Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003617

Physical Location & Seq

Genomic Coordinates Forward (+)

27883573 .. 27885935

Gene Structure 2363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1194400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCAGATAACGTTGCGAAATTCTTCGAATCGGTTGGCAATTTCTTCTCCGGCGGCGATCAGATACCATGGTGCGACCGCGACCTCATCGCCGGTATTGAGAAAGAGGTTGCTGATGCTCAGAATGGTTCCCCTGATCACATTTTCAAAGAATGTCTCATGCGATTATCATGGGCTCTTGTTCATTCAAGGCATCCAGAAGATGTGCAACGTGGCATAGCAATGCTTGAAGAGGTTATGAGGGATCCTACTAAAGCCCCTCTGGAAGTGAGAGAGCCGCTATATCTTCTTGCTGTTGGGTATTACAGAAGTGGTGACCATACCAGGTGCAGGGAACTTGTAGAACAGAGTTTGATGGTTGCACCTGATTGGAGACAGGCACTGAACCTTAAGAAAATGAATGAAGCCAAGATCAAAAGAGATGGTGCGATTGGCATAGGGATAGCAGCGACTGCTGTTGGACTGCTTGCTGGTGGAATTGCAGCAGCTGTGGCTAGGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006996 GO:0007031 GO:0008150 GO:0009987 GO:0016043 GO:0016559 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04137 ko04139 map04137 map04139

Pfam Domains

Protein Families

Fis1_TPR_C Fis1_TPR_N

Protein Analysis

169

Amino Acids

18.53

Weight (kDa)

6.43

Isoelectric Point (pI)

31.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fis1_TPR_N	PF14852	51 - 82	4e-12	Fis1 N-terminal tetratricopeptide repeat
Fis1_TPR_C	PF14853	91 - 142	7.7e-16	Fis1 C-terminal tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57090 AT3G57090
fragaria_vesca	FvH4_3g28070 FvH4_3g28070 FvH4_6g25160
malus_domestica	MD03G1168600.v1.1 MD11G1194400.v1.1 MD14G1084200.v1.1
prunus_persica	Prupe.4G258900_v2.0.a1 Prupe.7G043800_v2.0.a1 Prupe.7G043800_v2.0.a1
pyrus_communis	pycom03g12490 pycom11g16310 pycom12g07730 pycom14g07390
rosa_chinensis	RchiOBHm_Chr2g0125041 RchiOBHm_Chr5g0050751
rosa_laevigata	RLG00000018844 RLG00000034729
rosa_multiflora	Rmu_sc0003505.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029970 Rroxscaffold_2G00118290 Rroxscaffold_2G00118740
rosa_rugosa	Rorug02G0255100 Rorug05G0263500
rosa_samantha	Rh2AG313700 Rh2BG322000 Rh2CG304100 Rh2DG340300 Rh5AG335600 Rh5BG345100 Rh5CG373000 Rh5DG358200
rosa_wichuraiana	Rw2G025370 Rw5G031670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	81
AciI	CCGC	3 cut(s)	54, 79, 278
AclI	AACGTT	1 cut(s)	12
AclWI	GGATC	2 cut(s)	239, 252
AcsI	RAATTY	1 cut(s)	20
AfiI	CCNNNNNNNGG	1 cut(s)	330
AflII	CTTAAG	1 cut(s)	389
AgsI	TTSAA	3 cut(s)	148, 189, 230
AjnI	CCWGG	1 cut(s)	323
AluBI	AGCT	1 cut(s)	488
AluI	AGCT	1 cut(s)	488
Alw26I	GTCTC	2 cut(s)	161, 367
AlwI	GGATC	2 cut(s)	239, 252
AlwNI	CAGNNNCTG	3 cut(s)	382, 452, 488
ApeKI	GCWGC	3 cut(s)	446, 482, 485
ApoI	RAATTY	1 cut(s)	20
Asp700I	GAANNNNTTC	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	326
AsuII	TTCGAA	1 cut(s)	27
BaeI	ACNNNNGTAYC	2 cut(s)	56, 89
BamHI	GGATCC	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	178
BbvI	GCAGC	3 cut(s)	458, 494, 497
BccI	CCATC	2 cut(s)	349, 416
BciT130I	CCWGG	1 cut(s)	325
BclI	TGATCA	1 cut(s)	136
BcoDI	GTCTC	2 cut(s)	161, 367
BfaI	CTAG	1 cut(s)	495
BfrI	CTTAAG	1 cut(s)	389
BisI	GCNGC	5 cut(s)	55, 278, 447, 483, 486
BlsI	GCNGC	5 cut(s)	56, 279, 448, 484, 487
Bme1390I	CCNGG	1 cut(s)	325
BmiI	GGNNCC	2 cut(s)	130, 246
BmrFI	CCNGG	1 cut(s)	325
BmsI	GCATC	2 cut(s)	106, 202
Bpu14I	TTCGAA	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	330
Bse118I	RCCGGY	1 cut(s)	92
Bse3DI	GCAATG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	1 cut(s)	330
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	134
BseXI	GCAGC	3 cut(s)	458, 494, 497
BsgI	GTGCAG	1 cut(s)	349
Bsh1236I	CGCG	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	79
BsiEI	CGRYCG	1 cut(s)	79
BsiSI	CCGG	2 cut(s)	51, 93
BslI	CCNNNNNNNGG	1 cut(s)	330
BsmAI	GTCTC	2 cut(s)	161, 367
Bsp119I	TTCGAA	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	4 cut(s)	58, 136, 244, 411
Bsp19I	CCATGG	1 cut(s)	68
BspACI	CCGC	3 cut(s)	54, 79, 278
BspCNI	CTCAG	1 cut(s)	133
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	130, 246
BspPI	GGATC	2 cut(s)	239, 252
BspT104I	TTCGAA	1 cut(s)	27
BspTI	CTTAAG	1 cut(s)	389
BsrDI	GCAATG	1 cut(s)	228
BsrFI	RCCGGY	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	4 cut(s)	58, 136, 244, 411
BssT1I	CCWWGG	1 cut(s)	68
Bst2UI	CCWGG	1 cut(s)	325
Bst6I	CTCTTC	1 cut(s)	225
BstAFI	CTTAAG	1 cut(s)	389
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstBI	TTCGAA	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	1 cut(s)	120
BstDSI	CCRYGG	1 cut(s)	68
BstEII	GGTNACC	1 cut(s)	314
BstF5I	GGATG	1 cut(s)	193
BstFNI	CGCG	1 cut(s)	81
BstKTI	GATC	4 cut(s)	61, 139, 247, 414
BstMAI	GTCTC	2 cut(s)	161, 367
BstMBI	GATC	4 cut(s)	58, 136, 244, 411
BstMCI	CGRYCG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	2 cut(s)	452, 491
BstNI	CCWGG	1 cut(s)	325
BstPI	GGTNACC	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	323
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	3 cut(s)	458, 494, 497
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BtgI	CCRYGG	1 cut(s)	68
BtgZI	GCGATG	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	380
Cac8I	GCNNGC	1 cut(s)	468
CaiI	CAGNNNCTG	3 cut(s)	382, 452, 488
Cfr10I	RCCGGY	1 cut(s)	92
CsiI	ACCWGGT	1 cut(s)	323
CviAII	CATG	3 cut(s)	69, 160, 171
CviJI	RGCY	6 cut(s)	176, 257, 277, 407, 488, 494
CviKI_1	RGCY	6 cut(s)	176, 257, 277, 407, 488, 494
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	4 cut(s)	60, 138, 246, 413
DpnII	GATC	4 cut(s)	58, 136, 244, 411
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	178
Eco91I	GGTNACC	1 cut(s)	314
EcoO65I	GGTNACC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	3 cut(s)	72, 163, 174
FaiI	YATR	8 cut(s)	70, 161, 172, 218, 239, 283, 321, 437
FatI	CATG	3 cut(s)	68, 159, 170
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	5 cut(s)	55, 278, 447, 483, 486
FokI	GGATG	1 cut(s)	180
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	5 cut(s)	55, 278, 447, 483, 486
FspBI	CTAG	1 cut(s)	495
GluI	GCNGC	5 cut(s)	55, 278, 447, 483, 486
HapII	CCGG	2 cut(s)	51, 93
Hin1II	CATG	3 cut(s)	72, 163, 174
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	2 cut(s)	51, 93
HphI	GGTGA	1 cut(s)	326
Hpy188I	TCNGA	2 cut(s)	63, 123
Hpy188III	TCNNGA	2 cut(s)	197, 263
HpyCH4IV	ACGT	2 cut(s)	12, 211
HpyCH4V	TGCA	4 cut(s)	208, 330, 362, 482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	452, 491
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	2 cut(s)	12, 211
Hsp92II	CATG	3 cut(s)	72, 163, 174
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	4 cut(s)	58, 136, 244, 411
Lsp1109I	GCAGC	3 cut(s)	458, 494, 497
LweI	GCATC	2 cut(s)	106, 202
MabI	ACCWGGT	1 cut(s)	323
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	2 cut(s)	12, 211
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	4 cut(s)	60, 138, 246, 413
MboI	GATC	4 cut(s)	58, 136, 244, 411
MboII	GAAGA	5 cut(s)	16, 37, 212, 242, 278
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	3 cut(s)	20, 40, 477
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	5 cut(s)	95, 100, 226, 234, 270
MroXI	GAANNNNTTC	1 cut(s)	23
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	488
MspCI	CTTAAG	1 cut(s)	389
MspI	CCGG	2 cut(s)	51, 93
MspR9I	CCNGG	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	325
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	452, 491
NcoI	CCATGG	1 cut(s)	68
NdeII	GATC	4 cut(s)	58, 136, 244, 411
NlaIII	CATG	3 cut(s)	72, 163, 174
NlaIV	GGNNCC	2 cut(s)	130, 246
NmuCI	GTSAC	1 cut(s)	314
NspV	TTCGAA	1 cut(s)	27
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	5 cut(s)	56, 279, 448, 484, 487
Psp1406I	AACGTT	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	323
PspEI	GGTNACC	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	323
PspN4I	GGNNCC	2 cut(s)	130, 246
PstNI	CAGNNNCTG	3 cut(s)	382, 452, 488
PsuI	RGATCY	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	488
RseI	CAYNNNNRTG	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	5 cut(s)	55, 278, 447, 483, 486
Sau3AI	GATC	4 cut(s)	58, 136, 244, 411
ScrFI	CCNGG	1 cut(s)	325
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	9 cut(s)	15, 87, 111, 214, 237, 329, 367, 390, 490
SexAI	ACCWGGT	1 cut(s)	323
SfaNI	GCATC	2 cut(s)	106, 202
SfuI	TTCGAA	1 cut(s)	27
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	3 cut(s)	20, 40, 477
SsiI	CCGC	3 cut(s)	54, 79, 278
SspMI	CTAG	1 cut(s)	495
StyD4I	CCNGG	1 cut(s)	323
StyI	CCWWGG	1 cut(s)	68
TaiI	ACGT	2 cut(s)	15, 214
TaqI	TCGA	1 cut(s)	27
TasI	AATT	3 cut(s)	20, 40, 477
TauI	GCSGC	2 cut(s)	57, 280
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	1 cut(s)	387
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	3 cut(s)	446, 482, 485
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	3 cut(s)	173, 413, 417
TspRI	CASTG	1 cut(s)	387
Vha464I	CTTAAG	1 cut(s)	389
XapI	RAATTY	1 cut(s)	20
XmnI	GAANNNNTTC	1 cut(s)	23
XspI	CTAG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.