut(s)	579
BstF5I	GGATG	4 cut(s)	217, 520, 796, 874
BstFNI	CGCG	2 cut(s)	51, 177
BstHHI	GCGC	1 cut(s)	796
BstKTI	GATC	3 cut(s)	253, 453, 706
BstMAI	GTCTC	1 cut(s)	632
BstMBI	GATC	3 cut(s)	250, 450, 703
BstMWI	GCNNNNNNNGC	1 cut(s)	869
BstNI	CCWGG	3 cut(s)	477, 999, 1101
BstNSI	RCATGY	2 cut(s)	287, 441
BstPI	GGTNACC	1 cut(s)	579
BstSCI	CCNGG	5 cut(s)	19, 129, 475, 997, 1099
BstSFI	CTRYAG	2 cut(s)	1017, 1109
BstUI	CGCG	2 cut(s)	51, 177
BstV2I	GAAGAC	1 cut(s)	660
BstX2I	RGATCY	2 cut(s)	450, 703
BstYI	RGATCY	2 cut(s)	450, 703
BsuI	GTATCC	1 cut(s)	1017
BsuRI	GGCC	4 cut(s)	157, 409, 464, 830
BtrI	CACGTC	1 cut(s)	548
BtsCI	GGATG	4 cut(s)	217, 520, 796, 874
BtsI	GCAGTG	1 cut(s)	487
BtsIMutI	CAGTG	3 cut(s)	487, 785, 1080
BtuMI	TCGCGA	1 cut(s)	51
Cac8I	GCNNGC	2 cut(s)	269, 559
CfoI	GCGC	1 cut(s)	796
Cfr13I	GGNCC	6 cut(s)	155, 172, 462, 756, 995, 1052
CpoI	CGGWCCG	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	395
CspI	CGGWCCG	1 cut(s)	172
CviAII	CATG	7 cut(s)	227, 284, 438, 648, 663, 699, 1034
CviQI	GTAC	1 cut(s)	395
DpnI	GATC	3 cut(s)	252, 452, 705
DpnII	GATC	3 cut(s)	250, 450, 703
DraI	TTTAAA	1 cut(s)	901
Eco47I	GGWCC	4 cut(s)	172, 756, 995, 1052
Eco57I	CTGAAG	2 cut(s)	239, 593
Eco91I	GGTNACC	1 cut(s)	579
EcoO109I	RGGNCCY	1 cut(s)	995
EcoO65I	GGTNACC	1 cut(s)	579
EcoRII	CCWGG	3 cut(s)	475, 997, 1099
FaeI	CATG	7 cut(s)	230, 287, 441, 651, 666, 702, 1037
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FaqI	GGGAC	2 cut(s)	210, 547
FatI	CATG	7 cut(s)	226, 283, 437, 647, 662, 698, 1033
FauNDI	CATATG	1 cut(s)	509
Fnu4HI	GCNGC	2 cut(s)	465, 679
FokI	GGATG	4 cut(s)	204, 527, 803, 881
Fsp4HI	GCNGC	2 cut(s)	465, 679
FspAI	RTGCGCAY	1 cut(s)	795
FspBI	CTAG	4 cut(s)	320, 492, 554, 675
FspI	TGCGCA	1 cut(s)	795
GlaI	GCGC	1 cut(s)	795
GluI	GCNGC	2 cut(s)	465, 679
HaeIII	GGCC	4 cut(s)	157, 409, 464, 830
HapII	CCGG	4 cut(s)	21, 131, 170, 242
HhaI	GCGC	1 cut(s)	796
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	7 cut(s)	230, 287, 441, 651, 666, 702, 1037
Hin6I	GCGC	1 cut(s)	794
HinP1I	GCGC	1 cut(s)	794
HinfI	GANTC	7 cut(s)	109, 166, 198, 338, 374, 659, 955
HpaII	CCGG	4 cut(s)	21, 131, 170, 242
HphI	GGTGA	3 cut(s)	22, 52, 573
Hpy166II	GTNNAC	2 cut(s)	232, 551
Hpy188I	TCNGA	7 cut(s)	67, 79, 148, 343, 658, 930, 992
Hpy188III	TCNNGA	5 cut(s)	50, 170, 326, 707, 876
Hpy8I	GTNNAC	2 cut(s)	232, 551
Hpy99I	CGWCG	1 cut(s)	549
HpyAV	CCTTC	5 cut(s)	37, 338, 343, 742, 945
HpyCH4III	ACNGT	3 cut(s)	34, 842, 1084
HpyCH4IV	ACGT	3 cut(s)	387, 547, 623
HpyCH4V	TGCA	4 cut(s)	360, 456, 488, 971
HpyF10VI	GCNNNNNNNGC	1 cut(s)	869
HpySE526I	ACGT	3 cut(s)	387, 547, 623
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	7 cut(s)	230, 287, 441, 651, 666, 702, 1037
HspAI	GCGC	1 cut(s)	794
Kpn2I	TCCGGA	1 cut(s)	169
Kzo9I	GATC	3 cut(s)	250, 450, 703
LmnI	GCTCC	4 cut(s)	86, 190, 352, 692
LweI	GCATC	6 cut(s)	497, 662, 704, 781, 859, 980
MaeI	CTAG	4 cut(s)	320, 492, 554, 675
MaeII	ACGT	3 cut(s)	387, 547, 623
MaeIII	GTNAC	2 cut(s)	237, 579
MalI	GATC	3 cut(s)	252, 452, 705
MboI	GATC	3 cut(s)	250, 450, 703
MboII	GAAGA	4 cut(s)	245, 660, 735, 868
MflI	RGATCY	2 cut(s)	450, 703
MluCI	AATT	2 cut(s)	611, 978
MlyI	GAGTC	3 cut(s)	175, 192, 949
MroI	TCCGGA	1 cut(s)	169
MseI	TTAA	3 cut(s)	900, 977, 1044
MslI	CAYNNNNRTG	1 cut(s)	282
MspI	CCGG	4 cut(s)	21, 131, 170, 242
MspR9I	CCNGG	5 cut(s)	21, 131, 477, 999, 1101
Mva1269I	GAATGC	1 cut(s)	1088
MvaI	CCWGG	3 cut(s)	477, 999, 1101
MvnI	CGCG	2 cut(s)	51, 177
MwoI	GCNNNNNNNGC	1 cut(s)	869
NciI	CCSGG	2 cut(s)	21, 131
NdeI	CATATG	1 cut(s)	509
NdeII	GATC	3 cut(s)	250, 450, 703
NlaIII	CATG	7 cut(s)	230, 287, 441, 651, 666, 702, 1037
NlaIV	GGNNCC	7 cut(s)	25, 88, 135, 272, 354, 705, 757
NmuCI	GTSAC	1 cut(s)	579
NruI	TCGCGA	1 cut(s)	51
NsbI	TGCGCA	1 cut(s)	795
NspI	RCATGY	2 cut(s)	287, 441
PciI	ACATGT	1 cut(s)	283
PctI	GAATGC	1 cut(s)	1088
PfeI	GAWTC	4 cut(s)	109, 338, 374, 659
PflMI	CCANNNNNTGG	1 cut(s)	416
PkrI	GCNGC	2 cut(s)	466, 680
PleI	GAGTC	3 cut(s)	174, 192, 949
PpsI	GAGTC	3 cut(s)	174, 192, 949
PpuMI	RGGWCCY	1 cut(s)	995
PscI	ACATGT	1 cut(s)	283
PshBI	ATTAAT	1 cut(s)	977
Psp1406I	AACGTT	1 cut(s)	623
Psp5II	RGGWCCY	1 cut(s)	995
Psp6I	CCWGG	3 cut(s)	475, 997, 1099
PspEI	GGTNACC	1 cut(s)	579
PspGI	CCWGG	3 cut(s)	475, 997, 1099
PspN4I	GGNNCC	7 cut(s)	25, 88, 135, 272, 354, 705, 757
PspPI	GGNCC	6 cut(s)	155, 172, 462, 756, 995, 1052
PspPPI	RGGWCCY	1 cut(s)	995
PsuI	RGATCY	2 cut(s)	450, 703
RruI	TCGCGA	1 cut(s)	51
RsaI	GTAC	1 cut(s)	396
RsaNI	GTAC	1 cut(s)	395
RseI	CAYNNNNRTG	1 cut(s)	282
Rsr2I	CGGWCCG	1 cut(s)	172
RsrII	CGGWCCG	1 cut(s)	172
SaqAI	TTAA	3 cut(s)	900, 977, 1044
SatI	GCNGC	2 cut(s)	465, 679
Sau3AI	GATC	3 cut(s)	250, 450, 703
Sau96I	GGNCC	6 cut(s)	155, 172, 462, 756, 995, 1052
SchI	GAGTC	3 cut(s)	175, 192, 949
ScrFI	CCNGG	5 cut(s)	21, 131, 477, 999, 1101
SfaNI	GCATC	6 cut(s)	497, 662, 704, 781, 859, 980
SfcI	CTRYAG	2 cut(s)	1017, 1109
SinI	GGWCC	4 cut(s)	172, 756, 995, 1052
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	522
SmoI	CTYRAG	1 cut(s)	522
Sse9I	AATT	2 cut(s)	611, 978
SsiI	CCGC	4 cut(s)	175, 465, 606, 678
SspMI	CTAG	4 cut(s)	320, 492, 554, 675
StyD4I	CCNGG	5 cut(s)	19, 129, 475, 997, 1099
TaaI	ACNGT	3 cut(s)	34, 842, 1084
TaiI	ACGT	3 cut(s)	390, 550, 626
TaqI	TCGA	3 cut(s)	325, 544, 810
TasI	AATT	2 cut(s)	611, 978
TauI	GCSGC	2 cut(s)	467, 681
TfiI	GAWTC	4 cut(s)	109, 338, 374, 659
Tru1I	TTAA	3 cut(s)	900, 977, 1044
Tru9I	TTAA	3 cut(s)	900, 977, 1044
TscAI	CASTG	3 cut(s)	487, 792, 1087
TseFI	GTSAC	1 cut(s)	579
Tsp45I	GTSAC	1 cut(s)	579
TspDTI	ATGAA	3 cut(s)	387, 486, 1017
TspRI	CASTG	3 cut(s)	487, 792, 1087
Van91I	CCANNNNNTGG	1 cut(s)	416
VpaK11BI	GGWCC	4 cut(s)	172, 756, 995, 1052
VspI	ATTAAT	1 cut(s)	977
XapI	RAATTY	1 cut(s)	611
XceI	RCATGY	2 cut(s)	287, 441
XspI	CTAG	4 cut(s)	320, 492, 554, 675
ZraI	GACGTC	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.