Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005614

Physical Location & Seq

Genomic Coordinates Forward (+)

15937526 .. 15943922

Gene Structure 6397 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G007560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGCCTTGCTTTCCCCAACCCGGTTGCTTCACCGTTTGCGAAATCAATCGCGACCTAATCACTTCTGTAAACCTCTCGGATGATGGAGCCAAAGAAACTTATGGAAAGATTCTGGGAATGACATTCAGCCCGGTTCCATTTCAATCCGAAGTTGGGCCTCCACCGAGTCCAGACCGCGAAACAGCTCCCAAAAAGGGACTCCTACAAAGCCTATTCCATCCTAACCATGTGAACTTGTTACCGGAAGTTGATCTTCAGGGATTGAGCTGGCACCCACATAAACACATTATAGCATTTATATCTGGCTCAAATCAAGTTCTAGTTCGAGATTACGAGGATTCAGGAGCCGTGCATTTGGCTAATGAATCGCAGAAAGACGTCAAGGTACTTGAATGGAGGCCAAATGGTGGGAGGACGCTTTCTGTGGCATGTAGTGGTGGGATCTGCATTTGGGCCGCTTCTTTCCCTGGCAGTGTTGCATCTGTGAGATCTGGTGCTTCTTCCTTCTTGGGAACTCTCTCCAGAGGTTCTGGAATCCGATATACTTTGGTGGATTTTCTTCGCAGTCATAACGAGGAACAGATTACTGCACTCTCCTGGAGGATTGGGACACCTATTCGACGCGGACTAGGTGGCATATCAATGCTGAAGTGGTCACCAACTGGCGATTACTTTTTCTCCGCAAAATTTGATGGAACGTTTTATCTTTGGGAGACAAACACATGGGCATCTGAATCATGGTCATCAACTAGCGGCTTTGTAAAGGGAGCATCATGGGATCCTGATGGGCGTATGATACTTCTTGCCTTCTCTAAATCTTCAACTTTGGGGTCCATTCACTTTGCTTCAAAGCCGCCATCTCTGGATGCACACCTATTACCTGTTGAACTACCAGAGATTACGGCCTTAACAAACAGTCAGGGCATTGAGAAGATAGCTTGGGATGCTTCGGGAGAGCGATTGGCTGTATCTTTTAAAGATGGCGATGAGTTGTATAGAGGTCTGATTGCCATCTATGATGTTAGAAGGACTCCTCTTATCTCTGCATCATTAATTGGATTTATCAGAGGACCTGGGGAGTATCCAAAGCCTATAGCATTTTCATTCCATGACAAGTTTAAGCAAGGACCATTGCTTTCTGTGTGTTGGAGCAGTGGATTTTGCTGTACCTATCCTCTGATATTCGTTCCCACGTTCTTCCTTAGTTTGTTCCTGAATTGCTCTCCTACCTCTGATGATGTTTTTGCATTTGCCATCACAGTAATGTTTTGTACATCATTTTGTAAAATTGAATATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003008 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006810 GO:0006913 GO:0007610 GO:0007611 GO:0007612 GO:0008150 GO:0009566 GO:0012505 GO:0015630 GO:0016020 GO:0019953 GO:0022414 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046907 GO:0050877 GO:0050890 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

433

Amino Acids

47.49

Weight (kDa)

6.21

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_IFT140_1st	PF23383	83 - 159	2.6e-07	IFT140 first beta-propeller
Beta-prop_Aladin	PF25460	85 - 393	9.8e-46	Aladin seven-bladed propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56900
fragaria_vesca	FvH4_7g04320 FvH4_7g04320 FvH4_7g04320 FvH4_7g04320
malus_domestica	MD12G1112000.v1.1 MD14G1101000.v1.1 MD14G1101100.v1.1
prunus_persica	Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1
pyrus_communis	pycom12g09160 pycom14g08800
rosa_chinensis	RchiOBHm_Chr1g0329271 RchiOBHm_Chr1g0329281
rosa_laevigata	RLG00000029905
rosa_multiflora	Rmu_co8376675.1_g000001 Rmu_sc0000203.1_g000006 Rmu_sc0010272.1_g000001
rosa_rugosa	Rorug01G0077700
rosa_samantha	Rh1AG096600 Rh1BG077300 Rh1CG093300 Rh1DG099600 Rh1DG100000
rosa_wichuraiana	Rw1G007480 Rw1G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	381
AccB1I	GGYRCC	1 cut(s)	270
AccB7I	CCANNNNNTGG	1 cut(s)	407
AccII	CGCG	3 cut(s)	51, 177, 624
AciI	CCGC	6 cut(s)	175, 456, 624, 681, 753, 854
AclI	AACGTT	1 cut(s)	698
AclWI	GGATC	3 cut(s)	449, 773, 786
AcsI	RAATTY	1 cut(s)	686
AcuI	CTGAAG	2 cut(s)	239, 668
AcyI	GRCGYC	1 cut(s)	378
AfaI	GTAC	3 cut(s)	387, 1168, 1273
AfiI	CCNNNNNNNGG	4 cut(s)	20, 153, 194, 407
AgsI	TTSAA	6 cut(s)	143, 392, 822, 849, 887, 1292
AjnI	CCWGG	3 cut(s)	466, 596, 1072
AluBI	AGCT	3 cut(s)	185, 267, 938
AluI	AGCT	3 cut(s)	185, 267, 938
Alw26I	GTCTC	1 cut(s)	707
AlwI	GGATC	3 cut(s)	449, 773, 786
AoxI	GGCC	4 cut(s)	155, 398, 453, 903
ApoI	RAATTY	1 cut(s)	686
AseI	ATTAAT	1 cut(s)	1052
AspS9I	GGNCC	5 cut(s)	155, 453, 831, 1070, 1127
AsuC2I	CCSGG	2 cut(s)	21, 131
AsuHPI	GGTGA	2 cut(s)	22, 648
AvaII	GGWCC	3 cut(s)	831, 1070, 1127
BamHI	GGATCC	1 cut(s)	778
BanI	GGYRCC	1 cut(s)	270
BccI	CCATC	8 cut(s)	77, 225, 686, 779, 865, 974, 1019, 1262
BceAI	ACGGC	2 cut(s)	332, 918
BciT130I	CCWGG	3 cut(s)	468, 598, 1074
BciVI	GTATCC	1 cut(s)	1092
BcnI	CCSGG	2 cut(s)	21, 131
BcoDI	GTCTC	1 cut(s)	707
BfaI	CTAG	3 cut(s)	320, 629, 750
BfmI	CTRYAG	1 cut(s)	1092
BfuI	GTATCC	1 cut(s)	1092
BglII	AGATCT	1 cut(s)	488
BisI	GCNGC	3 cut(s)	456, 754, 854
BlsI	GCNGC	3 cut(s)	457, 755, 855
Bme1390I	CCNGG	5 cut(s)	21, 131, 468, 598, 1074
Bme18I	GGWCC	3 cut(s)	831, 1070, 1127
BmgT120I	GGNCC	5 cut(s)	155, 453, 831, 1070, 1127
BmiI	GGNNCC	6 cut(s)	88, 135, 272, 346, 780, 832
BmrFI	CCNGG	5 cut(s)	21, 131, 468, 598, 1074
BmsI	GCATC	6 cut(s)	488, 737, 779, 856, 934, 1055
BpmI	CTGGAG	2 cut(s)	505, 619
BpuMI	CCSGG	2 cut(s)	21, 131
BsaBI	GATNNNNATC	1 cut(s)	1010
BsaHI	GRCGYC	1 cut(s)	378
BsaJI	CCNNGG	2 cut(s)	466, 1073
BsaWI	WCCGGW	1 cut(s)	241
BsaXI	ACNNNNNCTCC	2 cut(s)	662, 692
Bsc4I	CCNNNNNNNGG	4 cut(s)	20, 153, 194, 407
Bse1I	ACTGG	1 cut(s)	667
Bse3DI	GCAATG	1 cut(s)	1130
Bse8I	GATNNNNATC	1 cut(s)	1010
BseBI	CCWGG	3 cut(s)	468, 598, 1074
BseDI	CCNNGG	2 cut(s)	466, 1073
BseGI	GGATG	4 cut(s)	85, 217, 871, 949
BseJI	GATNNNNATC	1 cut(s)	1010
BseLI	CCNNNNNNNGG	4 cut(s)	20, 153, 194, 407
BseMI	GCAATG	1 cut(s)	1130
BseNI	ACTGG	1 cut(s)	667
BseRI	GAGGAG	1 cut(s)	1023
BsgI	GTGCAG	1 cut(s)	573
Bsh1236I	CGCG	3 cut(s)	51, 177, 624
BshFI	GGCC	4 cut(s)	157, 400, 455, 905
BshNI	GGYRCC	1 cut(s)	270
BsiSI	CCGG	3 cut(s)	21, 131, 242
BslFI	GGGAC	2 cut(s)	210, 622
BslI	CCNNNNNNNGG	4 cut(s)	20, 153, 194, 407
BsmAI	GTCTC	1 cut(s)	707
BsmFI	GGGAC	2 cut(s)	210, 622
BsnI	GGCC	4 cut(s)	157, 400, 455, 905
Bsp1407I	TGTACA	1 cut(s)	1271
Bsp143I	GATC	4 cut(s)	250, 441, 488, 778
Bsp68I	TCGCGA	1 cut(s)	51
BspACI	CCGC	6 cut(s)	175, 456, 624, 681, 753, 854
BspANI	GGCC	4 cut(s)	157, 400, 455, 905
BspFNI	CGCG	3 cut(s)	51, 177, 624
BspLI	GGNNCC	6 cut(s)	88, 135, 272, 346, 780, 832
BspPI	GGATC	3 cut(s)	449, 773, 786
BspT107I	GGYRCC	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	1130
BsrGI	TGTACA	1 cut(s)	1271
BsrI	ACTGG	1 cut(s)	667
BssECI	CCNNGG	2 cut(s)	466, 1073
BssMI	GATC	4 cut(s)	250, 441, 488, 778
BssNI	GRCGYC	1 cut(s)	378
Bst2UI	CCWGG	3 cut(s)	468, 598, 1074
Bst4CI	ACNGT	3 cut(s)	34, 917, 1261
BstACI	GRCGYC	1 cut(s)	378
BstAUI	TGTACA	1 cut(s)	1271
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	1 cut(s)	1202
BstEII	GGTNACC	1 cut(s)	654
BstF5I	GGATG	4 cut(s)	85, 217, 871, 949
BstFNI	CGCG	3 cut(s)	51, 177, 624
BstKTI	GATC	4 cut(s)	253, 444, 491, 781
BstMAI	GTCTC	1 cut(s)	707
BstMBI	GATC	4 cut(s)	250, 441, 488, 778
BstMWI	GCNNNNNNNGC	1 cut(s)	944
BstNI	CCWGG	3 cut(s)	468, 598, 1074
BstNSI	RCATGY	1 cut(s)	432
BstPI	GGTNACC	1 cut(s)	654
BstSCI	CCNGG	5 cut(s)	19, 129, 466, 596, 1072
BstSFI	CTRYAG	1 cut(s)	1092
BstUI	CGCG	3 cut(s)	51, 177, 624
BstX2I	RGATCY	3 cut(s)	441, 488, 778
BstYI	RGATCY	3 cut(s)	441, 488, 778
BsuI	GTATCC	1 cut(s)	1092
BsuRI	GGCC	4 cut(s)	157, 400, 455, 905
BtgZI	GCGATG	1 cut(s)	999
BtsCI	GGATG	4 cut(s)	85, 217, 871, 949
BtsI	GCAGTG	2 cut(s)	478, 1159
BtsIMutI	CAGTG	2 cut(s)	478, 1159
BtuMI	TCGCGA	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	269
Cfr13I	GGNCC	5 cut(s)	155, 453, 831, 1070, 1127
CseI	GACGC	2 cut(s)	424, 630
Csp6I	GTAC	3 cut(s)	386, 1167, 1272
CviAII	CATG	6 cut(s)	227, 429, 723, 738, 774, 1109
CviQI	GTAC	3 cut(s)	386, 1167, 1272
DdeI	CTNAG	1 cut(s)	1202
DpnI	GATC	4 cut(s)	252, 443, 490, 780
DpnII	GATC	4 cut(s)	250, 441, 488, 778
DraI	TTTAAA	1 cut(s)	976
Eco47I	GGWCC	3 cut(s)	831, 1070, 1127
Eco57I	CTGAAG	2 cut(s)	239, 668
Eco91I	GGTNACC	1 cut(s)	654
EcoO109I	RGGNCCY	1 cut(s)	1070
EcoO65I	GGTNACC	1 cut(s)	654
EcoRII	CCWGG	3 cut(s)	466, 596, 1072
FaeI	CATG	6 cut(s)	230, 432, 726, 741, 777, 1112
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FaqI	GGGAC	2 cut(s)	210, 622
FatI	CATG	6 cut(s)	226, 428, 722, 737, 773, 1108
Fnu4HI	GCNGC	3 cut(s)	456, 754, 854
FokI	GGATG	4 cut(s)	92, 204, 878, 956
Fsp4HI	GCNGC	3 cut(s)	456, 754, 854
FspBI	CTAG	3 cut(s)	320, 629, 750
GluI	GCNGC	3 cut(s)	456, 754, 854
GsuI	CTGGAG	2 cut(s)	505, 619
HaeIII	GGCC	4 cut(s)	157, 400, 455, 905
HapII	CCGG	3 cut(s)	21, 131, 242
HgaI	GACGC	2 cut(s)	424, 630
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	6 cut(s)	230, 432, 726, 741, 777, 1112
HinfI	GANTC	8 cut(s)	109, 166, 198, 338, 365, 534, 734, 1030
HpaII	CCGG	3 cut(s)	21, 131, 242
HphI	GGTGA	2 cut(s)	22, 648
Hpy166II	GTNNAC	2 cut(s)	70, 232
Hpy188I	TCNGA	8 cut(s)	79, 148, 539, 733, 1005, 1067, 1179, 1234
Hpy8I	GTNNAC	2 cut(s)	70, 232
Hpy99I	CGWCG	1 cut(s)	624
HpyAV	CCTTC	3 cut(s)	514, 817, 1020
HpyCH4III	ACNGT	3 cut(s)	34, 917, 1261
HpyCH4IV	ACGT	3 cut(s)	378, 698, 1193
HpyCH4V	TGCA	7 cut(s)	352, 447, 479, 590, 869, 1046, 1247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	944
HpyF3I	CTNAG	1 cut(s)	1202
HpySE526I	ACGT	3 cut(s)	378, 698, 1193
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	6 cut(s)	230, 432, 726, 741, 777, 1112
Kzo9I	GATC	4 cut(s)	250, 441, 488, 778
LmnI	GCTCC	5 cut(s)	86, 190, 344, 767, 1149
LweI	GCATC	6 cut(s)	488, 737, 779, 856, 934, 1055
MaeI	CTAG	3 cut(s)	320, 629, 750
MaeII	ACGT	3 cut(s)	378, 698, 1193
MaeIII	GTNAC	2 cut(s)	237, 654
MalI	GATC	4 cut(s)	252, 443, 490, 780
MboI	GATC	4 cut(s)	250, 441, 488, 778
MboII	GAAGA	6 cut(s)	245, 492, 551, 810, 943, 1189
MflI	RGATCY	3 cut(s)	441, 488, 778
MluCI	AATT	4 cut(s)	686, 1053, 1216, 1287
MlyI	GAGTC	3 cut(s)	175, 192, 1024
MmeI	TCCRAC	1 cut(s)	1127
MseI	TTAA	5 cut(s)	908, 975, 1052, 1119, 1300
MslI	CAYNNNNRTG	2 cut(s)	641, 1262
MspI	CCGG	3 cut(s)	21, 131, 242
MspR9I	CCNGG	5 cut(s)	21, 131, 468, 598, 1074
MvaI	CCWGG	3 cut(s)	468, 598, 1074
MvnI	CGCG	3 cut(s)	51, 177, 624
MwoI	GCNNNNNNNGC	1 cut(s)	944
NciI	CCSGG	2 cut(s)	21, 131
NdeII	GATC	4 cut(s)	250, 441, 488, 778
NlaIII	CATG	6 cut(s)	230, 432, 726, 741, 777, 1112
NlaIV	GGNNCC	6 cut(s)	88, 135, 272, 346, 780, 832
NmuCI	GTSAC	1 cut(s)	654
NruI	TCGCGA	1 cut(s)	51
NspI	RCATGY	1 cut(s)	432
PfeI	GAWTC	5 cut(s)	109, 338, 365, 534, 734
PflMI	CCANNNNNTGG	1 cut(s)	407
PfoI	TCCNGGA	1 cut(s)	596
PkrI	GCNGC	3 cut(s)	457, 755, 855
PleI	GAGTC	3 cut(s)	174, 192, 1024
PpsI	GAGTC	3 cut(s)	174, 192, 1024
PpuMI	RGGWCCY	1 cut(s)	1070
PshBI	ATTAAT	1 cut(s)	1052
Psp1406I	AACGTT	1 cut(s)	698
Psp5II	RGGWCCY	1 cut(s)	1070
Psp6I	CCWGG	3 cut(s)	466, 596, 1072
PspEI	GGTNACC	1 cut(s)	654
PspGI	CCWGG	3 cut(s)	466, 596, 1072
PspN4I	GGNNCC	6 cut(s)	88, 135, 272, 346, 780, 832
PspPI	GGNCC	5 cut(s)	155, 453, 831, 1070, 1127
PspPPI	RGGWCCY	1 cut(s)	1070
PsuI	RGATCY	3 cut(s)	441, 488, 778
RruI	TCGCGA	1 cut(s)	51
RsaI	GTAC	3 cut(s)	387, 1168, 1273
RsaNI	GTAC	3 cut(s)	386, 1167, 1272
RseI	CAYNNNNRTG	2 cut(s)	641, 1262
SaqAI	TTAA	5 cut(s)	908, 975, 1052, 1119, 1300
SatI	GCNGC	3 cut(s)	456, 754, 854
Sau3AI	GATC	4 cut(s)	250, 441, 488, 778
Sau96I	GGNCC	5 cut(s)	155, 453, 831, 1070, 1127
SchI	GAGTC	3 cut(s)	175, 192, 1024
ScrFI	CCNGG	5 cut(s)	21, 131, 468, 598, 1074
SfaNI	GCATC	6 cut(s)	488, 737, 779, 856, 934, 1055
SfcI	CTRYAG	1 cut(s)	1092
SinI	GGWCC	3 cut(s)	831, 1070, 1127
SmiMI	CAYNNNNRTG	2 cut(s)	641, 1262
Sse9I	AATT	4 cut(s)	686, 1053, 1216, 1287
SsiI	CCGC	6 cut(s)	175, 456, 624, 681, 753, 854
SspI	AATATT	1 cut(s)	1295
SspMI	CTAG	3 cut(s)	320, 629, 750
StyD4I	CCNGG	5 cut(s)	19, 129, 466, 596, 1072
TaaI	ACNGT	3 cut(s)	34, 917, 1261
TaiI	ACGT	3 cut(s)	381, 701, 1196
TaqI	TCGA	2 cut(s)	325, 619
TasI	AATT	4 cut(s)	686, 1053, 1216, 1287
TatI	WGTACW	1 cut(s)	1271
TauI	GCSGC	3 cut(s)	458, 756, 856
TfiI	GAWTC	5 cut(s)	109, 338, 365, 534, 734
Tru1I	TTAA	5 cut(s)	908, 975, 1052, 1119, 1300
Tru9I	TTAA	5 cut(s)	908, 975, 1052, 1119, 1300
TscAI	CASTG	2 cut(s)	478, 1159
TseFI	GTSAC	1 cut(s)	654
Tsp45I	GTSAC	1 cut(s)	654
TspDTI	ATGAA	2 cut(s)	378, 1092
TspRI	CASTG	2 cut(s)	478, 1159
Van91I	CCANNNNNTGG	1 cut(s)	407
VpaK11BI	GGWCC	3 cut(s)	831, 1070, 1127
VspI	ATTAAT	1 cut(s)	1052
XapI	RAATTY	1 cut(s)	686
XceI	RCATGY	1 cut(s)	432
XspI	CTAG	3 cut(s)	320, 629, 750
ZraI	GACGTC	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.