Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003617

Physical Location & Seq

Genomic Coordinates Reverse (-)

10208709 .. 10211660

Gene Structure 2952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1084200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCAAATTGAGAGTCGACCATTTTTCATCGTTGACAATCTCACAAAAATGGAACAGTTGTTCGACAAGTTCTTCGACTCCGTCGCTAACCTTTTCAGCGGTGGCGGTGGCGATGAGATCCCCTGGTGCGATGGCGACGTCATCCACGGGTGTGAGAAAGAAGTAGCAGAGGCCAACAAGGGTGACTCGGATGAACACAAGAGCGAAAGCATTATGCGGCTGTCATGGGCGCTTGTTCACTCAAGGCAACCGGAAGATGTGCAGCGTGGAATTGCAATGCTTGAAGCTTCATTGGCCAACAGTAGCTCCCCTTTGCATCAAAGAGAGAAGCTTTACCTTCTGGCTGTTGGATACTTCAGAACCGGGGAATATTCAACTTGTCGGCATCTAGTGGAGCAATGCTTAGAGATTGCCCCTGATTGGAGACAGGCTCTGACCCTTAAGAAGACCGTCGAGGATAAAATAGCTAAAGATGGCTTTGTTGGAATTGGCATTACTGCTAGTGCTGTTGGGCTTATAGCAGTTGGGATTATTGCCGCATTGGTTCGTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006996 GO:0007005 GO:0007031 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016559 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04137 ko04139 map04137 map04139

Pfam Domains

Protein Families

Fis1_TPR_C Fis1_TPR_N

Protein Analysis

185

Amino Acids

20.37

Weight (kDa)

5.25

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fis1_TPR_N	PF14852	69 - 100	4e-12	Fis1 N-terminal tetratricopeptide repeat
Fis1_TPR_C	PF14853	108 - 159	3.8e-21	Fis1 C-terminal tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57090 AT3G57090
fragaria_vesca	FvH4_3g28070 FvH4_3g28070 FvH4_6g25160
malus_domestica	MD03G1168600.v1.1 MD11G1194400.v1.1 MD14G1084200.v1.1
prunus_persica	Prupe.4G258900_v2.0.a1 Prupe.7G043800_v2.0.a1 Prupe.7G043800_v2.0.a1
pyrus_communis	pycom03g12490 pycom11g16310 pycom12g07730 pycom14g07390
rosa_chinensis	RchiOBHm_Chr2g0125041 RchiOBHm_Chr5g0050751
rosa_laevigata	RLG00000018844 RLG00000034729
rosa_multiflora	Rmu_sc0003505.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029970 Rroxscaffold_2G00118290 Rroxscaffold_2G00118740
rosa_rugosa	Rorug02G0255100 Rorug05G0263500
rosa_samantha	Rh2AG313700 Rh2BG322000 Rh2CG304100 Rh2DG340300 Rh5AG335600 Rh5BG345100 Rh5CG373000 Rh5DG358200
rosa_wichuraiana	Rw2G025370 Rw5G031670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
AccI	GTMKAC	1 cut(s)	16
AciI	CCGC	4 cut(s)	99, 105, 217, 537
AclWI	GGATC	1 cut(s)	112
AcoI	YGGCCR	1 cut(s)	294
AcuI	CTGAAG	1 cut(s)	340
AcyI	GRCGYC	1 cut(s)	138
AfiI	CCNNNNNNNGG	1 cut(s)	420
AflII	CTTAAG	1 cut(s)	440
AgsI	TTSAA	2 cut(s)	284, 375
AjnI	CCWGG	1 cut(s)	122
AleI	CACNNNNGTG	1 cut(s)	150
AloI	GAACNNNNNNTCC	2 cut(s)	44, 76
AluBI	AGCT	4 cut(s)	287, 306, 331, 467
AluI	AGCT	4 cut(s)	287, 306, 331, 467
Alw26I	GTCTC	1 cut(s)	418
AlwI	GGATC	1 cut(s)	112
AlwNI	CAGNNNCTG	1 cut(s)	433
AoxI	GGCC	2 cut(s)	171, 294
ApeKI	GCWGC	1 cut(s)	262
ArsI	GACNNNNNNTTYG	3 cut(s)	30, 56, 88
AspLEI	GCGC	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	364
AsuHPI	GGTGA	1 cut(s)	194
BalI	TGGCCA	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	452
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	2 cut(s)	125, 467
BciT130I	CCWGG	1 cut(s)	124
BciVI	GTATCC	1 cut(s)	344
BcnI	CCSGG	1 cut(s)	364
BcoDI	GTCTC	1 cut(s)	418
BfaI	CTAG	2 cut(s)	389, 501
BfoI	RGCGCY	1 cut(s)	233
BfrI	CTTAAG	1 cut(s)	440
BfuI	GTATCC	1 cut(s)	344
BisI	GCNGC	3 cut(s)	218, 263, 537
BlsI	GCNGC	3 cut(s)	219, 264, 538
Bme1390I	CCNGG	2 cut(s)	124, 364
BmrFI	CCNGG	2 cut(s)	124, 364
BmsI	GCATC	2 cut(s)	325, 394
BpiI	GAAGAC	1 cut(s)	452
BplI	GAGNNNNNCTC	2 cut(s)	415, 447
BpuEI	CTTGAG	1 cut(s)	226
BpuMI	CCSGG	1 cut(s)	364
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	3 cut(s)	122, 145, 363
BsaWI	WCCGGW	1 cut(s)	250
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bsc4I	CCNNNNNNNGG	1 cut(s)	420
Bse3DI	GCAATG	2 cut(s)	282, 404
BseBI	CCWGG	1 cut(s)	124
BseDI	CCNNGG	3 cut(s)	122, 145, 363
BseGI	GGATG	2 cut(s)	141, 196
BseLI	CCNNNNNNNGG	1 cut(s)	420
BseMI	GCAATG	2 cut(s)	282, 404
BseXI	GCAGC	1 cut(s)	274
BsgI	GTGCAG	1 cut(s)	281
BshFI	GGCC	2 cut(s)	173, 296
BsiSI	CCGG	2 cut(s)	251, 363
BslI	CCNNNNNNNGG	1 cut(s)	420
BsmAI	GTCTC	1 cut(s)	418
BsnI	GGCC	2 cut(s)	173, 296
Bsp143I	GATC	1 cut(s)	117
BspACI	CCGC	4 cut(s)	99, 105, 217, 537
BspANI	GGCC	2 cut(s)	173, 296
BspPI	GGATC	1 cut(s)	112
BspTI	CTTAAG	1 cut(s)	440
BsrDI	GCAATG	2 cut(s)	282, 404
BssECI	CCNNGG	3 cut(s)	122, 145, 363
BssMI	GATC	1 cut(s)	117
BssNI	GRCGYC	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	124
Bst4CI	ACNGT	3 cut(s)	57, 302, 451
BstACI	GRCGYC	1 cut(s)	138
BstAFI	CTTAAG	1 cut(s)	440
BstDEI	CTNAG	1 cut(s)	403
BstDSI	CCRYGG	1 cut(s)	145
BstF5I	GGATG	2 cut(s)	141, 196
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	1 cut(s)	120
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNI	CCWGG	1 cut(s)	124
BstSCI	CCNGG	2 cut(s)	122, 362
BstV1I	GCAGC	1 cut(s)	274
BstV2I	GAAGAC	1 cut(s)	452
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	344
BsuRI	GGCC	2 cut(s)	173, 296
BtgI	CCRYGG	1 cut(s)	145
BtgZI	GCGATG	2 cut(s)	126, 144
BtsCI	GGATG	2 cut(s)	141, 196
CaiI	CAGNNNCTG	1 cut(s)	433
CfoI	GCGC	1 cut(s)	232
CviAII	CATG	1 cut(s)	225
DdeI	CTNAG	1 cut(s)	403
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
EaeI	YGGCCR	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	122
FaeI	CATG	1 cut(s)	228
FaiI	YATR	3 cut(s)	215, 226, 518
FatI	CATG	1 cut(s)	224
FblI	GTMKAC	1 cut(s)	16
Fnu4HI	GCNGC	3 cut(s)	218, 263, 537
FokI	GGATG	2 cut(s)	128, 203
Fsp4HI	GCNGC	3 cut(s)	218, 263, 537
FspBI	CTAG	2 cut(s)	389, 501
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	3 cut(s)	218, 263, 537
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	2 cut(s)	173, 296
HapII	CCGG	2 cut(s)	251, 363
HhaI	GCGC	1 cut(s)	232
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	1 cut(s)	228
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HincII	GTYRAC	2 cut(s)	17, 34
HindII	GTYRAC	2 cut(s)	17, 34
HindIII	AAGCTT	2 cut(s)	285, 329
HinfI	GANTC	3 cut(s)	13, 77, 185
HpaII	CCGG	2 cut(s)	251, 363
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	3 cut(s)	17, 34, 238
Hpy188I	TCNGA	3 cut(s)	190, 359, 435
Hpy8I	GTNNAC	3 cut(s)	17, 34, 238
Hpy99I	CGWCG	3 cut(s)	86, 140, 455
HpyAV	CCTTC	1 cut(s)	347
HpyCH4III	ACNGT	3 cut(s)	57, 302, 451
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	4 cut(s)	4, 262, 275, 316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	1 cut(s)	403
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	228
HspAI	GCGC	1 cut(s)	230
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	2 cut(s)	311, 394
LpnPI	CCDG	7 cut(s)	109, 136, 264, 326, 376, 413, 429
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	2 cut(s)	325, 394
MaeI	CTAG	2 cut(s)	389, 501
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	3 cut(s)	64, 266, 457
MflI	RGATCY	1 cut(s)	117
MlsI	TGGCCA	1 cut(s)	296
MluCI	AATT	3 cut(s)	6, 270, 486
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	3 cut(s)	22, 71, 179
MmeI	TCCRAC	2 cut(s)	328, 463
MnlI	CCTC	2 cut(s)	163, 448
Mox20I	TGGCCA	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	1 cut(s)	441
MslI	CAYNNNNRTG	2 cut(s)	47, 150
Msp20I	TGGCCA	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	99
MspCI	CTTAAG	1 cut(s)	440
MspI	CCGG	2 cut(s)	251, 363
MspR9I	CCNGG	2 cut(s)	124, 364
MvaI	CCWGG	1 cut(s)	124
MwoI	GCNNNNNNNGC	1 cut(s)	293
NciI	CCSGG	1 cut(s)	364
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	182
OliI	CACNNNNGTG	1 cut(s)	150
PflFI	GACNNNGTC	1 cut(s)	80
PkrI	GCNGC	3 cut(s)	219, 264, 538
PleI	GAGTC	3 cut(s)	21, 71, 179
PpsI	GAGTC	3 cut(s)	21, 71, 179
Psp6I	CCWGG	1 cut(s)	122
PspGI	CCWGG	1 cut(s)	122
PstNI	CAGNNNCTG	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	117
PsyI	GACNNNGTC	1 cut(s)	80
RseI	CAYNNNNRTG	2 cut(s)	47, 150
SalI	GTCGAC	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	3 cut(s)	218, 263, 537
Sau3AI	GATC	1 cut(s)	117
SchI	GAGTC	3 cut(s)	22, 71, 179
ScrFI	CCNGG	2 cut(s)	124, 364
SetI	ASST	8 cut(s)	93, 141, 289, 308, 333, 339, 469, 554
SfaNI	GCATC	2 cut(s)	325, 394
SmiMI	CAYNNNNRTG	2 cut(s)	47, 150
SmlI	CTYRAG	2 cut(s)	241, 440
SmoI	CTYRAG	2 cut(s)	241, 440
Sse9I	AATT	3 cut(s)	6, 270, 486
SsiI	CCGC	4 cut(s)	99, 105, 217, 537
SspI	AATATT	1 cut(s)	371
SspMI	CTAG	2 cut(s)	389, 501
StyD4I	CCNGG	2 cut(s)	122, 362
TaaI	ACNGT	3 cut(s)	57, 302, 451
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	4 cut(s)	16, 63, 75, 453
TasI	AATT	3 cut(s)	6, 270, 486
TauI	GCSGC	2 cut(s)	220, 539
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	3 cut(s)	16, 207, 279
TspGWI	ACGGA	1 cut(s)	70
Tth111I	GACNNNGTC	1 cut(s)	80
Vha464I	CTTAAG	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	16
XspI	CTAG	2 cut(s)	389, 501
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.