Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001799

Physical Location & Seq

Genomic Coordinates Reverse (-)

26712427 .. 26717994

Gene Structure 5568 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0255100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3549 bp

ATGGATTCACCCGAACGTAGTCGGAGTTATGTGAAACGAGATGTGGAGGATGGTTCTGATTTAAAGAGTGATAGGGCGGGAGATGATGAAGAGTGGGAGGGCAGTGATAAGAGGAAGCATCGTTCGAGCAGATCAAGGAAATCGGGTAATGGAGAAGAGGCGGGAGGACTAGATGGCAGTGGAAGAAGAAGAAGTCATGGGGATAGAAGTGAGAGCCGTAAACGATCAGGTGGTTCTAGCAATGCAGATAGTGATGAAGAAGACTATGACTCGAGAAAAGAGTCGCGTTCTAAGCTCATGAAGAAGAAACAAGAAGAGAGTAGTTTGGAGAAGTTGAGCAGCTGGTATCAGGATGGAGAATTGGAGAATAGGCAAGATGGTGGAGATAAGTCAGGGAGTAGAGGGCTGATTAGAGCTGAAGAAAATGAAAGAAGGAAACTGGCTTCAAAGCTTGCACAGCACGAGAATTCCCAGACTAAAAGTAAGAGCAAAGAAGAAAGGTCTCATGATGGAGAACATGAAAAGACACTGGACAGAGATTCCAAGTATTCTGACAGGAAAGAAAGCATTCGAGAGAAGGCTCATGGATCTTCCGAACAGGTGAGGACTTCGAGAAGAAAATGGGATGAATCAGACGGTGGCAAGAAAGCAGAAGAGAGTTATCATGAAAGATCTGATTCAAGAAGCAGTAAGCCTTCTGATCCTAAGTATGAGACTTCTAAAGAGAAAACTGTGTCAGCAAGAAATGAACCAAGCGAAAGTAAAATCAGGGGAATAGATTCAAGCAGTGAAAGGGGTACTAAATCTAATAACAAGGAAGAGAGAAAAGCTGATGCGGAAAAGAGTAAGAGCAAAAACAGGGGAGAAATACTTGAAGAAGATAACAGGGGCAGTCCTATCACTCGTGAAGACAGATCAGGCAAGGAGAAAGCTGAAAAGCATAGACAGCAGAGAACTCCCACTGCTCGCGATGCTGCCGAGGGCAGGGAGAGGTCGTCTAATGCAGATGACGATGCAAGTGCAGGGATTAAAGATAAGGGTGCTAGAGAATTTGGAAATACTACCAGGTCAAGGACACCTGAGAGGCCTGGGAGGCGATATCAGGATTCAGAACACTTTGAGACGGATTATGACCGAAGTTTTAATCTCAAGCGGAAGGAACTGGAAAAAGATGGTTATAGGGACGACCGACCTAAAGGCAGAGATGATAATTATACTGACAGGAATAGGGACCGGGAAGTCCCCAAAGAGAACTGGAAAAGACGGCAACCCCCCAGTAATGACAAGGATTCCAAAAATGGGGATATTAGTTATGATCATAGCAGGGAGTGGGAGCTGCCGAGACATGGTCGTGAGAGGGGTGACAACGAAAGACCTCATGGTCGGTCTGGTAATAGGAAAGATGGAAGCCGGGGTGAAGCTGTGAAAACTTCATCAAACTTTGGAATTTCAAATGAAAATTATGATGTGATTGAGATCCAAACTAAGCCAATAGATTATGGAAGAGCAGAGTTGGGATCCAACTTTTCTAGGAGAAACGAAGTTGGTCAACAATCTGATGGAAAATCAGCACCAATTGATGAAGAATGGACAAGGAAGAGTGATATGTATGGGTCTGGACCACCTAGGGAAGATTCAAAGGAAAGATATACTGATGATACTACCTCCTTGCGAGATCAGAGTTCATGGAAGGATGACTTTGACTCCCATGGAGTGAAGGGAAGGGGACAAAGAGGTTCTATGCCTGGCCGCAGTGCTGGTGGCCAGAGTTCTAGTGGCGGTTCACAGCCTCCATATGGAAATGCAGAGCCAGGACCCTTCAATAGAAATGCTTCTCAAGGAGTGAAAGGGGGTAGAGGCGGGAGAGGAGGAAGGGGTAGGCTTACTGGAAGAGACGGCCAGCAGGTAACAATCCCAATTCCAATAATGGGATCACCATTTGGACCTATTGGAATGCCTCCGCCTGGACCCATGCAGCCACTTACCCCTAGCATGTCACCAGCTCCAGGTCCGCCAATGTTTCCATTTTCTCCACCTGTGTGGGCTGGGGCTCGAGGTGTTGACATCAGTATGTTAACCATCCCACCTACTGTTCCTCATGGATCATCCGGCCCAAGATTTCCTCCTAATATGGTGTCTCCAACTAACCCTTCCATGTTTTTTAGCCAATCTGGGCCTGGAAGAGGAGGTCCTCCGAGCATATCTGGCCCTGGTTTTAATCCTGCAGGGCCAATGGGACGAGGTACTCCTGCTGATAAAAATCAAGGTGGTTGGGTTCCTCATAAAAGTAGTGGACCTCCTGGTAAAGCTCCTTCTAGAGGAGAGCAGAACGATTACTCTCAAAATTTTGTTGATACTGGTATGCGGCCCCAGAATTTCATCAGGGAGCTAGAGCTTACAAATGTTGTGGAGGATTACCCCAAGCTTAGGGAGCTTATACAGAAAAAAGATGAGATTGTGGCAAAAGCTGCTTCTCATCCCATGTACCATAAATGTGACCTGAAAGAGTTTGAGCTGTCTCCCGAGTTCTTTGGAACCAAATTTGATGTGATTCTTGTTGATCCACCATGGGAGGAATACGTTCATCGCGCTCCTGGTGTTGCTGACCATACAGAGTATTGGACATTTGAAGAAATAATGAACCTTAAGATTGAGGCAATAGCAGACACACCTTCCTTTATTTTCCTTTGGGTGGGTGATGGCATGGGTCTTGAGCAAGGCCGTCAATGTCTGAAAAAGTGGGGATTTCGTAGGTGTGAAGATATATGTTGGGTGAAGACGAACAAAACTAATGCAACTCCTGGTTTGCGGCATGATTCTCACACATTGTTTCAGCACTCAAAGGAACATTGCTTGATGGGAATAAAAGGCACCGTTCGTCGCAGCACTGATGGCCATATAATCCATGCCAACATTGATACCGATGTAATAATAGCTGAGGAACCCCCATATGGTTCAACCCAGAAGCCTGAGGACATGTACAGGATAATTGAGCATTTTGCCCTTGGTCGCAGGAGGCTTGAGCTCTTTGGTGAAGACCACAATATTCGGGCTGGTTGGCTGACTGTTGGTAATGGATTATCCTCATCAAACTTTAATGCCGAGGCTTATCTCCGGAACTTTGCTGACAAGGATGGGAAAGTTTGGCAAGGAGGGGGTGGACGAAATCCACCTCCAGAGGCACCTCATCTGGTTGTAACAACCCCTGATATAGAAGCCCTTCGGCCCAAGTCACCAATGAAAAACCAGCAACAGATGCAGCACCAGCAATCAACATCTATTTCTCTGACAACAGCAAATTCCTCCAACAGAAGGCCTGCTGGAAACTCACCCCAAAATCCAAGCGCTTTAAGTATGAACCAAGAAGCTTCAAGTTCCAATCCCTCAACTCCAGCTCCTTGGGCTTCTTCGCCAATGGAGGGTTTTAAAGGGAGAGAAGGCAGCATTATGCCTTCAGATGATAAGGTTTTTGATATGTATGGTTACAGCGGACAGGCAAATGGTGACTATATAGATTTTGAGTCTAACAGACACATGAATTTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006996 GO:0007005 GO:0007031 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016559 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04137 ko04139 map04137 map04139

Pfam Domains

Protein Families

Fis1_TPR_C Fis1_TPR_N

Protein Analysis

1182

Amino Acids

131.92

Weight (kDa)

7.97

Isoelectric Point (pI)

56.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MT-A70	PF05063	848 - 1025	2.1e-52	MT-A70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33810
fragaria_vesca	FvH4_5g25840
malus_domestica	MD08G1215600.v1.1 MD15G1400100.v1.1
prunus_persica	Prupe.1G547300_v2.0.a1
pyrus_communis	pycom08g18670 pycom15g35870
rosa_chinensis	RchiOBHm_Chr3g0466881 RchiOBHm_Chr6g0267291 RchiOBHm_Chr7g0216321
rosa_laevigata	RLG00000002582 RLG00000008029 RLG00000021151
rosa_multiflora	Rmu_sc0006888.1_g000018 Rmu_sc0015060.1_g000020 Rmu_sc0043009.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243330 Rroxscaffold_4G00297970
rosa_rugosa	Rorug02G0255100 Rorug07G0050100 Rorug07G0159900
rosa_samantha	Rh1AG146800 Rh1CG035900 Rh1CG138200 Rh1DG153500 Rh2AG466000 Rh2CG452600 Rh3AG132000 Rh3BG153100 Rh3BG373000 Rh4AG075700 Rh4AG132100 Rh4BG263700 Rh4DG126200 Rh4DG241900 Rh5BG107400 Rh5BG107500 Rh5CG247400 Rh5DG265500 Rh5DG495500 Rh6CG166000 Rh7BG241400 Rh7BG289600 Rh7DG263500 Rh7DG299700
rosa_wichuraiana	Rw6G014070 Rw7G025290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1238, 1380
Acc36I	ACCTGC	1 cut(s)	1894
AccB1I	GGYRCC	2 cut(s)	2870, 3181
AccII	CGCG	3 cut(s)	286, 969, 2589
AccIII	TCCGGA	1 cut(s)	3114
AclWI	GGATC	8 cut(s)	595, 695, 1471, 1512, 1525, 1939, 2110, 2555
AcoI	YGGCCR	4 cut(s)	1747, 1762, 1897, 2893
AcsI	RAATTY	8 cut(s)	466, 1049, 1446, 2344, 2374, 2540, 3298, 3538
AcuI	CTGAAG	2 cut(s)	438, 3438
AfaI	GTAC	4 cut(s)	799, 2245, 2486, 2981
AfeI	AGCGCT	1 cut(s)	3346
AflII	CTTAAG	1 cut(s)	2645
AflIII	ACRYGT	1 cut(s)	2976
AjuI	GAANNNNNNNTTGG	2 cut(s)	2134, 2166
AleI	CACNNNNGTG	1 cut(s)	2038
AloI	GAACNNNNNNTCC	2 cut(s)	106, 138
Alw21I	GWGCWC	1 cut(s)	3027
Alw26I	GTCTC	7 cut(s)	507, 707, 1115, 1336, 1887, 2142, 2523
AlwI	GGATC	8 cut(s)	595, 695, 1471, 1512, 1525, 1939, 2110, 2555
Ama87I	CYCGRG	3 cut(s)	271, 2052, 2522
Aor13HI	TCCGGA	1 cut(s)	3114
Aor51HI	AGCGCT	1 cut(s)	3346
ApeKI	GCWGC	8 cut(s)	339, 974, 1336, 1975, 2468, 2883, 3259, 3441
ApoI	RAATTY	8 cut(s)	466, 1049, 1446, 2344, 2374, 2540, 3298, 3538
Asp700I	GAANNNNTTC	5 cut(s)	567, 778, 1831, 2580, 3219
AspA2I	CCTAGG	1 cut(s)	1625
AspLEI	GCGC	2 cut(s)	2591, 3347
AsuC2I	CCSGG	2 cut(s)	1235, 1412
AvaI	CYCGRG	3 cut(s)	271, 2052, 2522
AvaII	GGWCC	8 cut(s)	1231, 1619, 1814, 1943, 1967, 2009, 2189, 2294
AvrII	CCTAGG	1 cut(s)	1625
AxyI	CCTNAGG	1 cut(s)	2970
BaeI	ACNNNNGTAYC	2 cut(s)	2910, 2943
BalI	TGGCCA	2 cut(s)	1764, 2895
BamHI	GGATCC	1 cut(s)	1517
BanI	GGYRCC	2 cut(s)	2870, 3181
BanII	GRGCYC	2 cut(s)	2053, 3027
BarI	GAAGNNNNNNTAC	2 cut(s)	2296, 2328
BauI	CACGAG	2 cut(s)	461, 903
BbsI	GAAGAC	4 cut(s)	267, 915, 2783, 3042
Bbv12I	GWGCWC	1 cut(s)	3027
BbvCI	CCTCAGC	1 cut(s)	2937
BbvI	GCAGC	8 cut(s)	351, 961, 1323, 1987, 2455, 2895, 3271, 3453
BceAI	ACGGC	4 cut(s)	201, 1280, 1912, 2706
BcgI	CGANNNNNNTGC	2 cut(s)	1001, 1035
BclI	TGATCA	1 cut(s)	1315
BcnI	CCSGG	2 cut(s)	1235, 1412
BcoDI	GTCTC	7 cut(s)	507, 707, 1115, 1336, 1887, 2142, 2523
BfaI	CTAG	9 cut(s)	170, 237, 1044, 1530, 1626, 1773, 1989, 2316, 2390
BfmI	CTRYAG	1 cut(s)	2223
BfoI	RGCGCY	1 cut(s)	3348
BfrI	CTTAAG	1 cut(s)	2645
BfuAI	ACCTGC	1 cut(s)	1894
BglI	GCCNNNNNGGC	1 cut(s)	1093
BglII	AGATCT	1 cut(s)	671
BlnI	CCTAGG	1 cut(s)	1625
Bme18I	GGWCC	8 cut(s)	1231, 1619, 1814, 1943, 1967, 2009, 2189, 2294
BmeT110I	CYCGRG	3 cut(s)	271, 2052, 2522
BmrI	ACTGGG	1 cut(s)	1269
BmsI	GCATC	5 cut(s)	127, 823, 961, 1003, 3246
BmuI	ACTGGG	1 cut(s)	1269
BpiI	GAAGAC	4 cut(s)	267, 915, 2783, 3042
BpmI	CTGGAG	3 cut(s)	1989, 3159, 3375
Bpu10I	CCTNAGC	2 cut(s)	2426, 2937
BpuEI	CTTGAG	4 cut(s)	1133, 1821, 2732, 3041
BpuMI	CCSGG	2 cut(s)	1235, 1412
BsaBI	GATNNNNATC	2 cut(s)	1475, 2259
BsaI	GGTCTC	1 cut(s)	507
BsaWI	WCCGGW	1 cut(s)	3114
BsaXI	ACNNNNNCTCC	6 cut(s)	980, 1010, 1688, 1718, 3379, 3409
Bse1I	ACTGG	7 cut(s)	444, 534, 1167, 1259, 1275, 1891, 2362
Bse21I	CCTNAGG	1 cut(s)	2970
Bse3DI	GCAATG	2 cut(s)	247, 2848
Bse8I	GATNNNNATC	2 cut(s)	1475, 2259
BseAI	TCCGGA	1 cut(s)	3114
BseGI	GGATG	8 cut(s)	55, 358, 631, 1699, 2079, 2105, 2476, 3139
BseJI	GATNNNNATC	2 cut(s)	1475, 2259
BseMI	GCAATG	2 cut(s)	247, 2848
BseMII	CTCAG	3 cut(s)	1071, 2928, 2961
BseNI	ACTGG	7 cut(s)	444, 534, 1167, 1259, 1275, 1891, 2362
BseRI	GAGGAG	3 cut(s)	1881, 2199, 2334
BseXI	GCAGC	8 cut(s)	351, 961, 1323, 1987, 2455, 2895, 3271, 3453
BseYI	CCCAGC	1 cut(s)	2045
BsgI	GTGCAG	1 cut(s)	1041
Bsh1236I	CGCG	3 cut(s)	286, 969, 2589
Bsh1285I	CGRYCG	1 cut(s)	1189
BshNI	GGYRCC	2 cut(s)	2870, 3181
BsiEI	CGRYCG	1 cut(s)	1189
BsiHKAI	GWGCWC	1 cut(s)	3027
BsiHKCI	CYCGRG	3 cut(s)	271, 2052, 2522
BsiSI	CCGG	4 cut(s)	1234, 1411, 2109, 3115
BslFI	GGGAC	5 cut(s)	1196, 1226, 1244, 1740, 2250
BsmAI	GTCTC	7 cut(s)	507, 707, 1115, 1336, 1887, 2142, 2523
BsmBI	CGTCTC	2 cut(s)	1115, 1887
BsmFI	GGGAC	5 cut(s)	1196, 1226, 1244, 1740, 2250
BsmI	GAATGC	2 cut(s)	567, 1959
Bso31I	GGTCTC	1 cut(s)	507
BsoBI	CYCGRG	3 cut(s)	271, 2052, 2522
Bsp1286I	GDGCHC	2 cut(s)	2053, 3027
Bsp13I	TCCGGA	1 cut(s)	3114
Bsp1407I	TGTACA	1 cut(s)	2979
Bsp19I	CCATGG	2 cut(s)	1708, 2567
Bsp68I	TCGCGA	1 cut(s)	969
BspCNI	CTCAG	3 cut(s)	1072, 2929, 2962
BspEI	TCCGGA	1 cut(s)	3114
BspFNI	CGCG	3 cut(s)	286, 969, 2589
BspHI	TCATGA	3 cut(s)	297, 505, 664
BspMAI	CTGCAG	1 cut(s)	2227
BspMI	ACCTGC	1 cut(s)	1894
BspPI	GGATC	8 cut(s)	595, 695, 1471, 1512, 1525, 1939, 2110, 2555
BspQI	GCTCTTC	1 cut(s)	1498
BspT107I	GGYRCC	2 cut(s)	2870, 3181
BspTI	CTTAAG	1 cut(s)	2645
BspTNI	GGTCTC	1 cut(s)	507
BsrDI	GCAATG	2 cut(s)	247, 2848
BsrGI	TGTACA	1 cut(s)	2979
BsrI	ACTGG	7 cut(s)	444, 534, 1167, 1259, 1275, 1891, 2362
BssSI	CACGAG	2 cut(s)	461, 903
BssT1I	CCWWGG	5 cut(s)	1625, 1708, 2567, 3004, 3398
Bst2BI	CACGAG	2 cut(s)	461, 903
Bst4CI	ACNGT	5 cut(s)	638, 733, 2092, 2875, 3067
Bst6I	CTCTTC	9 cut(s)	84, 150, 309, 648, 813, 1498, 1592, 1885, 2176
BstAFI	CTTAAG	1 cut(s)	2645
BstAPI	GCANNNNNTGC	2 cut(s)	2468, 3256
BstAUI	TGTACA	1 cut(s)	2979
BstC8I	GCNNGC	4 cut(s)	453, 967, 1901, 3318
BstDEI	CTNAG	7 cut(s)	291, 705, 1080, 1485, 2426, 2937, 2970
BstDSI	CCRYGG	2 cut(s)	1708, 2567
BstENI	CCTNNNNNAGG	2 cut(s)	2181, 2316
BstF5I	GGATG	8 cut(s)	55, 358, 631, 1699, 2079, 2105, 2476, 3139
BstFNI	CGCG	3 cut(s)	286, 969, 2589
BstH2I	RGCGCY	1 cut(s)	3348
BstHHI	GCGC	2 cut(s)	2591, 3347
BstMAI	GTCTC	7 cut(s)	507, 707, 1115, 1336, 1887, 2142, 2523
BstMCI	CGRYCG	1 cut(s)	1189
BstNSI	RCATGY	2 cut(s)	1996, 2980
BstSFI	CTRYAG	1 cut(s)	2223
BstUI	CGCG	3 cut(s)	286, 969, 2589
BstV1I	GCAGC	8 cut(s)	351, 961, 1323, 1987, 2455, 2895, 3271, 3453
BstV2I	GAAGAC	4 cut(s)	267, 915, 2783, 3042
BstX2I	RGATCY	4 cut(s)	587, 671, 1476, 1517
BstXI	CCANNNNNNTGG	2 cut(s)	2040, 3399
BstYI	RGATCY	4 cut(s)	587, 671, 1476, 1517
Bsu36I	CCTNAGG	1 cut(s)	2970
BtgI	CCRYGG	2 cut(s)	1708, 2567
BtgZI	GCGATG	2 cut(s)	984, 2570
BtsCI	GGATG	8 cut(s)	55, 358, 631, 1699, 2079, 2105, 2476, 3139
BtsI	GCAGTG	5 cut(s)	109, 184, 793, 960, 1759
BtsIMutI	CAGTG	7 cut(s)	109, 184, 527, 793, 960, 1759, 2886
BtuMI	TCGCGA	1 cut(s)	969
BveI	ACCTGC	1 cut(s)	1894
Cac8I	GCNNGC	4 cut(s)	453, 967, 1901, 3318
CciI	TCATGA	3 cut(s)	297, 505, 664
CfoI	GCGC	2 cut(s)	2591, 3347
CsiI	ACCWGGT	1 cut(s)	1064
Csp6I	GTAC	4 cut(s)	798, 2244, 2485, 2980
CspCI	CAANNNNNGTGG	2 cut(s)	2388, 2423
CviQI	GTAC	4 cut(s)	798, 2244, 2485, 2980
DdeI	CTNAG	7 cut(s)	291, 705, 1080, 1485, 2426, 2937, 2970
DraI	TTTAAA	2 cut(s)	63, 3427
DrdI	GACNNNNNNGTC	2 cut(s)	1238, 1380
DseDI	GACNNNNNNGTC	2 cut(s)	1238, 1380
EaeI	YGGCCR	4 cut(s)	1747, 1762, 1897, 2893
Eam1104I	CTCTTC	9 cut(s)	84, 150, 309, 648, 813, 1498, 1592, 1885, 2176
EarI	CTCTTC	9 cut(s)	84, 150, 309, 648, 813, 1498, 1592, 1885, 2176
EciI	GGCGGA	2 cut(s)	1950, 2001
Ecl136II	GAGCTC	1 cut(s)	3025
Eco130I	CCWWGG	5 cut(s)	1625, 1708, 2567, 3004, 3398
Eco147I	AGGCCT	2 cut(s)	1087, 3316
Eco24I	GRGCYC	2 cut(s)	2053, 3027
Eco31I	GGTCTC	1 cut(s)	507
Eco32I	GATATC	1 cut(s)	1100
Eco47I	GGWCC	8 cut(s)	1231, 1619, 1814, 1943, 1967, 2009, 2189, 2294
Eco47III	AGCGCT	1 cut(s)	3346
Eco53kI	GAGCTC	1 cut(s)	3025
Eco57I	CTGAAG	2 cut(s)	438, 3438
Eco81I	CCTNAGG	1 cut(s)	2970
Eco88I	CYCGRG	3 cut(s)	271, 2052, 2522
EcoICRI	GAGCTC	1 cut(s)	3025
EcoNI	CCTNNNNNAGG	2 cut(s)	2181, 2316
EcoO109I	RGGNCCY	2 cut(s)	1814, 2189
EcoRI	GAATTC	1 cut(s)	466
EcoRV	GATATC	1 cut(s)	1100
EcoT14I	CCWWGG	5 cut(s)	1625, 1708, 2567, 3004, 3398
EcoT38I	GRGCYC	2 cut(s)	2053, 3027
ErhI	CCWWGG	5 cut(s)	1625, 1708, 2567, 3004, 3398
Esp3I	CGTCTC	2 cut(s)	1115, 1887
FalI	AAGNNNNNCTT	2 cut(s)	1682, 1714
FaqI	GGGAC	5 cut(s)	1196, 1226, 1244, 1740, 2250
FauI	CCCGC	3 cut(s)	70, 154, 1853
FauNDI	CATATG	2 cut(s)	1795, 2950
FbaI	TGATCA	1 cut(s)	1315
FokI	GGATG	8 cut(s)	62, 365, 638, 1706, 2066, 2092, 2463, 3146
FriOI	GRGCYC	2 cut(s)	2053, 3027
FspBI	CTAG	9 cut(s)	170, 237, 1044, 1530, 1626, 1773, 1989, 2316, 2390
GlaI	GCGC	2 cut(s)	2590, 3346
GsaI	CCCAGC	1 cut(s)	2049
GsuI	CTGGAG	3 cut(s)	1989, 3159, 3375
HaeII	RGCGCY	1 cut(s)	3348
HapII	CCGG	4 cut(s)	1234, 1411, 2109, 3115
HhaI	GCGC	2 cut(s)	2591, 3347
Hin6I	GCGC	2 cut(s)	2589, 3345
HinP1I	GCGC	2 cut(s)	2589, 3345
HincII	GTYRAC	3 cut(s)	1550, 2062, 2076
HindII	GTYRAC	3 cut(s)	1550, 2062, 2076
HindIII	AAGCTT	3 cut(s)	449, 2423, 3366
HpaI	GTTAAC	1 cut(s)	2076
HpaII	CCGG	4 cut(s)	1234, 1411, 2109, 3115
Hpy166II	GTNNAC	7 cut(s)	221, 1550, 1784, 2062, 2076, 2294, 3161
Hpy8I	GTNNAC	7 cut(s)	221, 1550, 1784, 2062, 2076, 2294, 3161
Hpy99I	CGWCG	1 cut(s)	2883
HpyCH4III	ACNGT	5 cut(s)	638, 733, 2092, 2875, 3067
HpyCH4IV	ACGT	2 cut(s)	16, 2580
HpyF3I	CTNAG	7 cut(s)	291, 705, 1080, 1485, 2426, 2937, 2970
HpySE526I	ACGT	2 cut(s)	16, 2580
HspAI	GCGC	2 cut(s)	2589, 3345
Kpn2I	TCCGGA	1 cut(s)	3114
Ksp22I	TGATCA	1 cut(s)	1315
KspAI	GTTAAC	1 cut(s)	2076
LguI	GCTCTTC	1 cut(s)	1498
LmnI	GCTCC	7 cut(s)	1333, 2008, 2314, 2386, 2431, 2596, 3400
Lsp1109I	GCAGC	8 cut(s)	351, 961, 1323, 1987, 2455, 2895, 3271, 3453
LweI	GCATC	5 cut(s)	127, 823, 961, 1003, 3246
MabI	ACCWGGT	1 cut(s)	1064
MaeI	CTAG	9 cut(s)	170, 237, 1044, 1530, 1626, 1773, 1989, 2316, 2390
MaeII	ACGT	2 cut(s)	16, 2580
MaeIII	GTNAC	8 cut(s)	1361, 1906, 1995, 2495, 3196, 3231, 3482, 3503
MfeI	CAATTG	1 cut(s)	1575
MflI	RGATCY	4 cut(s)	587, 671, 1476, 1517
MhlI	GDGCHC	2 cut(s)	2053, 3027
MlsI	TGGCCA	2 cut(s)	1764, 2895
MluNI	TGGCCA	2 cut(s)	1764, 2895
MlyI	GAGTC	4 cut(s)	263, 290, 1697, 3530
MmeI	TCCRAC	3 cut(s)	1545, 2165, 3330
Mox20I	TGGCCA	2 cut(s)	1764, 2895
MroI	TCCGGA	1 cut(s)	3114
MroXI	GAANNNNTTC	5 cut(s)	567, 778, 1831, 2580, 3219
MscI	TGGCCA	2 cut(s)	1764, 2895
MseI	TTAA	9 cut(s)	62, 1029, 1143, 2075, 2217, 2646, 3096, 3350, 3426
MslI	CAYNNNNRTG	4 cut(s)	1350, 2038, 2069, 2493
Msp20I	TGGCCA	2 cut(s)	1764, 2895
MspA1I	CMGCKG	2 cut(s)	342, 3489
MspCI	CTTAAG	1 cut(s)	2645
MspI	CCGG	4 cut(s)	1234, 1411, 2109, 3115
MunI	CAATTG	1 cut(s)	1575
Mva1269I	GAATGC	2 cut(s)	567, 1959
MvnI	CGCG	3 cut(s)	286, 969, 2589
NciI	CCSGG	2 cut(s)	1235, 1412
NcoI	CCATGG	2 cut(s)	1708, 2567
NdeI	CATATG	2 cut(s)	1795, 2950
NmeAIII	GCCGAG	3 cut(s)	1003, 1365, 3127
NmuCI	GTSAC	5 cut(s)	1361, 1995, 2495, 3231, 3503
NruI	TCGCGA	1 cut(s)	969
NspI	RCATGY	2 cut(s)	1996, 2980
OliI	CACNNNNGTG	1 cut(s)	2038
PaeR7I	CTCGAG	2 cut(s)	271, 2052
PagI	TCATGA	3 cut(s)	297, 505, 664
PceI	AGGCCT	2 cut(s)	1087, 3316
PciI	ACATGT	1 cut(s)	2976
PciSI	GCTCTTC	1 cut(s)	1498
PctI	GAATGC	2 cut(s)	567, 1959
PdmI	GAANNNNTTC	5 cut(s)	567, 778, 1831, 2580, 3219
PflFI	GACNNNGTC	1 cut(s)	1347
PleI	GAGTC	4 cut(s)	263, 289, 1697, 3529
PpsI	GAGTC	4 cut(s)	263, 289, 1697, 3529
PpuMI	RGGWCCY	2 cut(s)	1814, 2189
PscI	ACATGT	1 cut(s)	2976
Psp124BI	GAGCTC	1 cut(s)	3027
Psp5II	RGGWCCY	2 cut(s)	1814, 2189
PspFI	CCCAGC	1 cut(s)	2045
PspPPI	RGGWCCY	2 cut(s)	1814, 2189
PspXI	VCTCGAGB	1 cut(s)	2052
PstI	CTGCAG	1 cut(s)	2227
PsuI	RGATCY	4 cut(s)	587, 671, 1476, 1517
PsyI	GACNNNGTC	1 cut(s)	1347
PvuII	CAGCTG	1 cut(s)	342
RruI	TCGCGA	1 cut(s)	969
RsaI	GTAC	4 cut(s)	799, 2245, 2486, 2981
RsaNI	GTAC	4 cut(s)	798, 2244, 2485, 2980
RseI	CAYNNNNRTG	4 cut(s)	1350, 2038, 2069, 2493
SacI	GAGCTC	1 cut(s)	3027
SapI	GCTCTTC	1 cut(s)	1498
SaqAI	TTAA	9 cut(s)	62, 1029, 1143, 2075, 2217, 2646, 3096, 3350, 3426
SbfI	CCTGCAGG	1 cut(s)	2227
SchI	GAGTC	4 cut(s)	263, 290, 1697, 3530
SdaI	CCTGCAGG	1 cut(s)	2227
SduI	GDGCHC	2 cut(s)	2053, 3027
SexAI	ACCWGGT	1 cut(s)	1064
SfaNI	GCATC	5 cut(s)	127, 823, 961, 1003, 3246
SfcI	CTRYAG	1 cut(s)	2223
Sfr274I	CTCGAG	2 cut(s)	271, 2052
SinI	GGWCC	8 cut(s)	1231, 1619, 1814, 1943, 1967, 2009, 2189, 2294
SlaI	CTCGAG	2 cut(s)	271, 2052
SmiMI	CAYNNNNRTG	4 cut(s)	1350, 2038, 2069, 2493
SmlI	CTYRAG	7 cut(s)	271, 1148, 1836, 2052, 2645, 2711, 3020
SmoI	CTYRAG	7 cut(s)	271, 1148, 1836, 2052, 2645, 2711, 3020
Sse8387I	CCTGCAGG	1 cut(s)	2227
SseBI	AGGCCT	2 cut(s)	1087, 3316
SspI	AATATT	1 cut(s)	3046
SspMI	CTAG	9 cut(s)	170, 237, 1044, 1530, 1626, 1773, 1989, 2316, 2390
SstI	GAGCTC	1 cut(s)	3027
StuI	AGGCCT	2 cut(s)	1087, 3316
StyI	CCWWGG	5 cut(s)	1625, 1708, 2567, 3004, 3398
TaaI	ACNGT	5 cut(s)	638, 733, 2092, 2875, 3067
TaiI	ACGT	2 cut(s)	19, 2583
TaqI	TCGA	5 cut(s)	125, 272, 571, 611, 2053
TaqII	GACCGA	3 cut(s)	1149, 1203, 1374
TatI	WGTACW	1 cut(s)	2979
TauI	GCSGC	3 cut(s)	1752, 2368, 2812
Tru1I	TTAA	9 cut(s)	62, 1029, 1143, 2075, 2217, 2646, 3096, 3350, 3426
Tru9I	TTAA	9 cut(s)	62, 1029, 1143, 2075, 2217, 2646, 3096, 3350, 3426
TscAI	CASTG	7 cut(s)	109, 184, 534, 793, 967, 1759, 2893
TseFI	GTSAC	5 cut(s)	1361, 1995, 2495, 3231, 3503
TseI	GCWGC	8 cut(s)	339, 974, 1336, 1975, 2468, 2883, 3259, 3441
Tsp45I	GTSAC	5 cut(s)	1361, 1995, 2495, 3231, 3503
TspGWI	ACGGA	1 cut(s)	1139
TspRI	CASTG	7 cut(s)	109, 184, 534, 793, 967, 1759, 2893
Tth111I	GACNNNGTC	1 cut(s)	1347
Vha464I	CTTAAG	1 cut(s)	2645
VpaK11BI	GGWCC	8 cut(s)	1231, 1619, 1814, 1943, 1967, 2009, 2189, 2294
XagI	CCTNNNNNAGG	2 cut(s)	2181, 2316
XapI	RAATTY	8 cut(s)	466, 1049, 1446, 2344, 2374, 2540, 3298, 3538
XbaI	TCTAGA	1 cut(s)	2315
XceI	RCATGY	2 cut(s)	1996, 2980
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1772, 2174
XhoI	CTCGAG	2 cut(s)	271, 2052
XmaJI	CCTAGG	1 cut(s)	1625
XmnI	GAANNNNTTC	5 cut(s)	567, 778, 1831, 2580, 3219
XspI	CTAG	9 cut(s)	170, 237, 1044, 1530, 1626, 1773, 1989, 2316, 2390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.