Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003617

Physical Location & Seq

Genomic Coordinates Forward (+)

21128396 .. 21131089

Gene Structure 2694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G57090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGATGCTAAGATCGGACAATTCTTTGACTCCGTCGGTACTTTCTTCAGCGGCAGCGATAAGATCCCATGGTGCGACGGAGATGTCATCGCTGGATGTGAAAGAGAGGTTCGAGAGGCCACAGATTCTGGCACTGAAGATCTTAAGAAAGAGTGCTTGATGCGATTGTCATGGGCCCTTGTTCATTCCCGTCAAACGGAAGATGTTCAACGTGGAATAGCCATGCTTGAAGCATCTCTGGAAAGCAGTGCCCCTCCATTGGAGGACCGAGAGAAGCTCTATCTTCTTGCTGTTGGGTATTACAGAAGTGGGAATTACTCAAGGAGCAGGCAGCTCGTGGACCGCTGTATCGAGATGCAAGCTGATTGGAGACAAGCTTTGGTCCTAAAGAAGACCATCGAAGACAAAATCACAAAGGATGGTGTTATAGGGATAGGGATCACGGCTACAGCCTTTGGAGCTGTGGGTCTCATAGCCGGTGGTATCGTAGCAGCGATGTCTCGCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006996 GO:0007005 GO:0007031 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016559 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04137 ko04139 map04137 map04139

Pfam Domains

Protein Families

Fis1_TPR_C Fis1_TPR_N

Protein Analysis

170

Amino Acids

18.7

Weight (kDa)

5.55

Isoelectric Point (pI)

35.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fis1_TPR_N	PF14852	51 - 82	1.7e-11	Fis1 N-terminal tetratricopeptide repeat
Fis1_TPR_C	PF14853	90 - 142	1.8e-22	Fis1 C-terminal tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57090 AT3G57090
fragaria_vesca	FvH4_3g28070 FvH4_3g28070 FvH4_6g25160
malus_domestica	MD03G1168600.v1.1 MD11G1194400.v1.1 MD14G1084200.v1.1
prunus_persica	Prupe.4G258900_v2.0.a1 Prupe.7G043800_v2.0.a1 Prupe.7G043800_v2.0.a1
pyrus_communis	pycom03g12490 pycom11g16310 pycom12g07730 pycom14g07390
rosa_chinensis	RchiOBHm_Chr2g0125041 RchiOBHm_Chr5g0050751
rosa_laevigata	RLG00000018844 RLG00000034729
rosa_multiflora	Rmu_sc0003505.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029970 Rroxscaffold_2G00118290 Rroxscaffold_2G00118740
rosa_rugosa	Rorug02G0255100 Rorug05G0263500
rosa_samantha	Rh2AG313700 Rh2BG322000 Rh2CG304100 Rh2DG340300 Rh5AG335600 Rh5BG345100 Rh5CG373000 Rh5DG358200
rosa_wichuraiana	Rw2G025370 Rw5G031670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
AciI	CCGC	2 cut(s)	51, 343
AclWI	GGATC	2 cut(s)	58, 446
AcuI	CTGAAG	2 cut(s)	31, 156
AfaI	GTAC	1 cut(s)	40
AfiI	CCNNNNNNNGG	2 cut(s)	196, 259
AflII	CTTAAG	1 cut(s)	143
AgsI	TTSAA	2 cut(s)	209, 230
AluBI	AGCT	5 cut(s)	277, 334, 362, 377, 461
AluI	AGCT	5 cut(s)	277, 334, 362, 377, 461
Alw26I	GTCTC	3 cut(s)	364, 473, 504
AlwI	GGATC	2 cut(s)	58, 446
AlwNI	CAGNNNCTG	1 cut(s)	128
AoxI	GGCC	2 cut(s)	117, 174
ApaI	GGGCCC	1 cut(s)	178
ApeKI	GCWGC	3 cut(s)	54, 331, 491
Asp700I	GAANNNNTTC	1 cut(s)	204
AspS9I	GGNCC	5 cut(s)	174, 175, 265, 340, 382
AvaII	GGWCC	3 cut(s)	265, 340, 382
BaeGI	GKGCMC	2 cut(s)	178, 253
BaeI	ACNNNNGTAYC	2 cut(s)	331, 364
BanII	GRGCYC	1 cut(s)	178
BauI	CACGAG	1 cut(s)	335
BbsI	GAAGAC	2 cut(s)	398, 408
BbvI	GCAGC	3 cut(s)	66, 343, 503
BccI	CCATC	2 cut(s)	404, 413
BceAI	ACGGC	1 cut(s)	459
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BcoDI	GTCTC	3 cut(s)	364, 473, 504
BfmI	CTRYAG	1 cut(s)	447
BfrI	CTTAAG	1 cut(s)	143
BglII	AGATCT	1 cut(s)	139
BisI	GCNGC	4 cut(s)	52, 55, 332, 492
BlsI	GCNGC	4 cut(s)	53, 56, 333, 493
Bme18I	GGWCC	3 cut(s)	265, 340, 382
BmgT120I	GGNCC	5 cut(s)	174, 175, 265, 340, 382
BmiI	GGNNCC	1 cut(s)	176
BmsI	GCATC	3 cut(s)	150, 242, 345
BpiI	GAAGAC	2 cut(s)	398, 408
BplI	GAGNNNNNCTC	2 cut(s)	261, 293
BpuEI	CTTGAG	1 cut(s)	304
BsaBI	GATNNNNATC	1 cut(s)	437
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 259
Bse118I	RCCGGY	1 cut(s)	476
Bse8I	GATNNNNATC	1 cut(s)	437
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	3 cut(s)	10, 101, 424
BseJI	GATNNNNATC	1 cut(s)	437
BseLI	CCNNNNNNNGG	2 cut(s)	196, 259
BseSI	GKGCMC	2 cut(s)	178, 253
BseXI	GCAGC	3 cut(s)	66, 343, 503
BshFI	GGCC	2 cut(s)	119, 176
BsiSI	CCGG	1 cut(s)	477
BslI	CCNNNNNNNGG	2 cut(s)	196, 259
BsmAI	GTCTC	3 cut(s)	364, 473, 504
BsnI	GGCC	2 cut(s)	119, 176
Bso31I	GGTCTC	1 cut(s)	473
Bsp120I	GGGCCC	1 cut(s)	174
Bsp1286I	GDGCHC	2 cut(s)	178, 253
Bsp143I	GATC	4 cut(s)	12, 63, 139, 438
Bsp19I	CCATGG	1 cut(s)	68
BspACI	CCGC	2 cut(s)	51, 343
BspANI	GGCC	2 cut(s)	119, 176
BspLI	GGNNCC	1 cut(s)	176
BspPI	GGATC	2 cut(s)	58, 446
BspTI	CTTAAG	1 cut(s)	143
BspTNI	GGTCTC	1 cut(s)	473
BsrFI	RCCGGY	1 cut(s)	476
BssAI	RCCGGY	1 cut(s)	476
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	4 cut(s)	12, 63, 139, 438
BssSI	CACGAG	1 cut(s)	335
BssT1I	CCWWGG	1 cut(s)	68
Bst2BI	CACGAG	1 cut(s)	335
BstAFI	CTTAAG	1 cut(s)	143
BstC8I	GCNNGC	2 cut(s)	329, 360
BstDEI	CTNAG	1 cut(s)	9
BstDSI	CCRYGG	1 cut(s)	68
BstF5I	GGATG	3 cut(s)	10, 101, 424
BstKTI	GATC	4 cut(s)	15, 66, 142, 441
BstMAI	GTCTC	3 cut(s)	364, 473, 504
BstMBI	GATC	4 cut(s)	12, 63, 139, 438
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstSFI	CTRYAG	1 cut(s)	447
BstSLI	GKGCMC	2 cut(s)	178, 253
BstV1I	GCAGC	3 cut(s)	66, 343, 503
BstV2I	GAAGAC	2 cut(s)	398, 408
BstX2I	RGATCY	2 cut(s)	63, 139
BstYI	RGATCY	2 cut(s)	63, 139
BsuRI	GGCC	2 cut(s)	119, 176
BtgI	CCRYGG	1 cut(s)	68
BtgZI	GCGATG	2 cut(s)	73, 509
BtsCI	GGATG	3 cut(s)	10, 101, 424
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	2 cut(s)	132, 253
Cac8I	GCNNGC	2 cut(s)	329, 360
CaiI	CAGNNNCTG	1 cut(s)	128
Cfr10I	RCCGGY	1 cut(s)	476
Cfr13I	GGNCC	5 cut(s)	174, 175, 265, 340, 382
Csp6I	GTAC	1 cut(s)	39
CviAII	CATG	3 cut(s)	69, 171, 223
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	4 cut(s)	14, 65, 141, 440
DpnII	GATC	4 cut(s)	12, 63, 139, 438
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	178
Eco31I	GGTCTC	1 cut(s)	473
Eco47I	GGWCC	3 cut(s)	265, 340, 382
Eco57I	CTGAAG	2 cut(s)	31, 156
EcoO109I	RGGNCCY	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	3 cut(s)	72, 174, 226
FaiI	YATR	5 cut(s)	70, 172, 224, 428, 473
FatI	CATG	3 cut(s)	68, 170, 222
Fnu4HI	GCNGC	4 cut(s)	52, 55, 332, 492
FokI	GGATG	3 cut(s)	17, 108, 431
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	4 cut(s)	52, 55, 332, 492
GluI	GCNGC	4 cut(s)	52, 55, 332, 492
HaeIII	GGCC	2 cut(s)	119, 176
HapII	CCGG	1 cut(s)	477
Hin1II	CATG	3 cut(s)	72, 174, 226
HindIII	AAGCTT	1 cut(s)	375
HinfI	GANTC	2 cut(s)	29, 125
HpaII	CCGG	1 cut(s)	477
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	1 cut(s)	17
Hpy188III	TCNNGA	3 cut(s)	113, 239, 352
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	2 cut(s)	38, 80
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	1 cut(s)	358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpyF3I	CTNAG	1 cut(s)	9
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	3 cut(s)	72, 174, 226
Kzo9I	GATC	4 cut(s)	12, 63, 139, 438
LmnI	GCTCC	2 cut(s)	324, 458
LpnPI	CCDG	5 cut(s)	78, 114, 224, 313, 490
Lsp1109I	GCAGC	3 cut(s)	66, 343, 503
LweI	GCATC	3 cut(s)	150, 242, 345
MaeII	ACGT	1 cut(s)	211
MalI	GATC	4 cut(s)	14, 65, 141, 440
MboI	GATC	4 cut(s)	12, 63, 139, 438
MboII	GAAGA	6 cut(s)	37, 149, 212, 275, 403, 413
MflI	RGATCY	2 cut(s)	63, 139
MhlI	GDGCHC	2 cut(s)	178, 253
MluCI	AATT	2 cut(s)	20, 313
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	4 cut(s)	100, 109, 256, 264
MroXI	GAANNNNTTC	1 cut(s)	204
MseI	TTAA	1 cut(s)	144
MspA1I	CMGCKG	2 cut(s)	51, 345
MspCI	CTTAAG	1 cut(s)	143
MspI	CCGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	1 cut(s)	458
NcoI	CCATGG	1 cut(s)	68
NdeII	GATC	4 cut(s)	12, 63, 139, 438
NlaIII	CATG	3 cut(s)	72, 174, 226
NlaIV	GGNNCC	1 cut(s)	176
PdmI	GAANNNNTTC	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	125
PflFI	GACNNNGTC	1 cut(s)	32
PkrI	GCNGC	4 cut(s)	53, 56, 333, 493
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	176
PspOMI	GGGCCC	1 cut(s)	174
PspPI	GGNCC	5 cut(s)	174, 175, 265, 340, 382
PstNI	CAGNNNCTG	1 cut(s)	128
PsuI	RGATCY	2 cut(s)	63, 139
PsyI	GACNNNGTC	1 cut(s)	32
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	4 cut(s)	52, 55, 332, 492
Sau3AI	GATC	4 cut(s)	12, 63, 139, 438
Sau96I	GGNCC	5 cut(s)	174, 175, 265, 340, 382
SchI	GAGTC	1 cut(s)	23
SduI	GDGCHC	2 cut(s)	178, 253
SetI	ASST	7 cut(s)	111, 214, 279, 336, 364, 379, 463
SfaNI	GCATC	3 cut(s)	150, 242, 345
SfcI	CTRYAG	1 cut(s)	447
SinI	GGWCC	3 cut(s)	265, 340, 382
SmlI	CTYRAG	2 cut(s)	143, 319
SmoI	CTYRAG	2 cut(s)	143, 319
Sse9I	AATT	2 cut(s)	20, 313
SsiI	CCGC	2 cut(s)	51, 343
StyI	CCWWGG	1 cut(s)	68
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	3 cut(s)	112, 351, 399
TaqII	GACCGA	1 cut(s)	282
TasI	AATT	2 cut(s)	20, 313
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	2 cut(s)	139, 253
TseI	GCWGC	3 cut(s)	54, 331, 491
TspDTI	ATGAA	1 cut(s)	173
TspGWI	ACGGA	3 cut(s)	22, 93, 212
TspRI	CASTG	2 cut(s)	139, 253
Tth111I	GACNNNGTC	1 cut(s)	32
Vha464I	CTTAAG	1 cut(s)	143
VpaK11BI	GGWCC	3 cut(s)	265, 340, 382
XmnI	GAANNNNTTC	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.