Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003617

Physical Location & Seq

Genomic Coordinates Forward (+)

50554140 .. 50557337

Gene Structure 3198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00118740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGAAGAGATGATGAACAAGTTTTTCGAGTCCGTGGGTTCGTTCTTCGGCGGAGGAGATCAGATCCCGTGGTGCGATCGAGACGTCATCCTCGGTTGTGAGAGAGAAGTCGCAGAGGCGAACAAAGGTGACTCAGAGGAGCACAAGAGCGAAAGCATAATGAGGTTGTCATGGGCTCTTGTTCACTCAAGGCAACCTGAAGATGTGCAGCGTGGAATAGCCATGCTTGAAGCTTCATTGGCCAACACTAACTCCCCTTTGCATCAAAGAGAGAAGCTTTACCTTCTGGCCTTAGGATACTACAGAACTGATGACTATTCAAAAAGCCGTAATCTTCTCGATCAATGCTTAGAGTTTCTGAATGATATTCAGTCTAGCTTTGATTGCTCTGTTACATGGAAGGTCAATGCCCTCCCAATATCAAATTGTTCTTCTGGTTCTTTGGTCATTGCACCTGATTGGAGGCAGGCTCTGTCCCTTAAGAAGATAGTTGAGGATCAAATTGCTAAAGATGGCTTTATTGGAATAGGCCTCACTGCTAGTGCTATTGGACTTATAGCAGGTGGGATTGTTGCTGCCTTGGTTCGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006996 GO:0007005 GO:0007031 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016559 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04137 ko04139 map04137 map04139

Pfam Domains

Protein Families

Fis1_TPR_C Fis1_TPR_N

Protein Analysis

197

Amino Acids

21.82

Weight (kDa)

5.01

Isoelectric Point (pI)

35.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fis1_TPR_N	PF14852	51 - 82	5.6e-12	Fis1 N-terminal tetratricopeptide repeat
Fis1_TPR_C	PF14853	90 - 118	1.8e-08	Fis1 C-terminal tetratricopeptide repeat
Fis1_TPR_C	PF14853	148 - 172	3.9e-06	Fis1 C-terminal tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57090 AT3G57090
fragaria_vesca	FvH4_3g28070 FvH4_3g28070 FvH4_6g25160
malus_domestica	MD03G1168600.v1.1 MD11G1194400.v1.1 MD14G1084200.v1.1
prunus_persica	Prupe.4G258900_v2.0.a1 Prupe.7G043800_v2.0.a1 Prupe.7G043800_v2.0.a1
pyrus_communis	pycom03g12490 pycom11g16310 pycom12g07730 pycom14g07390
rosa_chinensis	RchiOBHm_Chr2g0125041 RchiOBHm_Chr5g0050751
rosa_laevigata	RLG00000018844 RLG00000034729
rosa_multiflora	Rmu_sc0003505.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029970 Rroxscaffold_2G00118290 Rroxscaffold_2G00118740
rosa_rugosa	Rorug02G0255100 Rorug05G0263500
rosa_samantha	Rh2AG313700 Rh2BG322000 Rh2CG304100 Rh2DG340300 Rh5AG335600 Rh5BG345100 Rh5CG373000 Rh5DG358200
rosa_wichuraiana	Rw2G025370 Rw5G031670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	551, 579
AatII	GACGTC	1 cut(s)	87
Acc36I	ACCTGC	2 cut(s)	551, 579
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	2 cut(s)	58, 504
AcoI	YGGCCR	1 cut(s)	240
AcuI	CTGAAG	1 cut(s)	219
AcyI	GRCGYC	1 cut(s)	84
AflII	CTTAAG	1 cut(s)	479
AgsI	TTSAA	2 cut(s)	230, 321
AluBI	AGCT	3 cut(s)	233, 277, 378
AluI	AGCT	3 cut(s)	233, 277, 378
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	2 cut(s)	58, 504
AlwNI	CAGNNNCTG	1 cut(s)	472
AoxI	GGCC	3 cut(s)	240, 288, 529
ApeKI	GCWGC	2 cut(s)	208, 575
AsuHPI	GGTGA	1 cut(s)	140
AxyI	CCTNAGG	1 cut(s)	292
BalI	TGGCCA	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	220, 562
BccI	CCATC	1 cut(s)	506
BceAI	ACGGC	1 cut(s)	312
BciVI	GTATCC	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	2 cut(s)	375, 540
BfmI	CTRYAG	1 cut(s)	301
BfrI	CTTAAG	1 cut(s)	479
BfuAI	ACCTGC	2 cut(s)	551, 579
BfuI	GTATCC	1 cut(s)	290
BisI	GCNGC	2 cut(s)	209, 576
BlsI	GCNGC	2 cut(s)	210, 577
BmsI	GCATC	1 cut(s)	271
BplI	GAGNNNNNCTC	2 cut(s)	454, 486
BpuEI	CTTGAG	1 cut(s)	172
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	4 cut(s)	33, 68, 91, 579
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bse21I	CCTNAGG	1 cut(s)	292
Bse3DI	GCAATG	1 cut(s)	447
BseDI	CCNNGG	4 cut(s)	33, 68, 91, 579
BseGI	GGATG	1 cut(s)	87
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	1 cut(s)	147
BseRI	GAGGAG	2 cut(s)	69, 152
BseXI	GCAGC	2 cut(s)	220, 562
BsgI	GTGCAG	1 cut(s)	227
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	3 cut(s)	242, 290, 531
BsiEI	CGRYCG	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	460
BsmAI	GTCTC	1 cut(s)	75
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	460
BsnI	GGCC	3 cut(s)	242, 290, 531
Bsp1286I	GDGCHC	2 cut(s)	144, 178
Bsp143I	GATC	5 cut(s)	58, 63, 76, 340, 496
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	3 cut(s)	242, 290, 531
BspCNI	CTCAG	1 cut(s)	146
BspMI	ACCTGC	2 cut(s)	551, 579
BspPI	GGATC	2 cut(s)	58, 504
BspTI	CTTAAG	1 cut(s)	479
BsrDI	GCAATG	1 cut(s)	447
BssECI	CCNNGG	4 cut(s)	33, 68, 91, 579
BssMI	GATC	5 cut(s)	58, 63, 76, 340, 496
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	579
BstACI	GRCGYC	1 cut(s)	84
BstAFI	CTTAAG	1 cut(s)	479
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	3 cut(s)	133, 292, 349
BstDSI	CCRYGG	2 cut(s)	33, 68
BstF5I	GGATG	1 cut(s)	87
BstKTI	GATC	5 cut(s)	61, 66, 79, 343, 499
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	5 cut(s)	58, 63, 76, 340, 496
BstMCI	CGRYCG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 384
BstSFI	CTRYAG	1 cut(s)	301
BstV1I	GCAGC	2 cut(s)	220, 562
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
Bsu36I	CCTNAGG	1 cut(s)	292
BsuI	GTATCC	1 cut(s)	290
BsuRI	GGCC	3 cut(s)	242, 290, 531
BtgI	CCRYGG	2 cut(s)	33, 68
BtsCI	GGATG	1 cut(s)	87
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	1 cut(s)	534
BveI	ACCTGC	2 cut(s)	551, 579
Cac8I	GCNNGC	1 cut(s)	468
CaiI	CAGNNNCTG	1 cut(s)	472
CviAII	CATG	3 cut(s)	171, 223, 396
DdeI	CTNAG	3 cut(s)	133, 292, 349
DpnI	GATC	5 cut(s)	60, 65, 78, 342, 498
DpnII	GATC	5 cut(s)	58, 63, 76, 340, 496
EaeI	YGGCCR	1 cut(s)	240
EciI	GGCGGA	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	579
Eco147I	AGGCCT	1 cut(s)	531
Eco24I	GRGCYC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	219
Eco81I	CCTNAGG	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	579
EcoT38I	GRGCYC	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	579
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	3 cut(s)	174, 226, 399
FaiI	YATR	5 cut(s)	158, 172, 224, 397, 557
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	3 cut(s)	170, 222, 395
Fnu4HI	GCNGC	2 cut(s)	209, 576
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	2 cut(s)	209, 576
FspBI	CTAG	2 cut(s)	375, 540
GluI	GCNGC	2 cut(s)	209, 576
HaeIII	GGCC	3 cut(s)	242, 290, 531
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	3 cut(s)	174, 226, 399
HindIII	AAGCTT	2 cut(s)	231, 275
HinfI	GANTC	2 cut(s)	29, 131
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	3 cut(s)	63, 136, 360
Hpy188III	TCNNGA	2 cut(s)	80, 338
Hpy8I	GTNNAC	1 cut(s)	184
HpyAV	CCTTC	2 cut(s)	293, 394
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	3 cut(s)	208, 262, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 384
HpyF3I	CTNAG	3 cut(s)	133, 292, 349
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	3 cut(s)	174, 226, 399
Kzo9I	GATC	5 cut(s)	58, 63, 76, 340, 496
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	7 cut(s)	210, 272, 420, 452, 468, 546, 574
Lsp1109I	GCAGC	2 cut(s)	220, 562
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	2 cut(s)	375, 540
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	128, 391
MalI	GATC	5 cut(s)	60, 65, 78, 342, 498
MboI	GATC	5 cut(s)	58, 63, 76, 340, 496
MboII	GAAGA	6 cut(s)	17, 37, 212, 326, 423, 496
MflI	RGATCY	1 cut(s)	63
MhlI	GDGCHC	2 cut(s)	144, 178
MlsI	TGGCCA	1 cut(s)	242
MluCI	AATT	2 cut(s)	424, 501
MluNI	TGGCCA	1 cut(s)	242
MlyI	GAGTC	2 cut(s)	38, 125
MnlI	CCTC	9 cut(s)	47, 101, 109, 130, 156, 422, 456, 487, 542
Mox20I	TGGCCA	1 cut(s)	242
MscI	TGGCCA	1 cut(s)	242
MseI	TTAA	1 cut(s)	480
Msp20I	TGGCCA	1 cut(s)	242
MspCI	CTTAAG	1 cut(s)	479
MwoI	GCNNNNNNNGC	2 cut(s)	239, 384
NdeII	GATC	5 cut(s)	58, 63, 76, 340, 496
NlaIII	CATG	3 cut(s)	174, 226, 399
NmuCI	GTSAC	1 cut(s)	128
PaqCI	CACCTGC	2 cut(s)	551, 579
PceI	AGGCCT	1 cut(s)	531
PkrI	GCNGC	2 cut(s)	210, 577
Ple19I	CGATCG	1 cut(s)	79
PleI	GAGTC	2 cut(s)	37, 125
PpsI	GAGTC	2 cut(s)	37, 125
PstNI	CAGNNNCTG	1 cut(s)	472
PsuI	RGATCY	1 cut(s)	63
PvuI	CGATCG	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	2 cut(s)	209, 576
Sau3AI	GATC	5 cut(s)	58, 63, 76, 340, 496
SchI	GAGTC	2 cut(s)	38, 125
SduI	GDGCHC	2 cut(s)	144, 178
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	1 cut(s)	301
SmlI	CTYRAG	2 cut(s)	187, 479
SmoI	CTYRAG	2 cut(s)	187, 479
Sse9I	AATT	2 cut(s)	424, 501
SseBI	AGGCCT	1 cut(s)	531
SsiI	CCGC	1 cut(s)	51
SspMI	CTAG	2 cut(s)	375, 540
StuI	AGGCCT	1 cut(s)	531
StyI	CCWWGG	1 cut(s)	579
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	3 cut(s)	27, 79, 339
TasI	AATT	2 cut(s)	424, 501
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	1 cut(s)	541
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	2 cut(s)	208, 575
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	2 cut(s)	29, 225
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	1 cut(s)	541
Vha464I	CTTAAG	1 cut(s)	479
XspI	CTAG	2 cut(s)	375, 540
ZraI	GACGTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.