Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003617

Physical Location & Seq

Genomic Coordinates Reverse (-)

19077860 .. 19080390

Gene Structure 2531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g25160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAAGAGATGATGAACAAGTTTTTCGAGTCCGTGGGTTCCTTGTTCGGCGGAGGAGATCAGATCCCGTGGTGCGATCGAGACGTCATCCTCGGTTGTGAGAGAGAAGTCGCGGAGGCCAACAAAGGCGAGTCGGAGGAGCACAGGAGCGAGAGCATTATGAGGTTATCTTGGGCTCTTGTTCACTCCAGGCAACCTGAAGATGTCCACCGTGGAATTGCCATGCTTGAAGCTTCGTTGGCCAACACTAACTCCCCTTTGCATCAAAGAGAGAAGCTTTACCTTCTCGCCGTTGGATACTGCAGAATTGATGATTATTCTAAGAGCCGTGCTCTTGTCGACCAATGCTTAGAGATTGCACCTGATTGGAGACAGGCTCTGTCCCTTAAGAAGATAGTTGAGGATAAAATTGCTAAAGATGGATTTATCGGAATAGGGCTCACTGCAAGTGCTGTTGGACTTATAGCAGGTGGGATTATTGCTGCCTTGGTTCGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006996 GO:0007005 GO:0007031 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016559 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04137 ko04139 map04137 map04139

Pfam Domains

Protein Families

Fis1_TPR_C Fis1_TPR_N

Protein Analysis

167

Amino Acids

18.4

Weight (kDa)

5.42

Isoelectric Point (pI)

34.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fis1_TPR_N	PF14852	51 - 82	5.7e-11	Fis1 N-terminal tetratricopeptide repeat
Fis1_TPR_C	PF14853	90 - 141	1.3e-21	Fis1 C-terminal tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57090 AT3G57090
fragaria_vesca	FvH4_3g28070 FvH4_3g28070 FvH4_6g25160
malus_domestica	MD03G1168600.v1.1 MD11G1194400.v1.1 MD14G1084200.v1.1
prunus_persica	Prupe.4G258900_v2.0.a1 Prupe.7G043800_v2.0.a1 Prupe.7G043800_v2.0.a1
pyrus_communis	pycom03g12490 pycom11g16310 pycom12g07730 pycom14g07390
rosa_chinensis	RchiOBHm_Chr2g0125041 RchiOBHm_Chr5g0050751
rosa_laevigata	RLG00000018844 RLG00000034729
rosa_multiflora	Rmu_sc0003505.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029970 Rroxscaffold_2G00118290 Rroxscaffold_2G00118740
rosa_rugosa	Rorug02G0255100 Rorug05G0263500
rosa_samantha	Rh2AG313700 Rh2BG322000 Rh2CG304100 Rh2DG340300 Rh5AG335600 Rh5BG345100 Rh5CG373000 Rh5DG358200
rosa_wichuraiana	Rw2G025370 Rw5G031670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	458, 486
AatII	GACGTC	1 cut(s)	87
Acc36I	ACCTGC	2 cut(s)	458, 486
AccI	GTMKAC	1 cut(s)	339
AccII	CGCG	1 cut(s)	113
AciI	CCGC	2 cut(s)	51, 113
AclWI	GGATC	1 cut(s)	58
AcoI	YGGCCR	1 cut(s)	240
AcuI	CTGAAG	1 cut(s)	219
AcyI	GRCGYC	1 cut(s)	84
AflII	CTTAAG	1 cut(s)	386
AgsI	TTSAA	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	2 cut(s)	233, 277
AluI	AGCT	2 cut(s)	233, 277
Alw21I	GWGCWC	2 cut(s)	144, 334
Alw26I	GTCTC	2 cut(s)	75, 364
AlwI	GGATC	1 cut(s)	58
AlwNI	CAGNNNCTG	1 cut(s)	379
AoxI	GGCC	2 cut(s)	117, 240
ApeKI	GCWGC	1 cut(s)	482
BalI	TGGCCA	1 cut(s)	242
BanII	GRGCYC	2 cut(s)	178, 441
Bbv12I	GWGCWC	2 cut(s)	144, 334
BbvI	GCAGC	1 cut(s)	469
BccI	CCATC	1 cut(s)	413
BceAI	ACGGC	2 cut(s)	275, 312
BciT130I	CCWGG	1 cut(s)	190
BciVI	GTATCC	1 cut(s)	290
BcoDI	GTCTC	2 cut(s)	75, 364
BfmI	CTRYAG	1 cut(s)	301
BfrI	CTTAAG	1 cut(s)	386
BfuAI	ACCTGC	2 cut(s)	458, 486
BfuI	GTATCC	1 cut(s)	290
BisI	GCNGC	1 cut(s)	483
BlsI	GCNGC	1 cut(s)	484
Bme1390I	CCNGG	1 cut(s)	190
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	190
BmsI	GCATC	1 cut(s)	271
BplI	GAGNNNNNCTC	4 cut(s)	316, 348, 361, 393
BpmI	CTGGAG	1 cut(s)	172
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	5 cut(s)	33, 68, 91, 211, 486
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	5 cut(s)	33, 68, 91, 211, 486
BseGI	GGATG	1 cut(s)	87
BseRI	GAGGAG	2 cut(s)	69, 152
BseXI	GCAGC	1 cut(s)	469
Bsh1236I	CGCG	1 cut(s)	113
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	2 cut(s)	119, 242
BsiEI	CGRYCG	1 cut(s)	79
BsiHKAI	GWGCWC	2 cut(s)	144, 334
BslFI	GGGAC	1 cut(s)	367
BsmAI	GTCTC	2 cut(s)	75, 364
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	367
BsnI	GGCC	2 cut(s)	119, 242
Bsp1286I	GDGCHC	4 cut(s)	144, 178, 334, 441
Bsp143I	GATC	3 cut(s)	58, 63, 76
BspACI	CCGC	2 cut(s)	51, 113
BspANI	GGCC	2 cut(s)	119, 242
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	40
BspMAI	CTGCAG	1 cut(s)	305
BspMI	ACCTGC	2 cut(s)	458, 486
BspPI	GGATC	1 cut(s)	58
BspTI	CTTAAG	1 cut(s)	386
BssECI	CCNNGG	5 cut(s)	33, 68, 91, 211, 486
BssMI	GATC	3 cut(s)	58, 63, 76
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	486
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	84
BstAFI	CTTAAG	1 cut(s)	386
BstDEI	CTNAG	2 cut(s)	321, 349
BstDSI	CCRYGG	3 cut(s)	33, 68, 211
BstF5I	GGATG	1 cut(s)	87
BstFNI	CGCG	1 cut(s)	113
BstKTI	GATC	3 cut(s)	61, 66, 79
BstMAI	GTCTC	2 cut(s)	75, 364
BstMBI	GATC	3 cut(s)	58, 63, 76
BstMCI	CGRYCG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	301
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	469
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
BsuI	GTATCC	1 cut(s)	290
BsuRI	GGCC	2 cut(s)	119, 242
BtgI	CCRYGG	3 cut(s)	33, 68, 211
BtsCI	GGATG	1 cut(s)	87
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	441
BveI	ACCTGC	2 cut(s)	458, 486
CaiI	CAGNNNCTG	1 cut(s)	379
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	8 cut(s)	119, 176, 233, 242, 277, 327, 377, 439
CviKI_1	RGCY	8 cut(s)	119, 176, 233, 242, 277, 327, 377, 439
DdeI	CTNAG	2 cut(s)	321, 349
DpnI	GATC	3 cut(s)	60, 65, 78
DpnII	GATC	3 cut(s)	58, 63, 76
EaeI	YGGCCR	1 cut(s)	240
EciI	GGCGGA	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	486
Eco24I	GRGCYC	2 cut(s)	178, 441
Eco57I	CTGAAG	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	486
EcoT38I	GRGCYC	2 cut(s)	178, 441
ErhI	CCWWGG	1 cut(s)	486
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	1 cut(s)	226
FaiI	YATR	3 cut(s)	161, 224, 464
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	1 cut(s)	222
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	1 cut(s)	483
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	2 cut(s)	178, 441
Fsp4HI	GCNGC	1 cut(s)	483
GluI	GCNGC	1 cut(s)	483
GsuI	CTGGAG	1 cut(s)	172
HaeIII	GGCC	2 cut(s)	119, 242
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	226
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	2 cut(s)	231, 275
HinfI	GANTC	2 cut(s)	29, 131
Hpy166II	GTNNAC	3 cut(s)	184, 208, 340
Hpy188I	TCNGA	3 cut(s)	63, 136, 431
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	3 cut(s)	184, 208, 340
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	4 cut(s)	262, 303, 359, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	2 cut(s)	321, 349
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	58, 63, 76
LmnI	GCTCC	2 cut(s)	139, 147
LpnPI	CCDG	8 cut(s)	130, 175, 202, 210, 359, 375, 453, 481
Lsp1109I	GCAGC	1 cut(s)	469
LweI	GCATC	1 cut(s)	271
MaeII	ACGT	1 cut(s)	84
MalI	GATC	3 cut(s)	60, 65, 78
MboI	GATC	3 cut(s)	58, 63, 76
MboII	GAAGA	3 cut(s)	17, 212, 403
MflI	RGATCY	1 cut(s)	63
MhlI	GDGCHC	4 cut(s)	144, 178, 334, 441
MlsI	TGGCCA	1 cut(s)	242
MluCI	AATT	3 cut(s)	216, 306, 408
MluNI	TGGCCA	1 cut(s)	242
MlyI	GAGTC	2 cut(s)	38, 140
MmeI	TCCRAC	3 cut(s)	114, 274, 436
MnlI	CCTC	6 cut(s)	47, 101, 109, 130, 156, 394
Mox20I	TGGCCA	1 cut(s)	242
MscI	TGGCCA	1 cut(s)	242
MseI	TTAA	1 cut(s)	387
Msp20I	TGGCCA	1 cut(s)	242
MspCI	CTTAAG	1 cut(s)	386
MspR9I	CCNGG	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	190
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	239
NdeII	GATC	3 cut(s)	58, 63, 76
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	1 cut(s)	40
PaqCI	CACCTGC	2 cut(s)	458, 486
PkrI	GCNGC	1 cut(s)	484
Ple19I	CGATCG	1 cut(s)	79
PleI	GAGTC	2 cut(s)	37, 139
PpsI	GAGTC	2 cut(s)	37, 139
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	305
PstNI	CAGNNNCTG	1 cut(s)	379
PsuI	RGATCY	1 cut(s)	63
PvuI	CGATCG	1 cut(s)	79
SalI	GTCGAC	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	1 cut(s)	483
Sau3AI	GATC	3 cut(s)	58, 63, 76
SchI	GAGTC	2 cut(s)	38, 140
ScrFI	CCNGG	1 cut(s)	190
SduI	GDGCHC	4 cut(s)	144, 178, 334, 441
SetI	ASST	9 cut(s)	87, 167, 199, 235, 279, 285, 364, 472, 500
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	3 cut(s)	216, 306, 408
SsiI	CCGC	2 cut(s)	51, 113
StyD4I	CCNGG	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	3 cut(s)	27, 79, 339
TasI	AATT	3 cut(s)	216, 306, 408
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	1 cut(s)	448
TseI	GCWGC	1 cut(s)	482
TspDTI	ATGAA	1 cut(s)	29
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	1 cut(s)	448
Vha464I	CTTAAG	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	339
ZraI	GACGTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.