Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005614

Physical Location & Seq

Genomic Coordinates Reverse (-)

15787748 .. 15794013

Gene Structure 6266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G007480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGCCTTGCTTTCCCCAACCCGGTTGCTTCACCGTTTGCGAAATCAATCGCGACCTAATCACTTCTGTAAACCTCTCGGATGATGGAGCCAAAGAAACTTATGGAAAGATTCTGGGAATGACATTCAGCCCGGTTCCATTTCAATCCGAAGTTGGGCCTCCACCGAGTCCGGACCGCGAAACAGCTCCCACAAAGGGACTCCTACAAAGCCTATTCCATCCTAACCATGTGAACTTGTTACCGGAAGTTGATCTTCAGGGATTGAGCTGGCACCCACATAAACACATTATAGCATTTATATCTGGCTCAAATCAAGTTCTAGTTCGAGATTACGAGGATTCAGGAGCCGTGCATTTGGCTAATGAATCGCAGAAAGACGTCAAGGTACTTGAATGGAGGCCAAATGGTGGGAGGACGCTTTCTGTGGCATGTAGTGGTGGGATCTGCATTTGGGCCGCTTCTTTCCCTGGCAGTGTTGCATCTGTGAGATCTGGTGCTTCTTCCTTCTTGGGAACTCTCTCCAGAGGTTCTGGAATCCGATATACTTTGGTGGATTTTCTTCGCAGTCATAACGAGGAACAGATTACTGCACTCCTGGAGGATTGGGACACCTATTCGACGCGGCTAGGTGGCATATCAATGCTGAAGTGGTCACCAACTGGCGATTACTTTTTCTCCGCAAAATTTGATGGAACGTTTTATCTTTGGGAGACAAACACATGGGCATCTGAATCATGGTCATCAACTAGCGGCTTTGTAAAGGGAGCATCATGGGATCCTGATGGGCGTATGATACTTCTTGCCTTCTCTAAATCTTCAACTTTGGGGTCCATTCACTTTGCTTCAAAGCCGCCATCTCTGGATGCACACCTATTACCTGTTGAACTACCAGAGATTACGGCCTTAACAAACAGTAGAGACGACCATTTCCAACTTCAGGGCATTGAGAAGATAGCTTGGGATGCTTCGGGAGAGCGATTGGCTGTATCTTTTAAAGATGGCGATGAGTTGTATAGAGGTCTGATTGCCATCTATGATGTTAGAAGGACTCCTCTTATCTCTGCATCATTAATTGGATTTATCAGAGGACCTGGGGAGTTCCAAAGCCTATACAGTGGATTTTGCTGTACCTATCCTCTGATATTTCGTTCCCACGTTCTTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003008 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006810 GO:0006913 GO:0007610 GO:0007611 GO:0007612 GO:0008150 GO:0009566 GO:0012505 GO:0015630 GO:0016020 GO:0019953 GO:0022414 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046907 GO:0050877 GO:0050890 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

388

Amino Acids

42.62

Weight (kDa)

5.56

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_IFT140_1st	PF23383	83 - 159	2.2e-07	IFT140 first beta-propeller
Beta-prop_Aladin	PF25460	85 - 163	3.1e-11	Aladin seven-bladed propeller
Beta-prop_Aladin	PF25460	209 - 366	6.3e-24	Aladin seven-bladed propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56900
fragaria_vesca	FvH4_7g04320 FvH4_7g04320 FvH4_7g04320 FvH4_7g04320
malus_domestica	MD12G1112000.v1.1 MD14G1101000.v1.1 MD14G1101100.v1.1
prunus_persica	Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1 Prupe.7G021600_v2.0.a1
pyrus_communis	pycom12g09160 pycom14g08800
rosa_chinensis	RchiOBHm_Chr1g0329271 RchiOBHm_Chr1g0329281
rosa_laevigata	RLG00000029905
rosa_multiflora	Rmu_co8376675.1_g000001 Rmu_sc0000203.1_g000006 Rmu_sc0010272.1_g000001
rosa_rugosa	Rorug01G0077700
rosa_samantha	Rh1AG096600 Rh1BG077300 Rh1CG093300 Rh1DG099600 Rh1DG100000
rosa_wichuraiana	Rw1G007480 Rw1G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	381
AccB1I	GGYRCC	1 cut(s)	270
AccB7I	CCANNNNNTGG	1 cut(s)	407
AccII	CGCG	3 cut(s)	51, 177, 622
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	6 cut(s)	175, 456, 622, 678, 750, 851
AclI	AACGTT	1 cut(s)	695
AclWI	GGATC	3 cut(s)	449, 770, 783
AcsI	RAATTY	1 cut(s)	683
AcuI	CTGAAG	3 cut(s)	239, 665, 920
AcyI	GRCGYC	1 cut(s)	378
AfaI	GTAC	2 cut(s)	387, 1129
AfiI	CCNNNNNNNGG	5 cut(s)	20, 153, 194, 407, 937
AgsI	TTSAA	5 cut(s)	143, 392, 819, 846, 884
AjnI	CCWGG	3 cut(s)	466, 594, 1090
AluBI	AGCT	3 cut(s)	185, 267, 956
AluI	AGCT	3 cut(s)	185, 267, 956
Alw26I	GTCTC	2 cut(s)	704, 912
AlwI	GGATC	3 cut(s)	449, 770, 783
Aor13HI	TCCGGA	1 cut(s)	169
AoxI	GGCC	4 cut(s)	155, 398, 453, 900
ApoI	RAATTY	1 cut(s)	683
AseI	ATTAAT	1 cut(s)	1070
AspS9I	GGNCC	5 cut(s)	155, 172, 453, 828, 1088
AsuC2I	CCSGG	2 cut(s)	21, 131
AsuHPI	GGTGA	2 cut(s)	22, 645
AvaII	GGWCC	3 cut(s)	172, 828, 1088
BamHI	GGATCC	1 cut(s)	775
BanI	GGYRCC	1 cut(s)	270
BccI	CCATC	7 cut(s)	77, 225, 683, 776, 862, 992, 1037
BceAI	ACGGC	2 cut(s)	332, 915
BciT130I	CCWGG	3 cut(s)	468, 596, 1092
BcnI	CCSGG	2 cut(s)	21, 131
BcoDI	GTCTC	2 cut(s)	704, 912
BfaI	CTAG	3 cut(s)	320, 626, 747
BglII	AGATCT	1 cut(s)	488
BisI	GCNGC	4 cut(s)	456, 623, 751, 851
BlsI	GCNGC	4 cut(s)	457, 624, 752, 852
Bme1390I	CCNGG	5 cut(s)	21, 131, 468, 596, 1092
Bme18I	GGWCC	3 cut(s)	172, 828, 1088
BmgT120I	GGNCC	5 cut(s)	155, 172, 453, 828, 1088
BmiI	GGNNCC	6 cut(s)	88, 135, 272, 346, 777, 829
BmrFI	CCNGG	5 cut(s)	21, 131, 468, 596, 1092
BmsI	GCATC	6 cut(s)	488, 734, 776, 853, 952, 1073
BpmI	CTGGAG	2 cut(s)	505, 617
BpuMI	CCSGG	2 cut(s)	21, 131
BsaBI	GATNNNNATC	1 cut(s)	1028
BsaHI	GRCGYC	1 cut(s)	378
BsaJI	CCNNGG	2 cut(s)	466, 1091
BsaWI	WCCGGW	2 cut(s)	169, 241
BsaXI	ACNNNNNCTCC	2 cut(s)	659, 689
Bsc4I	CCNNNNNNNGG	5 cut(s)	20, 153, 194, 407, 937
Bse1I	ACTGG	1 cut(s)	664
Bse8I	GATNNNNATC	1 cut(s)	1028
BseAI	TCCGGA	1 cut(s)	169
BseBI	CCWGG	3 cut(s)	468, 596, 1092
BseDI	CCNNGG	2 cut(s)	466, 1091
BseGI	GGATG	4 cut(s)	85, 217, 868, 967
BseJI	GATNNNNATC	1 cut(s)	1028
BseLI	CCNNNNNNNGG	5 cut(s)	20, 153, 194, 407, 937
BseNI	ACTGG	1 cut(s)	664
BseRI	GAGGAG	1 cut(s)	1041
BsgI	GTGCAG	1 cut(s)	573
Bsh1236I	CGCG	3 cut(s)	51, 177, 622
BshFI	GGCC	4 cut(s)	157, 400, 455, 902
BshNI	GGYRCC	1 cut(s)	270
BsiSI	CCGG	4 cut(s)	21, 131, 170, 242
BslFI	GGGAC	2 cut(s)	210, 620
BslI	CCNNNNNNNGG	5 cut(s)	20, 153, 194, 407, 937
BsmAI	GTCTC	2 cut(s)	704, 912
BsmBI	CGTCTC	1 cut(s)	912
BsmFI	GGGAC	2 cut(s)	210, 620
BsnI	GGCC	4 cut(s)	157, 400, 455, 902
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	4 cut(s)	250, 441, 488, 775
Bsp68I	TCGCGA	1 cut(s)	51
BspACI	CCGC	6 cut(s)	175, 456, 622, 678, 750, 851
BspANI	GGCC	4 cut(s)	157, 400, 455, 902
BspEI	TCCGGA	1 cut(s)	169
BspFNI	CGCG	3 cut(s)	51, 177, 622
BspLI	GGNNCC	6 cut(s)	88, 135, 272, 346, 777, 829
BspPI	GGATC	3 cut(s)	449, 770, 783
BspT107I	GGYRCC	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	664
BssECI	CCNNGG	2 cut(s)	466, 1091
BssMI	GATC	4 cut(s)	250, 441, 488, 775
BssNI	GRCGYC	1 cut(s)	378
Bst2UI	CCWGG	3 cut(s)	468, 596, 1092
Bst4CI	ACNGT	3 cut(s)	34, 914, 1115
BstACI	GRCGYC	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	1 cut(s)	1164
BstEII	GGTNACC	1 cut(s)	651
BstF5I	GGATG	4 cut(s)	85, 217, 868, 967
BstFNI	CGCG	3 cut(s)	51, 177, 622
BstKTI	GATC	4 cut(s)	253, 444, 491, 778
BstMAI	GTCTC	2 cut(s)	704, 912
BstMBI	GATC	4 cut(s)	250, 441, 488, 775
BstMWI	GCNNNNNNNGC	1 cut(s)	962
BstNI	CCWGG	3 cut(s)	468, 596, 1092
BstNSI	RCATGY	1 cut(s)	432
BstPI	GGTNACC	1 cut(s)	651
BstSCI	CCNGG	5 cut(s)	19, 129, 466, 594, 1090
BstUI	CGCG	3 cut(s)	51, 177, 622
BstX2I	RGATCY	3 cut(s)	441, 488, 775
BstYI	RGATCY	3 cut(s)	441, 488, 775
BsuRI	GGCC	4 cut(s)	157, 400, 455, 902
BtgZI	GCGATG	1 cut(s)	1017
BtsCI	GGATG	4 cut(s)	85, 217, 868, 967
BtsI	GCAGTG	1 cut(s)	478
BtsIMutI	CAGTG	2 cut(s)	478, 1120
BtuMI	TCGCGA	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	269
Cfr13I	GGNCC	5 cut(s)	155, 172, 453, 828, 1088
CpoI	CGGWCCG	1 cut(s)	172
CseI	GACGC	2 cut(s)	424, 628
Csp6I	GTAC	2 cut(s)	386, 1128
CspI	CGGWCCG	1 cut(s)	172
CviAII	CATG	5 cut(s)	227, 429, 720, 735, 771
CviQI	GTAC	2 cut(s)	386, 1128
DdeI	CTNAG	1 cut(s)	1164
DpnI	GATC	4 cut(s)	252, 443, 490, 777
DpnII	GATC	4 cut(s)	250, 441, 488, 775
DraI	TTTAAA	1 cut(s)	994
Eco47I	GGWCC	3 cut(s)	172, 828, 1088
Eco57I	CTGAAG	3 cut(s)	239, 665, 920
Eco91I	GGTNACC	1 cut(s)	651
EcoO109I	RGGNCCY	1 cut(s)	1088
EcoO65I	GGTNACC	1 cut(s)	651
EcoRII	CCWGG	3 cut(s)	466, 594, 1090
Esp3I	CGTCTC	1 cut(s)	912
FaeI	CATG	5 cut(s)	230, 432, 723, 738, 774
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FaqI	GGGAC	2 cut(s)	210, 620
FatI	CATG	5 cut(s)	226, 428, 719, 734, 770
Fnu4HI	GCNGC	4 cut(s)	456, 623, 751, 851
FokI	GGATG	4 cut(s)	92, 204, 875, 974
Fsp4HI	GCNGC	4 cut(s)	456, 623, 751, 851
FspBI	CTAG	3 cut(s)	320, 626, 747
GluI	GCNGC	4 cut(s)	456, 623, 751, 851
GsuI	CTGGAG	2 cut(s)	505, 617
HaeIII	GGCC	4 cut(s)	157, 400, 455, 902
HapII	CCGG	4 cut(s)	21, 131, 170, 242
HgaI	GACGC	2 cut(s)	424, 628
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	5 cut(s)	230, 432, 723, 738, 774
HinfI	GANTC	8 cut(s)	109, 166, 198, 338, 365, 534, 731, 1048
HpaII	CCGG	4 cut(s)	21, 131, 170, 242
HphI	GGTGA	2 cut(s)	22, 645
Hpy166II	GTNNAC	2 cut(s)	70, 232
Hpy188I	TCNGA	7 cut(s)	79, 148, 539, 730, 1023, 1085, 1140
Hpy188III	TCNNGA	9 cut(s)	50, 170, 326, 342, 522, 531, 779, 860, 969
Hpy8I	GTNNAC	2 cut(s)	70, 232
Hpy99I	CGWCG	1 cut(s)	622
HpyAV	CCTTC	3 cut(s)	514, 814, 1038
HpyCH4III	ACNGT	3 cut(s)	34, 914, 1115
HpyCH4IV	ACGT	3 cut(s)	378, 695, 1155
HpyCH4V	TGCA	6 cut(s)	352, 447, 479, 590, 866, 1064
HpyF10VI	GCNNNNNNNGC	1 cut(s)	962
HpyF3I	CTNAG	1 cut(s)	1164
HpySE526I	ACGT	3 cut(s)	378, 695, 1155
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	5 cut(s)	230, 432, 723, 738, 774
Kpn2I	TCCGGA	1 cut(s)	169
Kzo9I	GATC	4 cut(s)	250, 441, 488, 775
LmnI	GCTCC	4 cut(s)	86, 190, 344, 764
LweI	GCATC	6 cut(s)	488, 734, 776, 853, 952, 1073
MaeI	CTAG	3 cut(s)	320, 626, 747
MaeII	ACGT	3 cut(s)	378, 695, 1155
MaeIII	GTNAC	2 cut(s)	237, 651
MalI	GATC	4 cut(s)	252, 443, 490, 777
MboI	GATC	4 cut(s)	250, 441, 488, 775
MboII	GAAGA	6 cut(s)	245, 492, 551, 807, 961, 1151
MflI	RGATCY	3 cut(s)	441, 488, 775
MluCI	AATT	2 cut(s)	683, 1071
MlyI	GAGTC	3 cut(s)	175, 192, 1042
MmeI	TCCRAC	1 cut(s)	955
MroI	TCCGGA	1 cut(s)	169
MseI	TTAA	3 cut(s)	905, 993, 1070
MslI	CAYNNNNRTG	1 cut(s)	638
MspI	CCGG	4 cut(s)	21, 131, 170, 242
MspR9I	CCNGG	5 cut(s)	21, 131, 468, 596, 1092
MvaI	CCWGG	3 cut(s)	468, 596, 1092
MvnI	CGCG	3 cut(s)	51, 177, 622
MwoI	GCNNNNNNNGC	1 cut(s)	962
NciI	CCSGG	2 cut(s)	21, 131
NdeII	GATC	4 cut(s)	250, 441, 488, 775
NlaIII	CATG	5 cut(s)	230, 432, 723, 738, 774
NlaIV	GGNNCC	6 cut(s)	88, 135, 272, 346, 777, 829
NmuCI	GTSAC	1 cut(s)	651
NruI	TCGCGA	1 cut(s)	51
NspI	RCATGY	1 cut(s)	432
PfeI	GAWTC	5 cut(s)	109, 338, 365, 534, 731
PflMI	CCANNNNNTGG	1 cut(s)	407
PfoI	TCCNGGA	1 cut(s)	594
PkrI	GCNGC	4 cut(s)	457, 624, 752, 852
PleI	GAGTC	3 cut(s)	174, 192, 1042
PpsI	GAGTC	3 cut(s)	174, 192, 1042
PpuMI	RGGWCCY	1 cut(s)	1088
PshBI	ATTAAT	1 cut(s)	1070
Psp1406I	AACGTT	1 cut(s)	695
Psp5II	RGGWCCY	1 cut(s)	1088
Psp6I	CCWGG	3 cut(s)	466, 594, 1090
PspEI	GGTNACC	1 cut(s)	651
PspGI	CCWGG	3 cut(s)	466, 594, 1090
PspN4I	GGNNCC	6 cut(s)	88, 135, 272, 346, 777, 829
PspPI	GGNCC	5 cut(s)	155, 172, 453, 828, 1088
PspPPI	RGGWCCY	1 cut(s)	1088
PsuI	RGATCY	3 cut(s)	441, 488, 775
RruI	TCGCGA	1 cut(s)	51
RsaI	GTAC	2 cut(s)	387, 1129
RsaNI	GTAC	2 cut(s)	386, 1128
RseI	CAYNNNNRTG	1 cut(s)	638
Rsr2I	CGGWCCG	1 cut(s)	172
RsrII	CGGWCCG	1 cut(s)	172
SaqAI	TTAA	3 cut(s)	905, 993, 1070
SatI	GCNGC	4 cut(s)	456, 623, 751, 851
Sau3AI	GATC	4 cut(s)	250, 441, 488, 775
Sau96I	GGNCC	5 cut(s)	155, 172, 453, 828, 1088
SchI	GAGTC	3 cut(s)	175, 192, 1042
ScrFI	CCNGG	5 cut(s)	21, 131, 468, 596, 1092
SfaNI	GCATC	6 cut(s)	488, 734, 776, 853, 952, 1073
SinI	GGWCC	3 cut(s)	172, 828, 1088
SmiMI	CAYNNNNRTG	1 cut(s)	638
Sse9I	AATT	2 cut(s)	683, 1071
SsiI	CCGC	6 cut(s)	175, 456, 622, 678, 750, 851
SspMI	CTAG	3 cut(s)	320, 626, 747
StyD4I	CCNGG	5 cut(s)	19, 129, 466, 594, 1090
TaaI	ACNGT	3 cut(s)	34, 914, 1115
TaiI	ACGT	3 cut(s)	381, 698, 1158
TaqI	TCGA	2 cut(s)	325, 617
TasI	AATT	2 cut(s)	683, 1071
TauI	GCSGC	4 cut(s)	458, 625, 753, 853
TfiI	GAWTC	5 cut(s)	109, 338, 365, 534, 731
Tru1I	TTAA	3 cut(s)	905, 993, 1070
Tru9I	TTAA	3 cut(s)	905, 993, 1070
TscAI	CASTG	2 cut(s)	478, 1120
TseFI	GTSAC	1 cut(s)	651
Tsp45I	GTSAC	1 cut(s)	651
TspDTI	ATGAA	1 cut(s)	378
TspRI	CASTG	2 cut(s)	478, 1120
Van91I	CCANNNNNTGG	1 cut(s)	407
VpaK11BI	GGWCC	3 cut(s)	172, 828, 1088
VspI	ATTAAT	1 cut(s)	1070
XapI	RAATTY	1 cut(s)	683
XceI	RCATGY	1 cut(s)	432
XspI	CTAG	3 cut(s)	320, 626, 747
ZraI	GACGTC	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.