Rroxscaffold_2G00118290

Component of the peroxisomal and mitochondrial division machineries. Plays a role in promoting the fission of mitochondria and peroxisomes

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
49613206 .. 49616526
3321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00118290.1

Sequence Viewer

Length: 582 bp
ATGGAAGAGATGATGAACAAGTTTTTCGAGTCCGTGGGTTCGTTCTTCGGCGGAGGAGATCAGATCCCGTGGTGCGATCGAGACGTCATCCTCGGTTGTGAGAGAGAAGTCGCAGAGGCGAACAAAGGTGACTCAGAGGAGCACAAGAGCGAAAGCATAATGAGGTTGTCATGGGCTCTTGTTCACTCAAGGCAACCTGAAGATGTGCAGCGTGGAATAGCCATGCTTGAAGCTTCATTGGCCAACACTAACTCCCCTTTGCATCAAAGAGAGAAGCTTTACCTTCTGGCCTTAGGATACTACAGAACTGATGACTATTCAAAAAGCCGTAATCTTCTCGATCAATGCTTAGAGGTGCTTGATCAGGTTGTGGCTGACTACTTGTTTGATGGTTGTTCTAGCAAGCCTTCCTGCGAAATGTTTTTCCTCCAACTTATTGCACCTGATTGGAGGCAGGCTCTGTCCCTTAAGAAGATAGTTGAGGATCAAATTGCTAAAGATGGCTTTATTGGAATAGGCCTCACTGCTAGTGCTATTGGACTTATAGCAGGTGGGATTGTTGCTGCCTTGGTTCGCAGGTGA

Protein Analysis

193

Amino Acids

21.54

Weight (kDa)

4.85

Isoelectric Point (pI)

36.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fis1_TPR_N PF14852 51 - 82 5.4e-12 Fis1 N-terminal tetratricopeptide repeat
Fis1_TPR_C PF14853 90 - 119 9.4e-09 Fis1 C-terminal tetratricopeptide repeat
Fis1_TPR_C PF14853 146 - 168 7.6e-06 Fis1 C-terminal tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 539, 567
AatII GACGTC 1 cut(s) 87
Acc36I ACCTGC 2 cut(s) 539, 567
AciI CCGC 1 cut(s) 51
AclWI GGATC 2 cut(s) 58, 492
AcoI YGGCCR 1 cut(s) 240
AcuI CTGAAG 1 cut(s) 219
AcyI GRCGYC 1 cut(s) 84
AflII CTTAAG 1 cut(s) 467
AgsI TTSAA 2 cut(s) 230, 321
AluBI AGCT 2 cut(s) 233, 277
AluI AGCT 2 cut(s) 233, 277
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 2 cut(s) 58, 492
AlwNI CAGNNNCTG 1 cut(s) 460
AoxI GGCC 3 cut(s) 240, 288, 517
ApeKI GCWGC 2 cut(s) 208, 563
ArsI GACNNNNNNTTYG 2 cut(s) 368, 400
AsuHPI GGTGA 1 cut(s) 140
AxyI CCTNAGG 1 cut(s) 292
BalI TGGCCA 1 cut(s) 242
BanII GRGCYC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 220, 550
BccI CCATC 2 cut(s) 383, 494
BceAI ACGGC 1 cut(s) 312
BciVI GTATCC 1 cut(s) 290
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 2 cut(s) 399, 528
BfmI CTRYAG 1 cut(s) 301
BfrI CTTAAG 1 cut(s) 467
BfuAI ACCTGC 2 cut(s) 539, 567
BfuI GTATCC 1 cut(s) 290
BisI GCNGC 2 cut(s) 209, 564
BlsI GCNGC 2 cut(s) 210, 565
BmsI GCATC 1 cut(s) 271
BplI GAGNNNNNCTC 2 cut(s) 442, 474
BpuEI CTTGAG 1 cut(s) 172
BsaHI GRCGYC 1 cut(s) 84
BsaJI CCNNGG 4 cut(s) 33, 68, 91, 567
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bse21I CCTNAGG 1 cut(s) 292
BseDI CCNNGG 4 cut(s) 33, 68, 91, 567
BseGI GGATG 1 cut(s) 87
BseMII CTCAG 1 cut(s) 147
BseRI GAGGAG 2 cut(s) 69, 152
BseXI GCAGC 2 cut(s) 220, 550
BsgI GTGCAG 1 cut(s) 227
Bsh1285I CGRYCG 1 cut(s) 79
BshFI GGCC 3 cut(s) 242, 290, 519
BsiEI CGRYCG 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 144
BslFI GGGAC 1 cut(s) 448
BsmAI GTCTC 1 cut(s) 75
BsmBI CGTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 448
BsnI GGCC 3 cut(s) 242, 290, 519
Bsp1286I GDGCHC 2 cut(s) 144, 178
Bsp143I GATC 6 cut(s) 58, 63, 76, 340, 361, 484
BspACI CCGC 1 cut(s) 51
BspANI GGCC 3 cut(s) 242, 290, 519
BspCNI CTCAG 1 cut(s) 146
BspMI ACCTGC 2 cut(s) 539, 567
BspPI GGATC 2 cut(s) 58, 492
BspTI CTTAAG 1 cut(s) 467
BssECI CCNNGG 4 cut(s) 33, 68, 91, 567
BssMI GATC 6 cut(s) 58, 63, 76, 340, 361, 484
BssNI GRCGYC 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 567
BstACI GRCGYC 1 cut(s) 84
BstAFI CTTAAG 1 cut(s) 467
BstC8I GCNNGC 2 cut(s) 404, 456
BstDEI CTNAG 3 cut(s) 133, 292, 349
BstDSI CCRYGG 2 cut(s) 33, 68
BstF5I GGATG 1 cut(s) 87
BstKTI GATC 6 cut(s) 61, 66, 79, 343, 364, 487
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 6 cut(s) 58, 63, 76, 340, 361, 484
BstMCI CGRYCG 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstSFI CTRYAG 1 cut(s) 301
BstV1I GCAGC 2 cut(s) 220, 550
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
Bsu36I CCTNAGG 1 cut(s) 292
BsuI GTATCC 1 cut(s) 290
BsuRI GGCC 3 cut(s) 242, 290, 519
BtgI CCRYGG 2 cut(s) 33, 68
BtsCI GGATG 1 cut(s) 87
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 1 cut(s) 522
BveI ACCTGC 2 cut(s) 539, 567
Cac8I GCNNGC 2 cut(s) 404, 456
CaiI CAGNNNCTG 1 cut(s) 460
CviAII CATG 2 cut(s) 171, 223
DdeI CTNAG 3 cut(s) 133, 292, 349
DpnI GATC 6 cut(s) 60, 65, 78, 342, 363, 486
DpnII GATC 6 cut(s) 58, 63, 76, 340, 361, 484
EaeI YGGCCR 1 cut(s) 240
EciI GGCGGA 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 567
Eco147I AGGCCT 1 cut(s) 519
Eco24I GRGCYC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 219
Eco81I CCTNAGG 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 567
EcoT38I GRGCYC 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 567
Esp3I CGTCTC 1 cut(s) 75
FaeI CATG 2 cut(s) 174, 226
FaiI YATR 4 cut(s) 158, 172, 224, 545
FaqI GGGAC 1 cut(s) 448
FatI CATG 2 cut(s) 170, 222
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 2 cut(s) 209, 564
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 2 cut(s) 209, 564
FspBI CTAG 2 cut(s) 399, 528
GluI GCNGC 2 cut(s) 209, 564
HaeIII GGCC 3 cut(s) 242, 290, 519
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 2 cut(s) 174, 226
HindIII AAGCTT 2 cut(s) 231, 275
HinfI GANTC 2 cut(s) 29, 131
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 63, 136
Hpy188III TCNNGA 2 cut(s) 80, 338
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 2 cut(s) 293, 417
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 3 cut(s) 208, 262, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 3 cut(s) 133, 292, 349
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 2 cut(s) 174, 226
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 6 cut(s) 58, 63, 76, 340, 361, 484
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 8 cut(s) 210, 272, 350, 424, 440, 456, 534, 562
Lsp1109I GCAGC 2 cut(s) 220, 550
LweI GCATC 1 cut(s) 271
MaeI CTAG 2 cut(s) 399, 528
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 128
MalI GATC 6 cut(s) 60, 65, 78, 342, 363, 486
MboI GATC 6 cut(s) 58, 63, 76, 340, 361, 484
MboII GAAGA 5 cut(s) 17, 37, 212, 326, 484
MflI RGATCY 1 cut(s) 63
MhlI GDGCHC 2 cut(s) 144, 178
MlsI TGGCCA 1 cut(s) 242
MluCI AATT 1 cut(s) 489
MluNI TGGCCA 1 cut(s) 242
MlyI GAGTC 2 cut(s) 38, 125
MmeI TCCRAC 1 cut(s) 454
Mox20I TGGCCA 1 cut(s) 242
MscI TGGCCA 1 cut(s) 242
MseI TTAA 1 cut(s) 468
Msp20I TGGCCA 1 cut(s) 242
MspCI CTTAAG 1 cut(s) 467
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 6 cut(s) 58, 63, 76, 340, 361, 484
NlaIII CATG 2 cut(s) 174, 226
NmuCI GTSAC 1 cut(s) 128
PaqCI CACCTGC 2 cut(s) 539, 567
PceI AGGCCT 1 cut(s) 519
PkrI GCNGC 2 cut(s) 210, 565
Ple19I CGATCG 1 cut(s) 79
PleI GAGTC 2 cut(s) 37, 125
PpsI GAGTC 2 cut(s) 37, 125
PstNI CAGNNNCTG 1 cut(s) 460
PsuI RGATCY 1 cut(s) 63
PvuI CGATCG 1 cut(s) 79
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 2 cut(s) 209, 564
Sau3AI GATC 6 cut(s) 58, 63, 76, 340, 361, 484
SchI GAGTC 2 cut(s) 38, 125
SduI GDGCHC 2 cut(s) 144, 178
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 1 cut(s) 301
SmlI CTYRAG 2 cut(s) 187, 467
SmoI CTYRAG 2 cut(s) 187, 467
Sse9I AATT 1 cut(s) 489
SseBI AGGCCT 1 cut(s) 519
SsiI CCGC 1 cut(s) 51
SspMI CTAG 2 cut(s) 399, 528
StuI AGGCCT 1 cut(s) 519
StyI CCWWGG 1 cut(s) 567
TaiI ACGT 1 cut(s) 87
TaqI TCGA 3 cut(s) 27, 79, 339
TasI AATT 1 cut(s) 489
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TscAI CASTG 1 cut(s) 529
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 2 cut(s) 208, 563
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 2 cut(s) 29, 225
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 1 cut(s) 529
Vha464I CTTAAG 1 cut(s) 467
XspI CTAG 2 cut(s) 399, 528
ZraI GACGTC 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.