Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003617

Physical Location & Seq

Genomic Coordinates Forward (+)

21087567 .. 21089994

Gene Structure 2428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g28070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAGGCGAATATTGGGAAATTCTTCGAGTCGGTTGGCAATTTCTTCACTGGTGGCGACCAGATCCCCTGGTGCGAGCGCGACGTCATCGCCGGATGTGAAAGAGAAGTTGCTGAGGCTGAGAAAGGTTCCGAGTTGTTCAAAGAATGTCTCATGCGTCTGTCATGGTCTCTTGTTCATTCAAGGCATCCAGAAGATGTGCTACGTGGAATAGCAATGCTTGAAGCTTCTGTGAGTGATGCTAATAGCACCCCTCTGCAATTGAGAGAGACTATTTATCTTCTTGCTGTTGGGTATTACCGAAGTGGTGACTATTCTAAGAGTAGGGAACTTGTTGAACAGTGTTTAATGATTGCACCTGCCTGGAGACAGGCGCTGACCCTTAAGAAAATGAATGAAGACCGGATCAAAAGAGATGGTGCGATAGGGATAGGAATTGCTGCAACTGCTGTTGGACTGATTGCTGGTGGAATTGCTGCAGCCGTGGCTCGGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006996 GO:0007031 GO:0008150 GO:0009987 GO:0016043 GO:0016559 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04137 ko04139 map04137 map04139

Pfam Domains

Protein Families

Fis1_TPR_C Fis1_TPR_N

Protein Analysis

167

Amino Acids

18.22

Weight (kDa)

6.16

Isoelectric Point (pI)

31.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fis1_TPR_N	PF14852	49 - 80	3.9e-09	Fis1 N-terminal tetratricopeptide repeat
Fis1_TPR_C	PF14853	89 - 140	2.2e-19	Fis1 C-terminal tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57090 AT3G57090
fragaria_vesca	FvH4_3g28070 FvH4_3g28070 FvH4_6g25160
malus_domestica	MD03G1168600.v1.1 MD11G1194400.v1.1 MD14G1084200.v1.1
prunus_persica	Prupe.4G258900_v2.0.a1 Prupe.7G043800_v2.0.a1 Prupe.7G043800_v2.0.a1
pyrus_communis	pycom03g12490 pycom11g16310 pycom12g07730 pycom14g07390
rosa_chinensis	RchiOBHm_Chr2g0125041 RchiOBHm_Chr5g0050751
rosa_laevigata	RLG00000018844 RLG00000034729
rosa_multiflora	Rmu_sc0003505.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029970 Rroxscaffold_2G00118290 Rroxscaffold_2G00118740
rosa_rugosa	Rorug02G0255100 Rorug05G0263500
rosa_samantha	Rh2AG313700 Rh2BG322000 Rh2CG304100 Rh2DG340300 Rh5AG335600 Rh5BG345100 Rh5CG373000 Rh5DG358200
rosa_wichuraiana	Rw2G025370 Rw5G031670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	367
AatII	GACGTC	1 cut(s)	87
Acc36I	ACCTGC	1 cut(s)	367
AccII	CGCG	1 cut(s)	81
AclWI	GGATC	2 cut(s)	58, 413
AcsI	RAATTY	1 cut(s)	20
AcyI	GRCGYC	1 cut(s)	84
AfiI	CCNNNNNNNGG	1 cut(s)	489
AflII	CTTAAG	1 cut(s)	383
AgsI	TTSAA	4 cut(s)	142, 183, 224, 338
AjnI	CCWGG	2 cut(s)	68, 362
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
Alw26I	GTCTC	4 cut(s)	155, 174, 263, 361
AlwI	GGATC	2 cut(s)	58, 413
AlwNI	CAGNNNCTG	1 cut(s)	376
ApeKI	GCWGC	3 cut(s)	440, 476, 479
ApoI	RAATTY	1 cut(s)	20
Asp700I	GAANNNNTTC	1 cut(s)	23
AspLEI	GCGC	2 cut(s)	81, 376
AsuHPI	GGTGA	1 cut(s)	320
BarI	GAAGNNNNNNTAC	2 cut(s)	186, 218
BbsI	GAAGAC	1 cut(s)	405
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	3 cut(s)	427, 463, 491
BccI	CCATC	1 cut(s)	410
BceAI	ACGGC	1 cut(s)	467
BciT130I	CCWGG	2 cut(s)	70, 364
BcoDI	GTCTC	4 cut(s)	155, 174, 263, 361
BfmI	CTRYAG	1 cut(s)	477
BfoI	RGCGCY	1 cut(s)	377
BfrI	CTTAAG	1 cut(s)	383
BfuAI	ACCTGC	1 cut(s)	367
BisI	GCNGC	3 cut(s)	441, 477, 480
BlsI	GCNGC	3 cut(s)	442, 478, 481
Bme1390I	CCNGG	2 cut(s)	70, 364
BmiI	GGNNCC	1 cut(s)	130
BmrFI	CCNGG	2 cut(s)	70, 364
BmsI	GCATC	2 cut(s)	196, 229
BpiI	GAAGAC	1 cut(s)	405
BpmI	CTGGAG	1 cut(s)	385
Bpu10I	CCTNAGC	1 cut(s)	114
BsaAI	YACGTR	1 cut(s)	206
BsaHI	GRCGYC	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	68, 483
BsaWI	WCCGGW	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	1 cut(s)	489
Bse1I	ACTGG	1 cut(s)	55
Bse3DI	GCAATG	1 cut(s)	222
BseBI	CCWGG	2 cut(s)	70, 364
BseDI	CCNNGG	2 cut(s)	68, 483
BseGI	GGATG	2 cut(s)	101, 187
BseLI	CCNNNNNNNGG	1 cut(s)	489
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	2 cut(s)	105, 111
BseNI	ACTGG	1 cut(s)	55
BseXI	GCAGC	3 cut(s)	427, 463, 491
Bsh1236I	CGCG	1 cut(s)	81
BsiSI	CCGG	2 cut(s)	93, 403
BslI	CCNNNNNNNGG	1 cut(s)	489
BsmAI	GTCTC	4 cut(s)	155, 174, 263, 361
Bso31I	GGTCTC	1 cut(s)	174
Bsp143I	GATC	2 cut(s)	63, 405
BspCNI	CTCAG	2 cut(s)	106, 112
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	130
BspMAI	CTGCAG	1 cut(s)	481
BspMI	ACCTGC	1 cut(s)	367
BspPI	GGATC	2 cut(s)	58, 413
BspTI	CTTAAG	1 cut(s)	383
BspTNI	GGTCTC	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	2 cut(s)	68, 483
BssMI	GATC	2 cut(s)	63, 405
BssNI	GRCGYC	1 cut(s)	84
Bst2UI	CCWGG	2 cut(s)	70, 364
Bst4CI	ACNGT	1 cut(s)	342
BstACI	GRCGYC	1 cut(s)	84
BstAFI	CTTAAG	1 cut(s)	383
BstBAI	YACGTR	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	3 cut(s)	114, 120, 318
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	2 cut(s)	101, 187
BstFNI	CGCG	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	377
BstHHI	GCGC	2 cut(s)	81, 376
BstKTI	GATC	2 cut(s)	66, 408
BstMAI	GTCTC	4 cut(s)	155, 174, 263, 361
BstMBI	GATC	2 cut(s)	63, 405
BstMWI	GCNNNNNNNGC	2 cut(s)	446, 485
BstNI	CCWGG	2 cut(s)	70, 364
BstSCI	CCNGG	2 cut(s)	68, 362
BstSFI	CTRYAG	1 cut(s)	477
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	3 cut(s)	427, 463, 491
BstV2I	GAAGAC	1 cut(s)	405
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
BtgI	CCRYGG	1 cut(s)	483
BtgZI	GCGATG	1 cut(s)	73
BtsCI	GGATG	2 cut(s)	101, 187
BtsIMutI	CAGTG	2 cut(s)	48, 347
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	77
CaiI	CAGNNNCTG	1 cut(s)	376
CfoI	GCGC	2 cut(s)	81, 376
CseI	GACGC	1 cut(s)	146
CviAII	CATG	2 cut(s)	154, 165
CviJI	RGCY	4 cut(s)	119, 227, 482, 488
CviKI_1	RGCY	4 cut(s)	119, 227, 482, 488
DdeI	CTNAG	3 cut(s)	114, 120, 318
DpnI	GATC	2 cut(s)	65, 407
DpnII	GATC	2 cut(s)	63, 405
Eco31I	GGTCTC	1 cut(s)	174
EcoRII	CCWGG	2 cut(s)	68, 362
FaeI	CATG	2 cut(s)	157, 168
FaiI	YATR	2 cut(s)	155, 166
FatI	CATG	2 cut(s)	153, 164
Fnu4HI	GCNGC	3 cut(s)	441, 477, 480
FokI	GGATG	2 cut(s)	108, 174
Fsp4HI	GCNGC	3 cut(s)	441, 477, 480
GlaI	GCGC	2 cut(s)	80, 375
GluI	GCNGC	3 cut(s)	441, 477, 480
GsuI	CTGGAG	1 cut(s)	385
HaeII	RGCGCY	1 cut(s)	377
HapII	CCGG	2 cut(s)	93, 403
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	2 cut(s)	81, 376
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	157, 168
Hin6I	GCGC	2 cut(s)	79, 374
HinP1I	GCGC	2 cut(s)	79, 374
HindIII	AAGCTT	1 cut(s)	225
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	2 cut(s)	93, 403
HphI	GGTGA	1 cut(s)	320
Hpy188I	TCNGA	2 cut(s)	133, 492
Hpy188III	TCNNGA	1 cut(s)	191
Hpy99I	CGWCG	1 cut(s)	86
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4IV	ACGT	2 cut(s)	84, 205
HpyCH4V	TGCA	4 cut(s)	259, 356, 443, 479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	446, 485
HpyF3I	CTNAG	3 cut(s)	114, 120, 318
HpySE526I	ACGT	2 cut(s)	84, 205
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	157, 168
HspAI	GCGC	2 cut(s)	79, 374
Kzo9I	GATC	2 cut(s)	63, 405
Lsp1109I	GCAGC	3 cut(s)	427, 463, 491
LweI	GCATC	2 cut(s)	196, 229
MaeII	ACGT	2 cut(s)	84, 205
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	2 cut(s)	65, 407
MboI	GATC	2 cut(s)	63, 405
MboII	GAAGA	5 cut(s)	16, 37, 206, 272, 410
MfeI	CAATTG	1 cut(s)	260
MflI	RGATCY	1 cut(s)	63
MluCI	AATT	5 cut(s)	20, 40, 260, 435, 471
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	2 cut(s)	109, 264
MroXI	GAANNNNTTC	1 cut(s)	23
MseI	TTAA	2 cut(s)	347, 384
MspCI	CTTAAG	1 cut(s)	383
MspI	CCGG	2 cut(s)	93, 403
MspR9I	CCNGG	2 cut(s)	70, 364
MunI	CAATTG	1 cut(s)	260
MvaI	CCWGG	2 cut(s)	70, 364
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	446, 485
NdeII	GATC	2 cut(s)	63, 405
NlaIII	CATG	2 cut(s)	157, 168
NlaIV	GGNNCC	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	308
PaqCI	CACCTGC	1 cut(s)	367
PdmI	GAANNNNTTC	1 cut(s)	23
PkrI	GCNGC	3 cut(s)	442, 478, 481
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
Ppu21I	YACGTR	1 cut(s)	206
Psp6I	CCWGG	2 cut(s)	68, 362
PspGI	CCWGG	2 cut(s)	68, 362
PspN4I	GGNNCC	1 cut(s)	130
PstI	CTGCAG	1 cut(s)	481
PstNI	CAGNNNCTG	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	63
SaqAI	TTAA	2 cut(s)	347, 384
SatI	GCNGC	3 cut(s)	441, 477, 480
Sau3AI	GATC	2 cut(s)	63, 405
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	2 cut(s)	70, 364
SetI	ASST	5 cut(s)	87, 130, 208, 229, 361
SfaNI	GCATC	2 cut(s)	196, 229
SfcI	CTRYAG	1 cut(s)	477
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	5 cut(s)	20, 40, 260, 435, 471
SspI	AATATT	1 cut(s)	13
StyD4I	CCNGG	2 cut(s)	68, 362
TaaI	ACNGT	1 cut(s)	342
TaiI	ACGT	2 cut(s)	87, 208
TaqI	TCGA	1 cut(s)	27
TasI	AATT	5 cut(s)	20, 40, 260, 435, 471
Tru1I	TTAA	2 cut(s)	347, 384
Tru9I	TTAA	2 cut(s)	347, 384
TscAI	CASTG	2 cut(s)	55, 347
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	3 cut(s)	440, 476, 479
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	3 cut(s)	167, 407, 411
TspRI	CASTG	2 cut(s)	55, 347
Vha464I	CTTAAG	1 cut(s)	383
XapI	RAATTY	1 cut(s)	20
XmnI	GAANNNNTTC	1 cut(s)	23
ZraI	GACGTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.