Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003617

Physical Location & Seq

Genomic Coordinates Reverse (-)

8342092 .. 8347147

Gene Structure 5056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g07730.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAACAGTTATTCAACAAGTTCTTCGATTCCGTCTCTAACCTTTTCAGCGGCAGCGATGAGATCCCCTGGTGCGATCGCGACGTCATCCACGGGTGCGAGAAAGAAGTAGCAGAAGCCAACAAGGGTGACTCAGATGAACACAAGAGCGAAAGCATAATGAGGTTGTCATGGGCGCTTGTTCACTCAAGGCAACCTGAAGATGTGCAGCGTGGAATTGCAATGCTTGAAGCTTCATTGGCCAACGGTAGCTCCCCTTTGCATCAAAGAGAGAAGCTTTACCTTCTGGCTGTTGGATACTTCAGAACCGGGGAATATTCAAATTGCCGGCATCTAGTGAAGCAATGTTTAGAGATTGCCCCTGATTGGAGACAGGCTCTGACCCTTAAGAAGACCGTTGAGGATAAAATAGCCAAAGATGGCTTTGTGGGAATAGGCATTACTGCTAGTGCTGTTGGGCTTATAGCAGCTGGGATTGTTGCAGCGTTGGTTCGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006996 GO:0007005 GO:0007031 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016559 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04137 ko04139 map04137 map04139

Pfam Domains

Protein Families

Fis1_TPR_C Fis1_TPR_N

Protein Analysis

167

Amino Acids

18.42

Weight (kDa)

5.96

Isoelectric Point (pI)

31.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57090 AT3G57090
fragaria_vesca	FvH4_3g28070 FvH4_3g28070 FvH4_6g25160
malus_domestica	MD03G1168600.v1.1 MD11G1194400.v1.1 MD14G1084200.v1.1
prunus_persica	Prupe.4G258900_v2.0.a1 Prupe.7G043800_v2.0.a1 Prupe.7G043800_v2.0.a1
pyrus_communis	pycom03g12490 pycom11g16310 pycom12g07730 pycom14g07390
rosa_chinensis	RchiOBHm_Chr2g0125041 RchiOBHm_Chr5g0050751
rosa_laevigata	RLG00000018844 RLG00000034729
rosa_multiflora	Rmu_sc0003505.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029970 Rroxscaffold_2G00118290 Rroxscaffold_2G00118740
rosa_rugosa	Rorug02G0255100 Rorug05G0263500
rosa_samantha	Rh2AG313700 Rh2BG322000 Rh2CG304100 Rh2DG340300 Rh5AG335600 Rh5BG345100 Rh5CG373000 Rh5DG358200
rosa_wichuraiana	Rw2G025370 Rw5G031670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	486
AatII	GACGTC	1 cut(s)	87
Acc36I	ACCTGC	1 cut(s)	486
AccII	CGCG	1 cut(s)	81
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	1 cut(s)	58
AcoI	YGGCCR	1 cut(s)	240
AcuI	CTGAAG	2 cut(s)	219, 286
AcyI	GRCGYC	1 cut(s)	84
AfiI	CCNNNNNNNGG	1 cut(s)	366
AflII	CTTAAG	1 cut(s)	386
AgsI	TTSAA	3 cut(s)	16, 230, 321
AjnI	CCWGG	1 cut(s)	68
AluBI	AGCT	4 cut(s)	233, 252, 277, 470
AluI	AGCT	4 cut(s)	233, 252, 277, 470
Alw26I	GTCTC	2 cut(s)	40, 364
AlwI	GGATC	1 cut(s)	58
AlwNI	CAGNNNCTG	1 cut(s)	379
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	4 cut(s)	54, 208, 467, 482
AsiSI	GCGATCGC	1 cut(s)	79
AspLEI	GCGC	1 cut(s)	178
AsuC2I	CCSGG	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	140
BalI	TGGCCA	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	398
BbvI	GCAGC	4 cut(s)	66, 220, 479, 494
BccI	CCATC	1 cut(s)	413
BciT130I	CCWGG	1 cut(s)	70
BciVI	GTATCC	1 cut(s)	290
BcnI	CCSGG	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	40, 364
BfaI	CTAG	2 cut(s)	335, 447
BfoI	RGCGCY	1 cut(s)	179
BfrI	CTTAAG	1 cut(s)	386
BfuAI	ACCTGC	1 cut(s)	486
BfuI	GTATCC	1 cut(s)	290
BisI	GCNGC	5 cut(s)	52, 55, 209, 468, 483
BlsI	GCNGC	5 cut(s)	53, 56, 210, 469, 484
Bme1390I	CCNGG	2 cut(s)	70, 310
BmrFI	CCNGG	2 cut(s)	70, 310
BmsI	GCATC	2 cut(s)	271, 340
BpiI	GAAGAC	1 cut(s)	398
BplI	GAGNNNNNCTC	2 cut(s)	361, 393
BpuEI	CTTGAG	1 cut(s)	172
BpuMI	CCSGG	1 cut(s)	310
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	68, 91, 309
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	366
Bse118I	RCCGGY	1 cut(s)	327
Bse3DI	GCAATG	2 cut(s)	228, 350
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	3 cut(s)	68, 91, 309
BseGI	GGATG	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	366
BseMI	GCAATG	2 cut(s)	228, 350
BseMII	CTCAG	1 cut(s)	147
BseXI	GCAGC	4 cut(s)	66, 220, 479, 494
BseYI	CCCAGC	1 cut(s)	470
BsgI	GTGCAG	1 cut(s)	227
Bsh1236I	CGCG	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	1 cut(s)	242
BsiEI	CGRYCG	1 cut(s)	79
BsiSI	CCGG	2 cut(s)	309, 328
BslI	CCNNNNNNNGG	1 cut(s)	366
BsmAI	GTCTC	2 cut(s)	40, 364
BsmBI	CGTCTC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	242
Bsp143I	GATC	2 cut(s)	63, 76
Bsp68I	TCGCGA	1 cut(s)	81
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	81
BspMI	ACCTGC	1 cut(s)	486
BspPI	GGATC	1 cut(s)	58
BspTI	CTTAAG	1 cut(s)	386
BsrDI	GCAATG	2 cut(s)	228, 350
BsrFI	RCCGGY	1 cut(s)	327
BssAI	RCCGGY	1 cut(s)	327
BssECI	CCNNGG	3 cut(s)	68, 91, 309
BssMI	GATC	2 cut(s)	63, 76
BssNI	GRCGYC	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	3 cut(s)	9, 248, 397
BstACI	GRCGYC	1 cut(s)	84
BstAFI	CTTAAG	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	329
BstDEI	CTNAG	1 cut(s)	133
BstDSI	CCRYGG	1 cut(s)	91
BstF5I	GGATG	1 cut(s)	87
BstFNI	CGCG	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	2 cut(s)	66, 79
BstMAI	GTCTC	2 cut(s)	40, 364
BstMBI	GATC	2 cut(s)	63, 76
BstMCI	CGRYCG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	1 cut(s)	70
BstSCI	CCNGG	2 cut(s)	68, 308
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	4 cut(s)	66, 220, 479, 494
BstV2I	GAAGAC	1 cut(s)	398
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
BsuI	GTATCC	1 cut(s)	290
BsuRI	GGCC	1 cut(s)	242
BtgI	CCRYGG	1 cut(s)	91
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	87
BtuMI	TCGCGA	1 cut(s)	81
BveI	ACCTGC	1 cut(s)	486
Cac8I	GCNNGC	1 cut(s)	329
CaiI	CAGNNNCTG	1 cut(s)	379
CfoI	GCGC	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	327
CviAII	CATG	1 cut(s)	171
DdeI	CTNAG	1 cut(s)	133
DpnI	GATC	2 cut(s)	65, 78
DpnII	GATC	2 cut(s)	63, 76
EaeI	YGGCCR	1 cut(s)	240
Eco57I	CTGAAG	2 cut(s)	219, 286
EcoRII	CCWGG	1 cut(s)	68
Esp3I	CGTCTC	1 cut(s)	40
FaeI	CATG	1 cut(s)	174
FaiI	YATR	3 cut(s)	158, 172, 464
FatI	CATG	1 cut(s)	170
Fnu4HI	GCNGC	5 cut(s)	52, 55, 209, 468, 483
FokI	GGATG	1 cut(s)	74
Fsp4HI	GCNGC	5 cut(s)	52, 55, 209, 468, 483
FspBI	CTAG	2 cut(s)	335, 447
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	5 cut(s)	52, 55, 209, 468, 483
GsaI	CCCAGC	1 cut(s)	474
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	2 cut(s)	309, 328
HhaI	GCGC	1 cut(s)	178
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	174
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HindIII	AAGCTT	2 cut(s)	231, 275
HinfI	GANTC	2 cut(s)	29, 131
HpaII	CCGG	2 cut(s)	309, 328
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	3 cut(s)	136, 305, 381
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	3 cut(s)	9, 248, 397
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	4 cut(s)	208, 221, 262, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	1 cut(s)	133
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	1 cut(s)	174
HspAI	GCGC	1 cut(s)	176
KroI	GCCGGC	1 cut(s)	327
KroNI	GCCGGC	1 cut(s)	329
Kzo9I	GATC	2 cut(s)	63, 76
LmnI	GCTCC	1 cut(s)	257
Lsp1109I	GCAGC	4 cut(s)	66, 220, 479, 494
LweI	GCATC	2 cut(s)	271, 340
MaeI	CTAG	2 cut(s)	335, 447
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	2 cut(s)	65, 78
MboI	GATC	2 cut(s)	63, 76
MboII	GAAGA	3 cut(s)	16, 212, 403
MflI	RGATCY	1 cut(s)	63
MlsI	TGGCCA	1 cut(s)	242
MluCI	AATT	2 cut(s)	216, 322
MluNI	TGGCCA	1 cut(s)	242
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	2 cut(s)	156, 394
Mox20I	TGGCCA	1 cut(s)	242
MroNI	GCCGGC	1 cut(s)	327
MscI	TGGCCA	1 cut(s)	242
MseI	TTAA	1 cut(s)	387
Msp20I	TGGCCA	1 cut(s)	242
MspA1I	CMGCKG	2 cut(s)	51, 470
MspCI	CTTAAG	1 cut(s)	386
MspI	CCGG	2 cut(s)	309, 328
MspR9I	CCNGG	2 cut(s)	70, 310
MvaI	CCWGG	1 cut(s)	70
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	239
NaeI	GCCGGC	1 cut(s)	329
NciI	CCSGG	1 cut(s)	310
NdeII	GATC	2 cut(s)	63, 76
NgoMIV	GCCGGC	1 cut(s)	327
NlaIII	CATG	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	128
NruI	TCGCGA	1 cut(s)	81
PaqCI	CACCTGC	1 cut(s)	486
PdiI	GCCGGC	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	5 cut(s)	53, 56, 210, 469, 484
Ple19I	CGATCG	1 cut(s)	79
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	68
PspFI	CCCAGC	1 cut(s)	470
PspGI	CCWGG	1 cut(s)	68
PstNI	CAGNNNCTG	1 cut(s)	379
PsuI	RGATCY	1 cut(s)	63
PvuI	CGATCG	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	470
RgaI	GCGATCGC	1 cut(s)	79
RruI	TCGCGA	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	5 cut(s)	52, 55, 209, 468, 483
Sau3AI	GATC	2 cut(s)	63, 76
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	70, 310
SfaAI	GCGATCGC	1 cut(s)	79
SfaNI	GCATC	2 cut(s)	271, 340
SgfI	GCGATCGC	1 cut(s)	79
SmlI	CTYRAG	2 cut(s)	187, 386
SmoI	CTYRAG	2 cut(s)	187, 386
Sse9I	AATT	2 cut(s)	216, 322
SsiI	CCGC	1 cut(s)	51
SspI	AATATT	1 cut(s)	317
SspMI	CTAG	2 cut(s)	335, 447
StyD4I	CCNGG	2 cut(s)	68, 308
TaaI	ACNGT	3 cut(s)	9, 248, 397
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	1 cut(s)	27
TasI	AATT	2 cut(s)	216, 322
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	4 cut(s)	54, 208, 467, 482
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	2 cut(s)	153, 225
TspGWI	ACGGA	1 cut(s)	22
Vha464I	CTTAAG	1 cut(s)	386
XspI	CTAG	2 cut(s)	335, 447
ZraI	GACGTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.